View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19675_low_20 (Length: 514)

Name: NF19675_low_20
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19675_low_20
NF19675_low_20
[»] chr3 (29 HSPs)
chr3 (5-497)||(11145815-11146313)
chr3 (15-355)||(11128135-11128478)
chr3 (4-355)||(10891915-10892269)
chr3 (4-338)||(11157143-11157480)
chr3 (4-355)||(8863895-8864249)
chr3 (389-497)||(10892234-10892342)
chr3 (389-497)||(11157053-11157161)
chr3 (389-497)||(11128062-11128170)
chr3 (389-482)||(8864214-8864307)
chr3 (148-243)||(13335651-13335746)
chr3 (202-327)||(10360947-10361072)
chr3 (148-345)||(13173775-13173972)
chr3 (203-243)||(12131049-12131089)
chr3 (148-243)||(13163727-13163822)
chr3 (273-327)||(9841727-9841781)
chr3 (273-327)||(10372988-10373042)
chr3 (272-327)||(10583381-10583436)
chr3 (273-327)||(9980335-9980389)
chr3 (273-327)||(10263570-10263624)
chr3 (273-327)||(10431187-10431241)
chr3 (273-327)||(11779128-11779182)
chr3 (389-435)||(13173947-13173993)
chr3 (274-327)||(9852609-9852662)
chr3 (298-327)||(10034897-10034926)
chr3 (298-327)||(10091682-10091711)
chr3 (298-327)||(10198564-10198593)
chr3 (298-327)||(11772128-11772157)
chr3 (409-465)||(10372919-10372975)
chr3 (203-243)||(13346909-13346949)
[»] scaffold0002 (3 HSPs)
scaffold0002 (148-345)||(133016-133213)
scaffold0002 (148-243)||(143166-143261)
scaffold0002 (389-435)||(132995-133041)
[»] chr6 (1 HSPs)
chr6 (209-290)||(31676982-31677063)
[»] chr1 (1 HSPs)
chr1 (203-290)||(828674-828761)
[»] scaffold0083 (1 HSPs)
scaffold0083 (273-327)||(54748-54802)


Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 5 - 497
Target Start/End: Complemental strand, 11146313 - 11145815
Alignment:
Q  5 atggacatcatcaccactcttgaaagtttgtatctccacagtcttccaaaactagagttttcactatgtgaaggagt---cttacctcccaaattacaaa 101  Q
    ||||||| | |||| |||||||||||||||  ||||| |  |||||||||||||||||| |||||||||||||||||   ||||||||||||||||||||    
T  11146313 atggacaccctcacaactcttgaaagtttgagtctccgccatcttccaaaactagagttgtcactatgtgaaggagttttcttacctcccaaattacaaa 11146214  T
Q  102 caatttctattacatctttgagaataacaaagatgccaccattaattgaatgggg---tttccaaagtcttacttctcttgcaatattgtatattaaaga 198  Q
    ||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||   ||||||||| |||||||||||| |||  ||| | ||| ||||    
T  11146213 caatttctattgcatctgtgagaataacaaagatgccgccattaattgaatgggggggtttccaaagccttacttctcttacaaatttgaaaattgaaga 11146114  T
Q  199 taatgatgatattgttaacaccttgttgaaggagcaattgctgcctgtttccttaatgtttctgtcaataagtaatctctctgaagtgaaatgcttaggt 298  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||  |||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  11146113 taatgatgatattgttcacaccttgttgaaggagcaattgctacccatttccttggtgtttctgtcaataagtaatctctctgaagtgaaatgcttaggt 11146014  T
Q  299 ggaaatgggcttcgacacctctcctctctggaaacactttctttttacgaatgtcaacaacttgagtccttggcagaggtcatgttaccttcctctctcg 398  Q
    ||||||||||||||||| |||||| |||| |||||||||  ||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||     
T  11146013 ggaaatgggcttcgacaactctccgctcttgaaacacttaatttttataactgtcaacaacttgagtccttggcagaggtcatgttaccttcctctctca 11145914  T
Q  399 aaacactttctttttataactgtcaaaggcttgagtcatttccagaacacagtctcccttcctctctaaagttactgagcatttctgaatgccctgttt 497  Q
    |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  11145913 aaacactttctttttacaaatgtcaaaggcttgagtcatttccagaacacagtctcccttcctctctaaagttactgagcatttctaaatgccctgttt 11145815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 15 - 355
