View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19675_low_15 (Length: 574)

Name: NF19675_low_15
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19675_low_15
NF19675_low_15
[»] chr3 (4 HSPs)
chr3 (1-271)||(10368276-10368546)
chr3 (412-509)||(10368687-10368784)
chr3 (523-558)||(10368838-10368873)
chr3 (333-361)||(10368608-10368636)
[»] chr8 (2 HSPs)
chr8 (437-505)||(11659585-11659653)
chr8 (437-505)||(11668754-11668822)
[»] chr4 (1 HSPs)
chr4 (420-475)||(53239235-53239290)
[»] chr1 (1 HSPs)
chr1 (420-475)||(2170350-2170405)


Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-138; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 10368276 - 10368546
Alignment:
Q  1 ataagatagttttattttgttggagtcttttacatcatctgttagaataaattcacattgaaattttannnnnnngacaatcaagttttggttagcatga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||    
T  10368276 ataagatagttttattttgttggagtcttttacatcatctgttagaataaattcacattgaaattttatttttttgacaatcaagttttggttagcatga 10368375  T
Q  101 gcctatataaatgtcaaggctattttacttttcttgagttcttagtttgcaacagttatgtttcatctcattaacaataatttttaattctacgagagct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10368376 gcctatataaatgtcaaggctattttacttttcttgagttcttagtttgcaacagttatgtttcatctcattaacaataatttttaattctacgagagct 10368475  T
Q  201 ttcaattcaacggattgattgatttaatatgtcatctacaaagagcctatataaatgtcaccaaacttgtg 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10368476 ttcaattcaacggattgattgatttaatatgtcatctacaaagagcctatataaatgtcaccaaacttgtg 10368546  T

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Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 412 - 509
Target Start/End: Original strand, 10368687 - 10368784
Alignment:
Q  412 caacccgtgctgtagtggtatgaaaattgaaaaggacggcaagaagaagaaggaagttactatttctaggtatgggtttgcatttcgatctcacccct 509  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10368687 caacccgtactgtagtggtatgaaaattgaaaaggacggcaagaagaagaaggaagttactatttctaggtatgggtttgcatttcgatctcacccct 10368784  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 523 - 558
Target Start/End: Original strand, 10368838 - 10368873
Alignment:
Q  523 gcgtgtgtgtgtcttaaggaacaattgtggagtata 558  Q
    ||||||||||||||||||||||||||||||||||||    
T  10368838 gcgtgtgtgtgtcttaaggaacaattgtggagtata 10368873  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 333 - 361
Target Start/End: Original strand, 10368608 - 10368636
Alignment:
Q  333 agaaaacaaatctgaatctttgaactcca 361  Q
    |||||||||||||||||||||||||||||    
T  10368608 agaaaacaaatctgaatctttgaactcca 10368636  T

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Target: chr8 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 437 - 505
Target Start/End: Original strand, 11659585 - 11659653
Alignment:
Q  437 attgaaaaggacggcaagaagaagaaggaagttactatttctaggtatgggtttgcatttcgatctcac 505  Q
    |||||||||||| ||||||| |||||||| | ||||||||| |||||||||||||||||||||||||||    
T  11659585 attgaaaaggacagcaagaacaagaaggaggctactatttcaaggtatgggtttgcatttcgatctcac 11659653  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 437 - 505
Target Start/End: Original strand, 11668754 - 11668822
Alignment:
Q  437 attgaaaaggacggcaagaagaagaaggaagttactatttctaggtatgggtttgcatttcgatctcac 505  Q
    |||||||||||| |||| ||||||||||| | ||||||||| |||||| ||||||||||||||||||||    
T  11668754 attgaaaaggacagcaaaaagaagaaggaggctactatttcaaggtatcggtttgcatttcgatctcac 11668822  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 420 - 475
Target Start/End: Original strand, 53239235 - 53239290
Alignment:
Q  420 gctgtagtggtatgaaaattgaaaaggacggcaagaagaagaaggaagttactatt 475  Q
    |||| |||||| ||||||||||||||||| ||||||||||||| |||| |||||||    
T  53239235 gctgcagtggtctgaaaattgaaaaggacagcaagaagaagaaagaagctactatt 53239290  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 420 - 475
Target Start/End: Original strand, 2170350 - 2170405
Alignment:
Q  420 gctgtagtggtatgaaaattgaaaaggacggcaagaagaagaaggaagttactatt 475  Q
    |||| |||||| ||||||||||||||||| ||||||||||||| |||| |||||||    
T  2170350 gctgcagtggtctgaaaattgaaaaggacagcaagaagaagaaagaagctactatt 2170405  T

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