View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19675_low_16 (Length: 537)
Name: NF19675_low_16
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19675_low_16 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 454; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 3 - 527
Target Start/End: Complemental strand, 9574468 - 9573942
Alignment:
| Q |
3 |
ttgatctcttattatgcaaaaatacattatgccttgcctcgattaagtgcagagtaccgaggagtagctaatgttgtgtctaaatcttgcttgattagaa |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
9574468 |
ttgatctcttattatgcaaaaatacattatgccttgcctcgattaagtgcagagtatcgaggagtagctaatgttctgtctaaatcttgcttgattagaa |
9574369 |
T |
|
| Q |
103 |
acttacttttagaactacattgtccggttacaaaagctactttggtatattgtgttaatgttgctgcaatgtatctatccgacaattcagttcaacaata |
202 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9574368 |
acttacttttagaactacattgtccagttacaaaagctactttggtatattgtgttaatgttgctgcaatgtatctatccgacaattcagttcaacaata |
9574269 |
T |
|
| Q |
203 |
acacaccaaatacattgaaatgaatatacacttcttgtgtgaaaaagtttctcacggtcaagtgccagtcttacatgttccctatcattatcgatttgct |
302 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
9574268 |
acacaccaaatacattgaaatgaatatacacttcttgtgtgaaaaagtttctcatggtcaagtgcgagtcttacatgttccctatcattatcgatttgct |
9574169 |
T |
|
| Q |
303 |
attatcttcacaaagggacttatgttgctactttttatagtgattttagag---atttaactttcaatttcgattgtggagatggctaagagactatttt |
399 |
Q |
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| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
9574168 |
aacatcttcacaaagggacttacgttgctactttttatagtgattttagagattatttaactttcaatttcgattttggagatggctaagagactatttt |
9574069 |
T |
|
| Q |
400 |
atgtatatatatcattgatcaaatgaatgaaatgacgatcaatatttcttacaattttcttttatctttgggtttgggctatgtccctccatacatattt |
499 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||| || |
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| T |
9574068 |
atgtatatatattattgatcaaatgaatgaaatgacgatcaatatctcttacaattttc-tttatctttggatttgggctatgtccctccatacatactt |
9573970 |
T |
|
| Q |
500 |
gttttgtttttattaataatattttctt |
527 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
9573969 |
gttttgtttttattaataatattttctt |
9573942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 200 - 513
Target Start/End: Complemental strand, 9565406 - 9565096
Alignment:
| Q |
200 |
ataacacaccaaatacattgaaatgaatatacacttcttgtgtgaaaaagtttctcacggtcaagtgccagtcttacatgttccctatcattatcgattt |
299 |
Q |
| |
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||||||||||||| ||||||| ||||| |||||||||||| | ||||||||||||| | ||||||||| ||||| ||||||| | | || |||||||||| |
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| T |
9565406 |
ataacacaccaaacacattgatatgaacatacacttcttgggcgaaaaagtttctcccagtcaagtgcgagtctaacatgtttcatgtccttatcgattt |
9565307 |
T |
|
| Q |
300 |
gctattatcttcacaaagggacttatgttgctactttttatagtgattttagagatttaactttcaatttcgattgtggagatggctaagagactatttt |
399 |
Q |
| |
|
|||| |||||||||||| |||||| |||||||||||||| ||||||||||||||| | ||||||||||||| || |||||||| ||| |||||||||| |
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| T |
9565306 |
gctaacatcttcacaaagagacttacgttgctacttttta--gtgattttagagattcatctttcaatttcgactgaggagatggttaaaagactatttt |
9565209 |
T |
|
| Q |
400 |
atgtatatatatcattgatcaaatgaatgaaatgacgatcaatatttcttacaattttcttttatctttgggtttgggctatgtccctccatacatattt |
499 |
Q |
| |
|
|| ||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||| |||||||||||||||||| ||||||||| |||| |||||| |
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| T |
9565208 |
atatatatatatcattgatcaaataaatgaaatgacgaccaatatctcttacaattttc-tttatctttgggtttgggttatgtcccttcatatatattt |
9565110 |
T |
|
| Q |
500 |
gttttgtttttatt |
513 |
Q |
| |
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| || ||||||||| |
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|
| T |
9565109 |
ggttggtttttatt |
9565096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 54 - 156
Target Start/End: Complemental strand, 10533587 - 10533485
Alignment:
| Q |
54 |
gagtaccgaggagtagctaatgttgtgtctaaatcttgcttgattagaaacttacttttagaactacattgtccggttacaaaagctactttggtatatt |
153 |
Q |
| |
|
|||||||| ||||| || ||||| || ||| ||||||| | ||||||||||||||| || ||||||||||| || || |||| ||| |||||||| |||| |
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|
| T |
10533587 |
gagtaccgcggagtcgccaatgtagtatctgaatcttgttggattagaaacttactgttggaactacattgcccagtcacaacagccactttggtttatt |
10533488 |
T |
|
| Q |
154 |
gtg |
156 |
Q |
| |
|
||| |
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|
| T |
10533487 |
gtg |
10533485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 262
Target Start/End: Original strand, 8045214 - 8045304
Alignment:
| Q |
172 |
tgtatctatccgacaattcagttcaacaataacacaccaaatacattgaaatgaatatacacttcttgtgtgaaaaagtttctcacggtca |
262 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| ||||||| |||| ||||| |||||||||| || | ||||||||| ||| |||||| |
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| T |
8045214 |
