View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19675_low_29 (Length: 424)
Name: NF19675_low_29
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19675_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 35565453 - 35565864
Alignment:
| Q |
1 |
ctattggtttatgcttgactttaagtaaagttcttcaataaaaaacttgacatatattaaaggaaatttctcactattttagaaaaataacaaaattgaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35565453 |
ctattggtttatgcttgactttaagtaaagttcttcaataaaa-acttgacatatattaaaggaaatttctcactattttagaaatataacaaaattgaa |
35565551 |
T |
|
| Q |
101 |
acttccatgttccaattcaatcttatgtgagttacctacctgtccataagctgttctctaggaggtgtaggaggcagagcaccactatattttcctctcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35565552 |
acttccatgttccaattcaatcttatgtgagttacctacctgtccataagctgttctctaggaggtgtaggaggcagagcaccactatattttcctctcc |
35565651 |
T |
|
| Q |
201 |
aatcaacttgatcacctgcatacttctttaaccattttctaaaaccaatcacaagagcatctgcctttgttggcacaaaacaggccttatgccaatttcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35565652 |
aatcaacttgatcacctgcatacttctttaaccattttctaaaaccaatcacaagagcatctgcctttgttggcacaaaacaggccttatgccaatttcc |
35565751 |
T |
|
| Q |
301 |
ttgaccaacatccattattttttgttcctat-nnnnnnnnnctagtaacattatttgaggaatgaaaaaacctaatctattgnnnnnnnntaccagtgat |
399 |
Q |
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| T |
35565752 |
ttgaccaacatccattattttttgttcctataaaaaaaaaactagtaacattatttgaggaatgaaaaaacctaatctattgaaaaaaaataccagtgat |
35565851 |
T |
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| Q |
400 |
tgaatttgatatt |
412 |
Q |
| |
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||||||||||||| |
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| T |
35565852 |
tgaatttgatatt |
35565864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 137 - 331
Target Start/End: Original strand, 35578731 - 35578925
Alignment:
| Q |
137 |
tacctgtccataagctgttctctaggaggtgtaggaggcagagcaccactatattttcctctccaatcaacttgatcacctgcatacttctttaaccatt |
236 |
Q |
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||||||||||||||||||||||| | |||||||||||| || || ||| |||||||||||||||| |||||||||||||||||||||||||||||||| | |
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| T |
35578731 |
tacctgtccataagctgttctctggaaggtgtaggaggaagggctccattatattttcctctccattcaacttgatcacctgcatacttctttaaccact |
35578830 |
T |
|
| Q |
237 |
ttctaaaaccaatcacaagagcatctgcctttgttggcacaaaacaggccttatgccaatttccttgaccaacatccattattttttgttcctat |
331 |
Q |
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| T |
35578831 |
ttctaaaaccaatcacaagagcatctgcctttgttggaacaaaacatgccttatgccaattggcttgaccaacatccaatattttcttttcctat |
35578925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 137 - 331
Target Start/End: Original strand, 35590794 - 35590988
Alignment:
| Q |
137 |
tacctgtccataagctgttctctaggaggtgtaggaggcagagcaccactatattttcctctccaatcaacttgatcacctgcatacttctttaaccatt |
236 |
Q |
| |
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|||||||||| ||| |||||||| |||||||||||||| || || ||| |||||||||||||||| ||||||| | |||||||||||||||| ||||| | |
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| T |
35590794 |
tacctgtccaaaagttgttctctgggaggtgtaggaggaagggctccattatattttcctctccattcaacttcaccacctgcatacttcttcaaccact |
35590893 |
T |
|
| Q |
237 |
ttctaaaaccaatcacaagagcatctgcctttgttggcacaaaacaggccttatgccaatttccttgaccaacatccattattttttgttcctat |
331 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
35590894 |
ttctaaaaccaatcacaagagcatctgcctttgttggaacaaaacatgccttatgccaattggcttgaccaacatccattatttttttttcctat |
35590988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 137 - 323
Target Start/End: Original strand, 35577454 - 35577631
Alignment:
| Q |
137 |
tacctgtccataagctgttctctaggaggtgtaggaggcagagcaccactatattttcctctccaatcaacttgatcacctgcatacttctttaaccatt |
236 |
Q |
| |
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|||||||||||||| |||||||| ||||||| | |||| || || ||| |||||| |||||||| ||||||| | ||||||||||||||||||| || | |
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| T |
35577454 |
tacctgtccataagttgttctctgggaggtgcaagaggaagggctccatcatatttccctctccattcaacttcaccacctgcatacttctttaagcact |
35577553 |
T |
|
| Q |
237 |
ttctaaaaccaatcacaagagcatctgcctttgttggcacaaaacaggccttatgccaatttccttgaccaacatccattatttttt |
323 |
Q |
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|||||||||||||||||| | ||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
35577554 |
ttctaaaaccaatcacaa--------gtctttgttggca-aaaacatgccttatgccaattggcttgaccaacatccattatttttt |
35577631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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