Target Start/End: Complemental strand, 11128478 - 11128135
Alignment:
Q  15 tcaccactcttgaaagtttgtatctccacagtcttccaaaactagagttttcactatgtgaaggagt---cttacctcccaaattacaaacaatttctat 111  Q
    ||||||||||||||| |||||||||||||  |||||||||||||||||| |||||||||||||||||   ||||||||||||||||||||||||||||||    
T  11128478 tcaccactcttgaaattttgtatctccaccatcttccaaaactagagttgtcactatgtgaaggagttttcttacctcccaaattacaaacaatttctat 11128379  T
Q  112 tacatctttgagaataacaaagatgccaccattaattgaatggggtttccaaagtcttacttctcttgcaatattgtatattaaagataatgatgatatt 211  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||   |||||||||||||| ||||||||||||    
T  11128378 tacatctgtgagaataacaaagatgccgccattaattgaatggggtttccaaagccttacttctctttcatatttgtatattaaagagaatgatgatatt 11128279  T
Q  212 gttaacaccttgttgaaggagcaattgctgcctgtttccttaatgtttctgtcaataagtaatctctctgaagtgaaatgcttaggtggaaatgggcttc 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11128278 gttaacaccttgttgaaggagcaattgctgcctgtttccttaatgtttctgtcaataagtaatctctctgaagtgaaatgcttaggtggaaatgggcttc 11128179  T
Q  312 gacacctctcctctctggaaacactttctttttacgaatgtcaa 355  Q
    |||||||||||||||| |||||||||||||||||||| ||||||    
T  11128178 gacacctctcctctcttgaaacactttctttttacgactgtcaa 11128135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 4 - 355
Target Start/End: Original strand, 10891915 - 10892269
Alignment:
Q  4 gatggacatcatcaccactcttgaaagtttgtatctcca-cagtcttccaaaactagagttttcactatgtgaaggagt---cttacctcccaaattaca 99  Q
    |||||||| | ||||| |||||||| |||||  |||||| ||| |||||||||||||||||| ||| ||| ||||||||   ||||||||||||||||||    
T  10891915 gatggacaccctcacctctcttgaatgtttgagtctccatcag-cttccaaaactagagtttgcaccatgcgaaggagttttcttacctcccaaattaca 10892013  T
Q  100 aacaatttctattacatctttgagaataacaaagatgccaccattaattgaatggggtttccaaagtcttacttctcttgcaatattgtatattaaagat 199  Q
    ||| |||||||||| |||| ||||||||||||| ||||| |||||||||||||||||||||||||| ||||||| |||| ||| ||||||||||||||||    
T  10892014 aaccatttctattaaatctgtgagaataacaaaaatgccgccattaattgaatggggtttccaaagccttacttatctttcaaaattgtatattaaagat 10892113  T
Q  200 aatgatgatattgttaacaccttgttgaaggagcaattgctgcctgtttccttaatgtttctgtcaataagtaatctctctgaagtgaaatgcttaggtg 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10892114 aatgatgatattgttaacaccttgttgaaggagcaattgctgcctgtttccttaatgtttctgtcaataagtaatctctctgaaatgaaatgcttaggtg 10892213  T
Q  300 gaaatgggcttcgacacctctcctctctggaaacactttctttttacgaatgtcaa 355  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  10892214 gaaatgggcttcgacacctctcctctctggaaacactttcttttcacaaatgtcaa 10892269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 4 - 338
Target Start/End: Complemental strand, 11157480 - 11157143
Alignment:
Q  4 gatggacatcatcaccactcttgaaagtttgtatctccacagtcttccaaaactagagttttcactatgtgaaggagt---cttacctcccaaattacaa 100  Q
    |||||||| | ||||| |||||||||| ||||||||||||  ||||||||||||||||||| |||||| |||||||||   |||||||||||||||||||    
T  11157480 gatggacaccctcaccgctcttgaaagattgtatctccaccatcttccaaaactagagtttgcactatatgaaggagttttcttacctcccaaattacaa 11157381  T
Q  101 acaatttctattacatctttgagaataacaaagatgccaccattaattgaatggggtttccaaagtcttacttctcttgcaatattgtatattaaagata 200  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||| |||  ||||||||||||||||    
T  11157380 acaatttctattacatctgtgagaataacaaagatgccgccattaattgaatggggtttccaaagccttacttatctttcaaatttgtatattaaagata 11157281  T
Q  201 atgatgatattgttaacaccttgttgaaggagcaattgctgcctgtttccttaatgtttctgtcaataagtaatctctctgaagtgaaatgcttaggtgg 300  Q
