View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19675_low_18 (Length: 528)
Name: NF19675_low_18
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19675_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 11 - 514
Target Start/End: Original strand, 44817514 - 44818017
Alignment:
| Q |
11 |
agaatatagtttacctgattagggctagtgttgtaatgattcgaacagctgctggccgaatggggagagactatactttttcttcaaatgctataactga |
110 |
Q |
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| T |
44817514 |
agaatatagtttacctgattagggctagtgttgtaatgattcgaacagctgctggccgaatggggagagactatactttttcttcaaatgctataactga |
44817613 |
T |
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| Q |
111 |
aaattgtttgagcaacgcagcaaaatgaaacaaacgatgcgtgtattcttttatttgttgcacttgtaaattttggcacggggcagtttatacagaataa |
210 |
Q |
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| T |
44817614 |
aaattgtttgagcaacgcagcaaaatgaaacaaacgatgcgtgtattcttttatttgttgcacttgtaaattttggcacggggcagtttatacagaataa |
44817713 |
T |
|
| Q |
211 |
cttgttgaagaatattttggccccccttgaagaggttgcactagagaaaattagattatatttcataggaagtctaagctccatttcagtgaatcaccta |
310 |
Q |
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| T |
44817714 |
cttgttgaagaatattttggccccccttgaagaggttgcactagagaaaattagattatatttcataggaagtctaagctccatttcagtgaatcaccta |
44817813 |
T |
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| Q |
311 |
aaattagaagttattgctaaaaatccttatgcataagtgaagtttaatttcatagatccttcttcaaaacgttactctacaaatttagatcattcgtatg |
410 |
Q |
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| T |
44817814 |
aaattagaagttattgctaaaaatccttatgcataagtgaagtttactttcatagatccttcttcaaaacgttactctacaaatttagatcattcgtatg |
44817913 |
T |
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| Q |
411 |
ttgcatagctgctttctttcttttgaccattaggtgatcccataacatttgtgtttgaaaggtccttcctgtgttgacctcaagctgcttctaatgccac |
510 |
Q |
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| T |
44817914 |
ttgcatagctgctttctttcttttgaccattaggtgatcccataacatttgtgtttgaaaggtccttcctgtgttgacctcaagctgcttctaatgccac |
44818013 |
T |
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| Q |
511 |
tttc |
514 |
Q |
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| T |
44818014 |
tttc |
44818017 |
T |
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