View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19675_low_23 (Length: 458)
Name: NF19675_low_23
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19675_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 19 - 454
Target Start/End: Complemental strand, 7223477 - 7223042
Alignment:
| Q |
19 |
atacagacgcacagtcggttctctccagtacgccacaatcacccgacctgatattacgtatgcggtgaatcgcgtttgtcaatttatgcactcaccgaca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7223477 |
atacagacgcacagtcggttctctccagtacgccacaatcacccgacctgatattacgtatgcggtgaatcgcgtttgtcaatttatgcactcaccgaca |
7223378 |
T |
|
| Q |
119 |
cttgatcactggcgtgctgtcaaaagaatacttcgctatcttgctggaactctgtcacactctctccacttcagtccaactcaagcaacttcctttttag |
218 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7223377 |
cttgatcattggcgtgctgtcaaaagaatacttcgctatcttgctggaactctgtcacactctctccacttcagtccaactcaagcaacttcttttttag |
7223278 |
T |
|
| Q |
219 |
catattccgacgccggttggatctcggattccgacgacagccgctctcagtttggatatgcaatcttccatggatctaatctcatcagctggacttcccg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7223277 |
catattccgacgccggttggatctcggattccgacgacagccgctctcagtttggatatgcaatcttccatggatctaatctcatcagctggacttcccg |
7223178 |
T |
|
| Q |
319 |
caaacagaaagttgttgctcgctcaagcactgaggcggaatatcgatccctggcatacaccgccgccgaactgctttggctcaatcttcttgcttctgag |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7223177 |
caaacagaaagttgttgctcgctcaagcactgaggcggaatatcgatccctggcatacaccgccgccgaactgctttggctcaatcttcttgcttctgag |
7223078 |
T |
|
| Q |
419 |
cttcatgtgcctattactggtcctcctttgcttctc |
454 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||| |
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| T |
7223077 |
cttcatgtgcctattactggtcctccgttgcttctc |
7223042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 19 - 454
Target Start/End: Complemental strand, 27722413 - 27721978
Alignment:
| Q |
19 |
atacagacgcacagtcggttctctccagtacgccacaatcacccgacctgatattacgtatgcggtgaatcgcgtttgtcaatttatgcactcaccgaca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27722413 |
atacagacgcacagtcggttctctccagtacgccacaatcacccgacctgatattacgtatgcggtgaatcgcgtttgtcaatttatgcactcaccgaca |
27722314 |
T |
|
| Q |
119 |
cttgatcactggcgtgctgtcaaaagaatacttcgctatcttgctggaactctgtcacactctctccacttcagtccaactcaagcaacttcctttttag |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27722313 |
cttgatcactggcgtgctgtcaaaagaatacttcgttatcttgctggtactctgtcacactctctccacttcagtccaactcaagcaacttcctttttag |
27722214 |
T |
|
| Q |
219 |
catattccgacgccggttggatctcggattccgacgacagccgctctcagtttggatatgcaatcttccatggatctaatctcatcagctggacttcccg |
318 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27722213 |
catattcagacgccggttggatctcggattccgacgacagccgctctcagtttggatatgcaatcttccatggatctaatctcatcagctggacttcccg |
27722114 |
T |
|
| Q |
319 |
caaacagaaagttgttgctcgctcaagcactgaggcggaatatcgatccctggcatacaccgccgccgaactgctttggctcaatcttcttgcttctgag |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
27722113 |
caaacagaaagttgttgctcgctcaagcactgaggcggaatatcgatccctggcatacaccgccgccgaactgctttggctcaatcttcttgctgctgag |
27722014 |
T |
|
| Q |
419 |
cttcatgtgcctattactggtcctcctttgcttctc |
454 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
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|
| T |
27722013 |
cttcatgtgcctattactggtcctccgttgcttctc |
27721978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 19 - 454
Target Start/End: Complemental strand, 42606540 - 42606105
Alignment:
| Q |
19 |
atacagacgcacagtcggttctctccagtacgccacaatcacccgacctgatattacgtatgcggtgaatcgcgtttgtcaatttatgcactcaccgaca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42606540 |
atacagacgcacagtcggttctctccagtacgccacaatcacccgacctgatattacgtatgcggtgaatcgcgtttgtcaatttatgcactcaccgaca |
42606441 |
T |
|
| Q |
119 |
cttgatcactggcgtgctgtcaaaagaatacttcgctatcttgctggaactctgtcacactctctccacttcagtccaactcaagcaacttcctttttag |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42606440 |
cttgatcactggcgtgctgtcaaaagaatacttcgctatcttgctggtactctgtcacactctctccacttcagtccaactcaagcaacttcctttttag |
42606341 |
T |
|
| Q |
219 |
catattccgacgccggttggatctcggattccgacgacagccgctctcagtttggatatgcaatcttccatggatctaatctcatcagctggacttcccg |
318 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42606340 |
catattcagacgccggttggatctcggattccgacgacagccgctcgcagtttggatatgcaatcttccatggatctaatctcatcagctggacttcccg |
42606241 |
T |
|
| Q |
319 |
caaacagaaagttgttgctcgctcaagcactgaggcggaatatcgatccctggcatacaccgccgccgaactgctttggctcaatcttcttgcttctgag |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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|
| T |
42606240 |
caaacagaaagttgttgctcgctcaagcactgaggcggaatatcgatccctggcatacaccgccgctgaactgctttggctcaatcttcttgctgctgag |
42606141 |
T |
|
| Q |
419 |
cttcatgtgcctattactggtcctcctttgcttctc |
454 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
|
|
| T |
42606140 |
cttcatgtgcctattactggtcctccgttgcttctc |
42606105 |
T |
|
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