    |||||||| ||||| ||||||||||||||||||||||||| ||   ||||||  ||||||||||||||||||| ||||||||||||||||||||||||||    
T  11157280 atgatgatgttgttcacaccttgttgaaggagcaattgcttcccacttccttggtgtttctgtcaataagtaaactctctgaagtgaaatgcttaggtgg 11157181  T
Q  301 aaatgggcttcgacacctctcctctctggaaacacttt 338  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11157180 aaatgggcttcgacacctctcctctctggaaacacttt 11157143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 4 - 355
Target Start/End: Original strand, 8863895 - 8864249
Alignment:
Q  4 gatggacatcatcaccactcttgaaagtttgtatctccacagtcttccaaaactagagttttcactatgtgaaggagt---cttacctcccaaattacaa 100  Q
    |||||||| | |||||||||||||||| ||| || || ||  |||||||||||| |||||| |||||| |||||||||   ||||||||||||||| |||    
T  8863895 gatggacaccctcaccactcttgaaagattgcatttctaccatcttccaaaacttgagtttgcactatatgaaggagttttcttacctcccaaattgcaa 8863994  T
Q  101 acaatttctattacatctttgagaataacaaagatgccaccattaattgaatggggtttccaaagtcttacttctcttgcaatattgtatattaaagata 200  Q
    ||||||| |||||||||| | ||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||| |||  ||||||||||||||||    
T  8863995 acaatttatattacatctgtaagaataacaaagatgccgccattaattgaatggggtttccaaagccttacttatctttcaaatttgtatattaaagata 8864094  T
Q  201 atgatgatattgttaacaccttgttgaaggagcaattgctgcctgtttccttaatgtttctgtcaataagtaatctctctgaagtgaaatgcttaggtgg 300  Q
    |||||||| ||||| ||||||||||||||||||||||||| ||  |||||||  |||||||||||||||||||||||||||||| ||||||||||| |||    
T  8864095 atgatgatgttgttcacaccttgttgaaggagcaattgctacccatttccttggtgtttctgtcaataagtaatctctctgaagcgaaatgcttagatgg 8864194  T
Q  301 aaatgggcttcgacacctctcctctctggaaacactttctttttacgaatgtcaa 355  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||    
T  8864195 aaatgggcttcgatacctctcctctctggaaacactttcttttcacgactgtcaa 8864249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 389 - 497
Target Start/End: Original strand, 10892234 - 10892342
Alignment:
Q  389 tcctctctcgaaacactttctttttataactgtcaaaggcttgagtcatttccagaacacagtctcccttcctctctaaagttactgagcatttctgaat 488  Q
    |||||||| ||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||    
T  10892234 tcctctctggaaacactttcttttcacaaatgtcaaaggcttgagtcatttccagaacacagtctcccttcctctctaaagatactgagcatttctaaat 10892333  T
Q  489 gccctgttt 497  Q
    |||||||||    
T  10892334 gccctgttt 10892342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 389 - 497
Target Start/End: Complemental strand, 11157161 - 11157053
Alignment:
Q  389 tcctctctcgaaacactttctttttataactgtcaaaggcttgagtcatttccagaacacagtctcccttcctctctaaagttactgagcatttctgaat 488  Q
    |||||||| ||||||||||  ||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  11157161 tcctctctggaaacactttagttttcgaaatgtcaaaggcttgagtcatttccagaacacagtctcccttcctctctaaagttactgagcatttctaaat 11157062  T
Q  489 gccctgttt 497  Q
    |||||||||    
T  11157061 gccctgttt 11157053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 389 - 497
Target Start/End: Complemental strand, 11128170 - 11128062
Alignment:
Q  389 tcctctctcgaaacactttctttttataactgtcaaaggcttgagtcatttccagaacacagtctcccttcctctctaaagttactgagcatttctgaat 488  Q
    |||||||| |||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||| | |    
T  11128170 tcctctcttgaaacactttctttttacgactgtcaaaggattgagtcatttccagaacacagtctcccttcctctctaaagttactgcacatttctaatt 11128071  T
Q  489 gccctgttt 497  Q
    |||||||||    
T  11128070 gccctgttt 11128062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 389 - 482
Target Start/End: Original strand, 8864214 - 8864307
Alignment:
