View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19675_low_24 (Length: 457)
Name: NF19675_low_24
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19675_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 435; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Complemental strand, 39578912 - 39578466
Alignment:
| Q |
1 |
aggatagttctagcagtgcttttgcatcacttcaattgcctaatgttcagcgtttaccttctctgtctaccctgactgaagtggatggcacgtctactgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39578912 |
aggatagttctagcagtgcttttgcatcacttcaattgcctaatgttcagcgtttaccttctctgtctaccctgactaaagtggatggcacgtctactgg |
39578813 |
T |
|
| Q |
101 |
gagggttgatgaatctgaaagtgcagcgctgacgatgctagacagaatttcatgcgaagaaaatcaagggacaacaatcaacacgcaagtgtctccatga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39578812 |
gagggttgatgaatctgaaagtgcagcgctgacgatgctagacagaatttcatgcgaagaaaatcaagggacaacaatcaacacgcaagtgtctccatga |
39578713 |
T |
|
| Q |
201 |
actgttttgtagatagctcacttctctgttttgtccctgtttcgccccttagttaatggttgttggtctgttctcaattgtaagattaataatggagtaa |
300 |
Q |
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| T |
39578712 |
actgttttgtagatagctcacttctctgttttgtccctgtttccccccttagttaatggttgttggtctgttctcaattgtaagattaataatggagtaa |
39578613 |
T |
|
| Q |
301 |
aacagtattcattttcaagtgattatatgaagatctatgtatggtagaatgttgtgattttcttccatgctaaatacaatttcaaatatgtcaaactgta |
400 |
Q |
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| T |
39578612 |
aacagtattcattttcaagtgattatatgaagatctatgtatggtagaatgttgtgattttcttccatgctaaatacaatttcaaatatgtcaaactgca |
39578513 |
T |
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| Q |
401 |
atttgagtaatcgtacttgtagtgtagtataattgttgaatcctatg |
447 |
Q |
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| T |
39578512 |
atttgagtaatcgtacttgtagtgtagtataattgttgaatcctatg |
39578466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 2 - 243
Target Start/End: Complemental strand, 39542543 - 39542302
Alignment:
| Q |
2 |
ggatagttctagcagtgcttttgcatcacttcaattgcctaatgttcagcgtttaccttctctgtctaccctgactgaagtggatggcacgtctactggg |
101 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
39542543 |
ggatagttctagcagtgcttttgcgtcacttcaattgcctaatgttcagcgtttaccttctctgtctgcactgactgaagtggatggcacgtctactggg |
39542444 |
T |
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| Q |
102 |
agggttgatgaatctgaaagtgcagcgctgacgatgctagacagaatttcatgcgaagaaaatcaagggacaacaatcaacacgcaagtgtctccatgaa |
201 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||| |
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| T |
39542443 |
agggttgatgaatctgaaagtgcagcgctgatgatgctagacagaatttcatgcgatgcaaatcaaggtacaacaatcaacacgcaagtgtctccatgag |
39542344 |
T |
|
| Q |
202 |
ctgttttgtagatagctcacttctctgttttgtccctgtttc |
243 |
Q |
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||||||| | ||| |||| ||||||||||||||| |||||| |
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| T |
39542343 |
ctgttttttcaatacctcatttctctgttttgtccttgtttc |
39542302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 39574379 - 39574183
Alignment:
| Q |
1 |
aggatagttctagcagtgcttttgcatcacttcaattgcctaatgttcagcgtttaccttctctgtctaccctgactgaagtggatggcacgtctactgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
39574379 |
aggatagttctagcagtgcttttgcatcacttcaattgcctaatgttcagcatttaccttctctgtctacaccgactgaagtggatggcacgtctactgg |
39574280 |
T |
|
| Q |
101 |
gagggttgatgaatctgaaagtgcagcgctgacgatgctagacagaatttcatgcgaagaaaatcaagggacaacaatcaacacgcaagtgtctcca |
197 |
Q |
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|||| |||||||||||||||||||| | ||| ||||||||| ||| |||||||||||| ||||||||| |||||||||||||||||| |||||||| |
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| T |
39574279 |
gaggattgatgaatctgaaagtgcaacattgatgatgctagatagactttcatgcgaagcaaatcaaggcacaacaatcaacacgcaaatgtctcca |
39574183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 39516532 - 39516437
Alignment:
| Q |
1 |
aggatagttctagcagtgcttttgcatcacttcaattgcctaatgttcagcgtttaccttctctgtctaccctgactgaagtggatggcacgtcta |
96 |
Q |
| |
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||||||||||||||||||||| || |||| |||||||||||||||||| ||||| |||||||||||||| |||| ||||| ||||| |||||||| |
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| T |
39516532 |
aggatagttctagcagtgcttctgtatcaattcaattgcctaatgttcgccgtttgccttctctgtctacactgagtgaaggggatgacacgtcta |
39516437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 39509464 - 39509378
Alignment:
| Q |
1 |
aggatagttctagcagtgcttttgcatcacttcaattgcctaatgttcagcgtttaccttctctgtctaccctgactgaagtggatg |
87 |
Q |
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|||||||||||| |||||||| || |||| |||||||||| ||||||| ||||||||||||||| ||| |||| ||||||||||| |
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| T |
39509464 |
aggatagttctaacagtgcttctgtatcaattcaattgcccaatgttcgccgtttaccttctctgaatacactgagtgaagtggatg |
39509378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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