tgtatctatccgacaatccagttcaacatcaacgcaccaaacacatcgaaattgatatacactttgtgcgggaaaaagttactcgcggtca |
8045304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 124
Target Start/End: Original strand, 22949570 - 22949640
Alignment:
| Q |
54 |
gagtaccgaggagtagctaatgttgtgtctaaatcttgcttgattagaaacttacttttagaactacattg |
124 |
Q |
| |
|
|||||||| ||||| || ||||| || ||| ||||||| | ||||||||||||||| || ||||||||||| |
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| T |
22949570 |
gagtaccgcggagtcgccaatgtagtatctgaatcttgttggattagaaacttactgttggaactacattg |
22949640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 54 - 232
Target Start/End: Complemental strand, 25624025 - 25623847
Alignment:
| Q |
54 |
gagtaccgaggagtagctaatgttgtgtctaaatcttgcttgattagaaacttacttttagaactacattgtccggttacaaaagctactttggtatatt |
153 |
Q |
| |
|
|||||||| ||||| | ||||| || ||| ||||||| | ||||||||||||||| || ||||||||||| || || |||| | |||||||||| |||| |
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| T |
25624025 |
gagtaccgcggagtcaccaatgtagtatctgaatcttgttggattagaaacttactgttggaactacattgcccagtcacaacatctactttggtttatt |
25623926 |
T |
|
| Q |
154 |
gtgttaatgttgctgcaatgtatctatccgacaattcagttcaacaataacacaccaaatacattgaaatgaatataca |
232 |
Q |
| |
|
||| |||||| ||| | ||| |||||| ||| |||| ||||| ||| ||||||| |||| || ||||||||||| |
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| T |
25623925 |
gtgataatgtgagtgctgtctatttatccggcaacccagtccaacatcaacgcaccaaacacatcgagatgaatataca |
25623847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 127
Target Start/End: Complemental strand, 5417139 - 5417079
Alignment:
| Q |
67 |
tagctaatgttgtgtctaaatcttgcttgattagaaacttacttttagaactacattgtcc |
127 |
Q |
| |
|
|||||||||| |||| | |||| || | ||||||||||| ||||| ||||||||||||||| |
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|
| T |
5417139 |
tagctaatgtagtgtttgaatcatgttggattagaaactaactttcagaactacattgtcc |
5417079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 156
Target Start/End: Original strand, 91801 - 91903
Alignment:
| Q |
54 |
gagtaccgaggagtagctaatgttgtgtctaaatcttgcttgattagaaacttacttttagaactacattgtccggttacaaaagctactttggtatatt |
153 |
Q |
| |
|
|||||||| ||||| || ||||| || ||| ||||||| | ||||||||||||||| || ||||||||||| || || |||| ||| ||| |||| |||| |
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|
| T |
91801 |
gagtaccgcggagtcgccaatgtagtatctgaatcttgttggattagaaacttactgttggaactacattgcccagtcacaacagccactctggtttatt |
91900 |
T |
|
| Q |
154 |
gtg |
156 |
Q |
| |
|
||| |
|
|
| T |
91901 |
gtg |
91903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 156
Target Start/End: Complemental strand, 47249677 - 47249575
Alignment:
| Q |
54 |
gagtaccgaggagtagctaatgttgtgtctaaatcttgcttgattagaaacttacttttagaactacattgtccggttacaaaagctactttggtatatt |
153 |
Q |
| |
|
|||||||| ||||| || ||||| || ||| ||||||| | ||||||||||||||| || ||||||||||| || || |||| | ||||| |||| |||| |
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|
| T |
47249677 |
gagtaccgcggagtcgccaatgtagtatctgaatcttgttggattagaaacttactgttggaactacattgcccagtcacaacatctactatggtttatt |
47249578 |
T |
|
| Q |
154 |
gtg |
156 |
Q |
| |
|
||| |
|
|
| T |
47249577 |
gtg |
47249575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 42336435 - 42336483
Alignment:
| Q |
95 |
gattagaaacttacttttagaactacattgtccggttacaaaagctact |
143 |
Q |
| |
|
|||||||| ||||||||||||| |||||||| | ||||||||||||||| |
|
|
| T |
42336435 |
gattagaatcttacttttagaaatacattgttctgttacaaaagctact |
42336483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 124
Target Start/End: Original strand, 3955185 - 3955255
Alignment:
| Q |
54 |
gagtaccgaggagtagctaatgttgtgtctaaatcttgcttgattagaaacttacttttagaactacattg |
124 |
Q |
| |
|
||||||| ||||| || ||||| || ||||||||||| | ||||||||||||||| || ||||||||||| |
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|
| T |
3955185 |
gagtaccacggagtcgccaatgtagtatctaaatcttgttggattagaaacttactgttggaactacattg |
3955255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 205 - 283
Target Start/End: Complemental strand, 28495288 - 28495210
Alignment:
| Q |
205 |
acaccaaatacattgaaatgaatatacacttcttgtgtgaaaaagtttctcacggtcaagtgccagtcttacatgttcc |
283 |
Q |
| |
|
|||||||| ||||||||||| |||||||||| |||| ||| ||||| ||| |||||| |||| || ||||||||||| |
|
|
| T |
28495288 |
acaccaaacacattgaaatggatatacactttgtgtgggaagaagttgctcgcggtcaggtgcatgtattacatgttcc |
28495210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 205 - 283
Target Start/End: Complemental strand, 29807697 - 29807619
Alignment:
| Q |
205 |
acaccaaatacattgaaatgaatatacacttcttgtgtgaaaaagtttctcacggtcaagtgccagtcttacatgttcc |
283 |
Q |
| |
|
|||||||| ||||||||||| |||||||||| |||| ||| ||||| ||| |||||| |||| || ||||||||||| |
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|
| T |
29807697 |
acaccaaacacattgaaatggatatacactttgtgtgggaagaagttgctcgcggtcaggtgcatgtattacatgttcc |
29807619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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