View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19675_low_27 (Length: 429)
Name: NF19675_low_27
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19675_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 7e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 156 - 347
Target Start/End: Original strand, 26453517 - 26453706
Alignment:
| Q |
156 |
ctaaatggcattgaagagaggctaaaacaaacaacattgtcttcttcaacatcatagtgagatagtattgagagattcctcatatatattagagttttgc |
255 |
Q |
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| T |
26453517 |
ctaaatggcattgaagagaggctaaaacaaacaacattgtcttcttcaacatcataatgagatattattgagagattcctcatatatattagagttttgc |
26453616 |
T |
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| Q |
256 |
aaaactaaatatgcatataaggaaacttcataactataccaatatgtatggacaagactccatatatatcccatctcattcctcattttctt |
347 |
Q |
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| T |
26453617 |
aaaactaaatatgcatataaggaaacttcataactatacca--atgtatggacaagactccatatatatcccatctcattcctcattttctt |
26453706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 8 - 161
Target Start/End: Original strand, 26453251 - 26453425
Alignment:
| Q |
8 |
tcgaagaaaatattgagacttcttcttgatcagtaattccaatcatattccttcacctcgccaagatcaaacattgaaatatgttaaggaat-------- |
99 |
Q |
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| T |
26453251 |
tcgaagaaaatattgagacttcttcttgatcagtaattccaatcatattccttcacctcaccaagatcaaacattgaaatatgttaaggaataaaaaaaa |
26453350 |
T |
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| Q |
100 |
-------------aaaagattattaagaaagtcattaaaacaataagaatatcaaacataaaattcaatctaaat |
161 |
Q |
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| T |
26453351 |
aaatggaaagcgcaaaagattattaagaaagccattaaaacaataagaatatcaaacataaaattcaatcaaaat |
26453425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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