View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19675_low_28 (Length: 427)
Name: NF19675_low_28
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19675_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 1e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 15 - 178
Target Start/End: Complemental strand, 55331390 - 55331227
Alignment:
| Q |
15 |
aacaacatcaacatgatcacacttactgctacaacattaaccggtgttgtggccgcaagtggtgctattggcaccccacttttggctcttaaactatcat |
114 |
Q |
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| T |
55331390 |
aacaacatcaacatgatcacacttactgctacaacattaaccggtgttgtggctgcaagtggtgctattggcaccccacttttggctcttaaactatcat |
55331291 |
T |
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| Q |
115 |
ccacacttttattttctgcagctacaagtatacttcttatcatgaacaaaattcagccttcgca |
178 |
Q |
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| T |
55331290 |
ccacacttttattttctgcagctacaagtatacttcttattatgaacaaaattcagccttcgca |
55331227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 178
Target Start/End: Complemental strand, 55336828 - 55336665
Alignment:
| Q |
15 |
aacaacatcaacatgatcacacttactgctacaacattaaccggtgttgtggccgcaagtggtgctattggcaccccacttttggctcttaaactatcat |
114 |
Q |
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| T |
55336828 |
aacaacattaacatgattacactcactgctacaacattaacttgtattgcagccgcaactggtgctgatggtgcacaactgttggctctgaaactatcat |
55336729 |
T |
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| Q |
115 |
ccacacttttattttctgcagctacaagtatacttcttatcatgaacaaaattcagccttcgca |
178 |
Q |
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| T |
55336728 |
ccactcttctgttttcagcagcaactggtatgttgcttatcatgaacaagattcagccttcgca |
55336665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 271 - 425
Target Start/End: Original strand, 14681484 - 14681638
Alignment:
| Q |
271 |
aaggacaactacaaaattgaaacataccttcttgttacttgctgcatcttcagccaacttcactaacgtcgtaccttcttcggtaacatgctgcacatag |
370 |
Q |
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| T |
14681484 |
aaggacaactacaaaattgaaacataccttcttgttacttgctgcatcttcagccaacttcaccaacgtcgtaccttcttcggtaacatgctgcacatag |
14681583 |
T |
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| Q |
371 |
acaaaccatcaggaatgaaaggagaaatagactatgccccgattttcttcgacat |
425 |
Q |
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| T |
14681584 |
acaaaccatcaggaatgaaaggagaaatagactatgccccaattttgatcgacat |
14681638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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