View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19675_low_3 (Length: 924)
Name: NF19675_low_3
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19675_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 475; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 1 - 559
Target Start/End: Complemental strand, 40061358 - 40060785
Alignment:
| Q |
1 |
agggaattttccagagaaagattgacaaactggatgagttttagttacaaaataaattctatccaaagacgcgaaataagataaacgggcaaaaatttca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
40061358 |
agggaattttccagagaaagattgacaaactggatgagttttagttacaaaataaattctatcctaagacgcgaaataagataaacgggcaaaaatttca |
40061259 |
T |
|
| Q |
101 |
atataaaccgcctctacctctaggtttggaccaagagaagtaatcttgggttctgtagctattaacgcttcctcacaaagctttacggccttgtgcaaat |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40061258 |
atataaaccgcctctacctctaggtttggaccaagagaagtaatcttaggttctgtagctattaacgcttcctcacaaagctttacggccttgtgcaaat |
40061159 |
T |
|
| Q |
201 |
ctttaagatgaccccacttcggctgcctaataattcctgcagtatatagcaaatatattaaaaaa--------------cacaattgtccagtgtaattt |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40061158 |
ctttaagatgaccccacttcggctgcctaataattcctgcagtatatagcaaatatattaaaaaatatatattaaaaaacacaattgtccagtgtaattt |
40061059 |
T |
|
| Q |
287 |
ctcttgtgcatataagaaataaactatgcatgtgatattattaatttatcttcttcgatgtattaccagtggtacattt-gtgatggctacaacatgaac |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
40061058 |
ctcttgtgcatataagaaataaactatgcatgtgatattattaatttatcttcttcgatgtattaccggtggtacattttgtgatggctacaacatgaac |
40060959 |
T |
|
| Q |
386 |
atcatatatttagtatgtaggctgaaggacataccatattcatcaatcggtgcatcaaaatcgtaacttgtagcaatgaatggtccgccggtacttcggt |
485 |
Q |
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| T |
40060958 |
aacatatatttagtatgtaggctgaaggacataccatattcatcaatcggtgcatcaaaatcgtaacttgtagcaatgaatggtccgccggtacttcggt |
40060859 |
T |
|
| Q |
486 |
caaagttggttcctccatggtactgtttttagtcaagcaatgaaaaatgatacaatatcagctaattcctctta |
559 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||| |||||||||||| ||||| ||||||||||||| |
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|
| T |
40060858 |
caaagttggttcctccatggtactgtttttgagcaggcaataaaaaatgatacagtatcaactaattcctctta |
40060785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 21 - 578
Target Start/End: Complemental strand, 40087228 - 40086665
Alignment:
| Q |
21 |
attgacaaactggatgagttttagttacaaaataaattctatccaaagacgcgaaataagat-----aaacgggcaaaaatttcaatataaaccgcctct |
115 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||| |||||||||||||||||||| || | |
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| T |
40087228 |
attgacaaaccagatgagttttagttacaaaataaattatatcctaagacgcggaataagatgtttcaaacgaacaaaaatttcaatataaaccatctat |
40087129 |
T |
|
| Q |
116 |
acctctaggtttggaccaagagaagtaatcttgggttctgtagctattaacgcttcctcacaaagctttacggccttgtgcaaatctttaagatgacccc |
215 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||| |||||||| ||||| ||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
40087128 |
acctctaggtttggaccaagataagtaatcttgggttctgcggctattaatgcttcttcacaaagctttatggccttgtgcacatctttaagatgacccc |
40087029 |
T |
|
| Q |
216 |
acttcggctgcctaataattcctgcagtatatagcaaatatattaaaaaacacaattgtccagtgtaatttctcttgtgcatataagaaataaactatgc |
315 |
Q |
| |
|
|||||||||||||||||| |||||||| || |||| || ||||||||||| |||| ||||||||||||||||||| | ||||||||||||||||||| | |
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| T |
40087028 |
acttcggctgcctaataactcctgcagcatgtagcgaagatattaaaaaatccaatcgtccagtgtaatttctcttctacatataagaaataaactatcc |
40086929 |
T |
|
| Q |
316 |
atgtgatattattaatttatcttcttcgatgtattaccagtggtacatttgtgatggctacaacatgaacatcatatattt-agtatgtaggctgaagga |
414 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| | |||||||| |||||||||||||||| ||| |||| | || | ||| ||||||| |
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|
| T |
40086928 |
atgtgatattatcaatttatcttcttcgatgtattaccagtgttgtatttgtgacggctacaacatgaaca--atagatttcaataagaaggttgaagga |
40086831 |
T |
|
| Q |
415 |
--cataccatattcatcaatcggtgcatcaaaatcgtaacttgtagcaatgaatggtccgccggtacttcggtcaaagttggttcctccatggtactgtt |
512 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
40086830 |
gtcataccatactcatcaatcggtgcatcaaaatcataacttgttgcaatgaatggtcctccagtacttcggtcaaagttggttcctccatggtactgtt |
40086731 |
T |
|
| Q |
513 |
tttagtcaagcaatgaaaaatgatacaatatcagctaattcctcttagagccaatttttcagtgaa |
578 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40086730 |
tttagtcaagcaatgaaaaatgatacagtatcagctaattcctcttagagccaatttttcagtgaa |
40086665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 309; E-Value: 1e-173
Query Start/End: Original strand, 586 - 906
Target Start/End: Original strand, 41103148 - 41103468
Alignment:
| Q |
586 |
aacctgtgaagcaacgacttgcgatctgatcggtgagtttgattccgacgaaaaaattgattcaatttgattccaattttctgaaatcgcttcgtataaa |
685 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41103148 |