Q  389 tcctctctcgaaacactttctttttataactgtcaaaggcttgagtcatttccagaacacagtctcccttcctctctaaagttactgagcattt 482  Q
    |||||||| ||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8864214 tcctctctggaaacactttcttttcacgactgtcaaaggcttgagtcatttccagaacacagtctcccttcctctctaaagttactgagaattt 8864307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 148 - 243
Target Start/End: Original strand, 13335651 - 13335746
Alignment:
Q  148 tgaatggggtttccaaagtcttacttctcttgcaatattgtatattaaagataatgatgatattgttaacaccttgttgaaggagcaattgctgcc 243  Q
    |||||||||| |||||  ||||||||||||| |||  |||||||||  || | | ||||||||||||||||||||| |||||||||  ||||||||    
T  13335651 tgaatggggtctccaacatcttacttctctttcaagtttgtatattggaggtgacgatgatattgttaacaccttgctgaaggagcggttgctgcc 13335746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 202 - 327
Target Start/End: Complemental strand, 10361072 - 10360947
Alignment:
Q  202 tgatgatattgttaacaccttgttgaaggagcaattgctgcctgtttccttaatgtttctgtcaataagtaatctctctgaagtgaaatgcttaggtgga 301  Q
    ||||||||| |||||||||||| ||||||||  |||||| || || ||| |  ||| ||||  |||   | ||||||||||| |||| | ||| | ||||    
T  10361072 tgatgatatagttaacaccttgatgaaggagtcattgctacccgtctcccttgtgtctctggaaatccatcatctctctgaaatgaagtcctttgatgga 10360973  T
Q  302 aatgggcttcgacacctctcctctct 327  Q
    ||||||||||||||||||||||||||    
T  10360972 aatgggcttcgacacctctcctctct 10360947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 148 - 345
Target Start/End: Original strand, 13173775 - 13173972
Alignment:
Q  148 tgaatggggtttccaaagtcttacttctcttgcaatattgtatattaaagataatgatgatattgttaacaccttgttgaaggagcaattgctgcctgtt 247  Q
    |||||||||| |||||  ||||||||||||| |||  ||||||||   || | | ||||||||||||||||||||| |||||||||  ||||||||  ||    
T  13173775 tgaatggggtctccaacatcttacttctctttcaagtttgtatatgggaggttacgatgatattgttaacaccttgctgaaggagcggttgctgccaatt 13173874  T
Q  248 tccttaatgtttctgtcaataagtaatctctctgaagtgaaatgcttaggtggaaatgggcttcgacacctctcctctctggaaacactttcttttta 345  Q
    ||  |  ||| | |||  ||   |||||||| |||| | |||| | | | ||||||||| || |||||||| |||||||| |||||||||| ||||||    
T  13173875 tcacttgtgtctttgtatatttctaatctctgtgaaataaaatccattgatggaaatggactccgacacctatcctctcttgaaacactttgttttta 13173972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 12131049 - 12131089
Alignment:
Q  203 gatgatattgttaacaccttgttgaaggagcaattgctgcc 243  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  12131049 gatgatattgttaacaccttgttgaaggagcagttgctgcc 12131089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 148 - 243
Target Start/End: Original strand, 13163727 - 13163822
Alignment:
Q  148 tgaatggggtttccaaagtcttacttctcttgcaatattgtatattaaagataatgatgatattgttaacaccttgttgaaggagcaattgctgcc 243  Q
    |||||||||| |||||  ||||||||| ||| |||  |||||||||  || | | ||||||||||||||||||||| |||||||||  ||||||||    
T  13163727 tgaatggggtctccaacatcttacttcgctttcaagtttgtatattggaggtgacgatgatattgttaacaccttgctgaaggagcggttgctgcc 13163822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 327
Target Start/End: Original strand, 9841727 - 9841781
Alignment:
Q  273 atctctctgaagtgaaatgcttaggtggaaatgggcttcgacacctctcctctct 327  Q
    ||||||||||| |||| | ||| | ||||||||||||||||||||||||||||||    
T  9841727 atctctctgaaatgaagtcctttgatggaaatgggcttcgacacctctcctctct 9841781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 327
Target Start/End: Complemental strand, 10373042 - 10372988
Alignment:
Q  273 atctctctgaagtgaaatgcttaggtggaaatgggcttcgacacctctcctctct 327  Q
    ||||||||||| |||| | ||| | ||||||||||||||||||||||||||||||    
