View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19675_low_25 (Length: 448)
Name: NF19675_low_25
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19675_low_25 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 87 - 448
Target Start/End: Original strand, 16827568 - 16827929
Alignment:
| Q |
87 |
attactcaaaatttatcatacaaatcggcacttattttcaccttttaccaacgcgaaattttggttcaatctgtaggtgttaaacattagttcttacctg |
186 |
Q |
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| T |
16827568 |
attagtcaaaatttaccatacaaatcgacacttattttcaccttttaccaacgcgaaattttggtccaatgtataggtgttaaacattagttcttacctg |
16827667 |
T |
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| Q |
187 |
aagaaaatgaggagtatgaagaatgtctagatggaactccattaggataatagccataactaatgaaacacttatgcaaaaagatttcaccagaaataga |
286 |
Q |
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| T |
16827668 |
aagaaaatgaggagtatgaagaatgtctagatggaactccattaggataatagccataactaatgaaacacttatgcaaaaagatttcaccagaaataga |
16827767 |
T |
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| Q |
287 |
gttgccacattcaacttgagctctctgaacagcagttttcacacattgtccacaatcagagtcaccaatatcaccttcacattgtcccaagacataaaag |
386 |
Q |
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| T |
16827768 |
gttgccacattcaacttgagctctctgaacagcagttttcacacattgtccacaatcagagtcaccaatatcaccttcacattgtcccaaaacataaaag |
16827867 |
T |
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| Q |
387 |
gccatatagtttgttgtataaaaaccatgaccactaacaaccccaatttccattgctgataa |
448 |
Q |
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| T |
16827868 |
gccatatagtttgttgtataaaaaccatgaccactaacaaccccaatttccattgctgataa |
16827929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 218 - 367
Target Start/End: Original strand, 32532359 - 32532508
Alignment:
| Q |
218 |
tggaactccattaggataatagccataactaatgaaacacttatgcaaaaagatttcaccagaaatagagttgccacattcaacttgagctctctgaaca |
317 |
Q |
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| T |
32532359 |
tggaaccccattaggataataactaaaactaataaagcacttatgcaaataaatttgtcctgaaatagaacttccacattcaacttgagctctttgaaca |
32532458 |
T |
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| Q |
318 |
gcagttttcacacattgtccacaatcagagtcaccaatatcaccttcaca |
367 |
Q |
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| T |
32532459 |
gcagatttaacacactcaccacaatcagaatcaccaacatcaccttcaca |
32532508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 291 - 383
Target Start/End: Original strand, 16819777 - 16819867
Alignment:
| Q |
291 |
ccacattcaacttgagctctctgaacagcagttttcacacattgtccacaatcagagtcaccaatatcaccttcacattgtcccaagacataa |
383 |
Q |
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| T |
16819777 |
ccacattcaactagaacactgtgaacagcaattttcacaca--gtacacaatcagagtaaccaacatcaccttcatattgtcccaaaacataa |
16819867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 16827374 - 16827438
Alignment:
| Q |
2 |
gtcattctaatcctacaaatatcaac-gagcgacggatttgattaaaattgtataatttcggtga |
65 |
Q |
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| T |
16827374 |
gtcattctagtcctgcaaatatcaaccgagcgacggatttgatcaaaattgtacaatttcggtga |
16827438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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