aacctgtgaagcaacgacttgcgatctgatcggtgagtttgattccgacgaaaaaattgattcaatttgattccaattttctgaaatcgcttcgtataaa |
41103247 |
T |
|
| Q |
686 |
tcaagcgttctgaacattttctccggagttttcttgcattttgccacgttttccgggaatgcaaacagcatcagtgcgctttctctgcaaatatcagcga |
785 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
41103248 |
tcaagcgttctgaacattttctccggagttttcttgcattttgccacgttttccgggaatgcaaacagcattaatgcgctttctctgcaaatatcagcga |
41103347 |
T |
|
| Q |
786 |
aacacgattctccgatgttgttcttctccggcgaatcgaaaatataattgcagagtattctctcgccgtgaaacagagtgttaacggcgactttgacggc |
885 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41103348 |
aacacgattctccgatgttgttcttctccggcgaatcgaaaatataattgcagagtattctctcgccgtgaaacagagtgttaacggcgactttgacggc |
41103447 |
T |
|
| Q |
886 |
gtttaaccaacacttgatttt |
906 |
Q |
| |
|
||||||||||||||| ||||| |
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| T |
41103448 |
gtttaaccaacacttcatttt |
41103468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 90 - 578
Target Start/End: Complemental strand, 40079393 - 40078892
Alignment:
| Q |
90 |
caaaaatttcaatataaaccgcctctacctctaggtttggaccaagagaagtaatcttgggttctgtagctattaacgcttcctcacaaagctttacggc |
189 |
Q |
| |
|
|||||||||||||| | ||| ||| ||||||||||||| |||||||||| | ||||||||| || |||||||||| ||||| ||||||||||||| ||| |
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|
| T |
40079393 |
caaaaatttcaatacataccacctatacctctaggttttgaccaagagatgaaatcttgggatcagtagctattagtgcttcttcacaaagctttatggc |
40079294 |
T |
|
| Q |
190 |
cttgtgcaaatctttaagatgaccccacttcggctgcctaataattcctgcagtatatagcaaatatattaaaaa-acaca----attgtccagtgtaat |
284 |
Q |
| |
|
|||||| | ||||||||||||||||||||| ||||||||||||||||||||| ||||| | | |||||||| | ||||| ||||||||||||||| |
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|
| T |
40079293 |
cttgtgtacatctttaagatgaccccacttttgctgcctaataattcctgcagcgtatagtagagatattaaacacacacagaaaattgtccagtgtaat |
40079194 |
T |
|
| Q |
285 |
ttctcttgtgcatataagaaataaactatgcatgtgatattattaatttatcttcttcgatg-------tattaccagtggtacatttgtgatggctaca |
377 |
Q |
| |
|
||||||| | ||| |||||| |||||||| ||| |||||||||||||||||||||||| | ||||||||||||| |||||| |||||||||| |
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|
| T |
40079193 |
ttctcttctaaataaaagaaaataactatgcgtgtaatattattaatttatcttcttcgaggaccgaggtattaccagtggtgcatttgcgatggctaca |
40079094 |
T |
|
| Q |
378 |
acatgaacatcatatatttagtatgtaggctgaagga--cataccatattcatcaatcggtgcatcaaaatcgtaacttgtagcaatgaatggtccgccg |
475 |
Q |
| |
|
||||||||| ||||| | |||| ||| |||| || ||||||||| |||||||||||||||||| |||| ||||||||||||||||| ||||||||| |
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|
| T |
40079093 |
acatgaacaaaatatactc-gtattaaggttgaaagagtcataccatactcatcaatcggtgcatcataatcataacttgtagcaatgaaaggtccgccg |
40078995 |
T |
|
| Q |
476 |
gtacttcggtcaaagttggttcctccatggtactgtttttagtcaagcaatgaaaaatgatacaatatcagctaattcctcttagagccaatttttcagt |
575 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||| | ||| |||||||||||||||||||||||||||| || |
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|
| T |
40078994 |
gtacttcggtcaaagttggttcctccatggtactgtttttgggcaagcaataaaaaatgataaagtattagctaattcctcttagagccaatttttccgt |
40078895 |
T |
|
| Q |
576 |
gaa |
578 |
Q |
| |
|
||| |
|
|
| T |
40078894 |
gaa |
40078892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 6e-21; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 665 - 729
Target Start/End: Original strand, 23129044 - 23129108
Alignment:
| Q |
665 |
tctgaaatcgcttcgtataaatcaagcgttctgaacattttctccggagttttcttgcattttgc |
729 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
23129044 |
tctgaaattgcttcgtataaatcaagagttctgaacattttctcaggagttttcttgcattttgc |
23129108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 158 - 241
Target Start/End: Original strand, 22014230 - 22014313
Alignment:
| Q |
158 |
gctattaacgcttcctcacaaagctttacggccttgtgcaaatctttaagatgaccccacttcggctgcctaataattcctgca |
241 |
Q |
| |
|
||||| || ||||| ||||||||||||| |||||||||||||||||||||||||||||| || ||||| |||||| ||||||| |
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|
| T |
22014230 |
gctatcaatgcttcttcacaaagctttatggccttgtgcaaatctttaagatgaccccatttgggctgtctaatatctcctgca |
22014313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 415 - 514
Target Start/End: Original strand, 22014420 - 22014519
Alignment:
| Q |
415 |
cataccatattcatcaatcggtgcatcaaaatcgtaacttgtagcaatgaatggtccgccggtacttcggtcaaagttggttcctccatggtactgtttt |
514 |
Q |
| |
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||||||||| |||||||| ||||||||| |||| ||||| || | |||||| ||||| || || |||| ||||||| || ||||||||||||| |||| |
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| T |
22014420 |
cataccatactcatcaatgggtgcatcataatcataactcgttgaaatgaaaggtccacccgttgttcgaccaaagttagtccctccatggtactatttt |
22014519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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