T  10373042 atctctctgaaatgaagtcctttgatggaaatgggcttcgacacctctcctctct 10372988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 327
Target Start/End: Original strand, 10583381 - 10583436
Alignment:
Q  272 aatctctctgaagtgaaatgcttaggtggaaatgggcttcgacacctctcctctct 327  Q
    |||||||||||| |||| | ||| | |||||||||||| |||||||||||||||||    
T  10583381 aatctctctgaaatgaagtcctttgatggaaatgggctgcgacacctctcctctct 10583436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 273 - 327
Target Start/End: Original strand, 9980335 - 9980389
Alignment:
Q  273 atctctctgaagtgaaatgcttaggtggaaatgggcttcgacacctctcctctct 327  Q
    ||||||||||| |||| | ||| | |||||||||||| |||||||||||||||||    
T  9980335 atctctctgaaatgaagtcctttgatggaaatgggctgcgacacctctcctctct 9980389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 273 - 327
Target Start/End: Original strand, 10263570 - 10263624
Alignment:
Q  273 atctctctgaagtgaaatgcttaggtggaaatgggcttcgacacctctcctctct 327  Q
    ||||||||||| |||| | ||| | |||||||||||||| |||||||||||||||    
T  10263570 atctctctgaaatgaagtcctttgatggaaatgggcttcaacacctctcctctct 10263624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 273 - 327
Target Start/End: Complemental strand, 10431241 - 10431187
Alignment:
Q  273 atctctctgaagtgaaatgcttaggtggaaatgggcttcgacacctctcctctct 327  Q
    ||||||||||| |||| | ||| | |||||||||||| |||||||||||||||||    
T  10431241 atctctctgaaatgaagtcctttgatggaaatgggctgcgacacctctcctctct 10431187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 273 - 327
Target Start/End: Complemental strand, 11779182 - 11779128
Alignment:
Q  273 atctctctgaagtgaaatgcttaggtggaaatgggcttcgacacctctcctctct 327  Q
    |||||| |||| |||| | ||| | ||||||||||||||||||||||||||||||    
T  11779182 atctctatgaaatgaagtccttcgatggaaatgggcttcgacacctctcctctct 11779128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 435
Target Start/End: Original strand, 13173947 - 13173993
Alignment:
Q  389 tcctctctcgaaacactttctttttataactgtcaaaggcttgagtc 435  Q
    |||||||| |||||||||| ||||||||| |||| ||||||||||||    
T  13173947 tcctctcttgaaacactttgtttttataattgtccaaggcttgagtc 13173993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 327
Target Start/End: Original strand, 9852609 - 9852662
Alignment:
Q  274 tctctctgaagtgaaatgcttaggtggaaatgggcttcgacacctctcctctct 327  Q
    |||||||||| |||| | ||| | ||||||||||||||||||||||| ||||||    
T  9852609 tctctctgaaatgaagtcctttgatggaaatgggcttcgacacctcttctctct 9852662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 327
Target Start/End: Original strand, 10034897 - 10034926
Alignment:
Q  298 tggaaatgggcttcgacacctctcctctct 327  Q
    ||||||||||||||||||||||||||||||    
T  10034897 tggaaatgggcttcgacacctctcctctct 10034926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 327
Target Start/End: Original strand, 10091682 - 10091711
Alignment:
Q  298 tggaaatgggcttcgacacctctcctctct 327  Q
    ||||||||||||||||||||||||||||||    
T  10091682 tggaaatgggcttcgacacctctcctctct 10091711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 327
Target Start/End: Original strand, 10198564 - 10198593
Alignment:
Q  298 tggaaatgggcttcgacacctctcctctct 327  Q
    ||||||||||||||||||||||||||||||    
T  10198564 tggaaatgggcttcgacacctctcctctct 10198593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 327
Target Start/End: Original strand, 11772128 - 11772157
Alignment:
Q  298 tggaaatgggcttcgacacctctcctctct 327  Q
    ||||||||||||||||||||||||||||||    
