View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19675_low_21 (Length: 472)
Name: NF19675_low_21
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19675_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 13 - 440
Target Start/End: Complemental strand, 30511580 - 30511148
Alignment:
| Q |
13 |
aatatggaatttcaagctcacctcacattcatcagaacaactttgatccaaactacatcgcaaatcctcaac-ttaaaccaaaccacatgtgttaattta |
111 |
Q |
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| T |
30511580 |
aatatggaatttcaagctcacctcacattcatcagaacaactttgatccaaactacatcgcaaatcctcaaccttaaaccaaaccacatatgttaattta |
30511481 |
T |
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| Q |
112 |
gaacaaagttagtattagttaaaaaggtttaatgtcaaatcaatgagaaatcaaatgacgtgtgtatgaatgtatttgccctaaaattacccggtccttt |
211 |
Q |
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| T |
30511480 |
gaataaagttagtattagttaaaaaggtttaatgtcaaatcaatgagaaatcaaatgacgtgtgtatgaatgtatttgccctaaaattacccggtccttt |
30511381 |
T |
|
| Q |
212 |
aatagcgaccgg----tagtaccactctaagtagcagtgtttataatgtaatctaatctgacctatttgttccaatagattctcattgcattttccaaag |
307 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
30511380 |
aatagcgaccggccggtagtaccactctaagtagcagtgtttataatgtaatctaatctgaccgatttgttacaatagattctcattgcattttccaaag |
30511281 |
T |
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| Q |
308 |
agttgctgagttaaaataatccctatatgatgtgtttgatggaatcaattatctattttatgatgtgagagaggcacgtcaagaattgttaagtgtactt |
407 |
Q |
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| T |
30511280 |
agttgctgagttaaaataatccctatatgatgtgtttgatggaatcaattatctattttatgatgtgagagaggcacgtcaagaattgtcaagtgtactt |
30511181 |
T |
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| Q |
408 |
tgaaagttacatttttaaaaaatttcaaaatta |
440 |
Q |
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|||||||||||||||||| |||||||||||||| |
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| T |
30511180 |
tgaaagttacatttttaagaaatttcaaaatta |
30511148 |
T |
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