View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19675_low_12 (Length: 645)
Name: NF19675_low_12
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19675_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 464; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 6 - 505
Target Start/End: Complemental strand, 37055404 - 37054905
Alignment:
| Q |
6 |
gttcctatctcaaaccctcccactcttccattttctcagcgagttatgcttgagaaatggaaacgctgaattcgtctgataacgggtcaatggccatgca |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
37055404 |
gttcctatctcaaaccctcccactcttccattttctcagcgagttatgcttgagaaatggaaatgctgaattcgtctgagaacgggtcaatggccatgca |
37055305 |
T |
|
| Q |
106 |
ctgtaccaatgtagcttacttttctgacgaaggagaagaacctcagcccattactgcttctgttccactctctcgtgctagtgaactcaccatttccttt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37055304 |
ctgtaccaatgtagcttacttttctgacgaaggagaagaacctcagcccattactgcttctgttccactctctcgtgctagtgaactcaccatttccttt |
37055205 |
T |
|
| Q |
206 |
gaaggcgaggtttatgttttcccttccgttacgccagaaaaggttcaattttttacagtttttatttcttcccccatcgatcaattgaagttttttgtgt |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37055204 |
gaaggcgaggtttatgttttcccttccgttacgccagaaaaggttcaattttttacagtttttatttcttcccccatcgatcaattgaagttttttgtgt |
37055105 |
T |
|
| Q |
306 |
tacgaactgaaatgcttgaatttgaattaccatagctaaataaattttgaaaattttgaactttttgttctgataatgcactctaggcaataaagtttaa |
405 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
37055104 |
tatgaactgaaatgcttgaatttgaattaccatagccaaataaattttgaaaattttgaactttttgttctgataatgcactctatgcaataaagtttaa |
37055005 |
T |
|
| Q |
406 |
ggttggattaaggttcaaatagtgggttttctacaatgtggtgaatggtgacgagttgataacatttattattcaagaaaatgagagtgttgatagcact |
505 |
Q |
| |
|
||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37055004 |
ggtcggattaaagttcaaatagtgggttttctacaatgcggtgaatggtgacgagttaataacatttattattcaagaaaatgagagtgttgatagcact |
37054905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 570 - 630
Target Start/End: Complemental strand, 37054840 - 37054780
Alignment:
| Q |
570 |
aaggaaaaaacctttgatcacccctctgtaatatgcaggtgcaggctgtattgttactctt |
630 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
37054840 |
aaggaaaaaacctttgatcacccctctgtaatatgcaggtacaggctgtattgttactctt |
37054780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University