T  11772128 tggaaatgggcttcgacacctctcctctct 11772157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 465
Target Start/End: Complemental strand, 10372975 - 10372919
Alignment:
Q  409 tttttataactgtcaaaggcttgagtcatttccagaacacagtctcccttcctctct 465  Q
    ||||| ||| ||| ||| |||||||||||| |||||| |||| ||||||||||||||    
T  10372975 tttttttaattgtgaaaagcttgagtcattaccagaagacagcctcccttcctctct 10372919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 13346909 - 13346949
Alignment:
Q  203 gatgatattgttaacaccttgttgaaggagcaattgctgcc 243  Q
    ||||||||||||||||||||| |||||||||  ||||||||    
T  13346909 gatgatattgttaacaccttgctgaaggagcggttgctgcc 13346949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 148 - 345
Target Start/End: Complemental strand, 133213 - 133016
Alignment:
Q  148 tgaatggggtttccaaagtcttacttctcttgcaatattgtatattaaagataatgatgatattgttaacaccttgttgaaggagcaattgctgcctgtt 247  Q
    |||||||||| |||||  ||||||||||||| |||  ||||||||   || | | ||||||||||||||||||||| |||||||||  ||||||||  ||    
T  133213 tgaatggggtctccaacatcttacttctctttcaagtttgtatatgggaggttacgatgatattgttaacaccttgctgaaggagcggttgctgccaatt 133114  T
Q  248 tccttaatgtttctgtcaataagtaatctctctgaagtgaaatgcttaggtggaaatgggcttcgacacctctcctctctggaaacactttcttttta 345  Q
    ||  |  ||| | |||  ||   |||||||| |||| | |||| | | | ||||||||| || |||||||| |||||||| |||||||||| ||||||    
T  133113 tcacttgtgtctttgtatatttctaatctctgtgaaataaaatccattgatggaaatggactccgacacctatcctctcttgaaacactttgttttta 133016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 148 - 243
Target Start/End: Complemental strand, 143261 - 143166
Alignment:
Q  148 tgaatggggtttccaaagtcttacttctcttgcaatattgtatattaaagataatgatgatattgttaacaccttgttgaaggagcaattgctgcc 243  Q
    |||||||||| |||||  ||||||||| ||| |||  |||||||||  || | | ||||||||||||||||||||| |||||||||  ||||||||    
T  143261 tgaatggggtctccaacatcttacttcgctttcaagtttgtatattggaggtgacgatgatattgttaacaccttgctgaaggagcggttgctgcc 143166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 435
Target Start/End: Complemental strand, 133041 - 132995
Alignment:
Q  389 tcctctctcgaaacactttctttttataactgtcaaaggcttgagtc 435  Q
    |||||||| |||||||||| ||||||||| |||| ||||||||||||    
T  133041 tcctctcttgaaacactttgtttttataattgtccaaggcttgagtc 132995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 209 - 290
Target Start/End: Complemental strand, 31677063 - 31676982
Alignment:
Q  209 attgttaacaccttgttgaaggagcaattgctgcctgtttccttaatgtttctgtcaataagtaatctctctgaagtgaaat 290  Q
    ||||||||||| || ||||||||| | || |||||| |||||||| ||| |||| |||| | ||||||||||||| ||||||    
T  31677063 attgttaacactttcttgaaggagaagttactgcctatttccttagtgtctctgacaatcactaatctctctgaaatgaaat 31676982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 290
Target Start/End: Original strand, 828674 - 828761
Alignment:
Q  203 gatgatattgttaacaccttgttgaaggagcaattgctgcctgtttccttaatgtttctgtcaataagtaatctctctgaagtgaaat 290  Q
    |||||||  ||||||||||||||||||||| | ||||| ||  ||| | |  ||| |||| |||||||||||||||||||| ||||||    
T  828674 gatgataacgttaacaccttgttgaaggagaagttgcttcccattttcctcgtgtctctgacaataagtaatctctctgaaatgaaat 828761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 273 - 327
Target Start/End: Complemental strand, 54802 - 54748
Alignment:
Q  273 atctctctgaagtgaaatgcttaggtggaaatgggcttcgacacctctcctctct 327  Q
    ||||||||||| |||| | ||| | |||||||||||| |||||||||||||||||    
T  54802 atctctctgaaatgaagtcctttgatggaaatgggctgcgacacctctcctctct 54748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University