View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19675_low_31 (Length: 415)

Name: NF19675_low_31
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19675_low_31
NF19675_low_31
[»] chr3 (11 HSPs)
chr3 (18-405)||(777959-778346)
chr3 (240-349)||(1186226-1186335)
chr3 (240-349)||(1204290-1204399)
chr3 (174-349)||(476034-476209)
chr3 (240-342)||(1304691-1304793)
chr3 (226-350)||(480945-481069)
chr3 (242-366)||(5361014-5361138)
chr3 (227-307)||(7125963-7126043)
chr3 (292-351)||(2996512-2996571)
chr3 (292-351)||(45870518-45870577)
chr3 (227-344)||(7118764-7118881)
[»] chr4 (1 HSPs)
chr4 (226-392)||(52186779-52186945)
[»] chr2 (4 HSPs)
chr2 (226-349)||(43864018-43864142)
chr2 (160-349)||(43867444-43867633)
chr2 (238-395)||(43875198-43875355)
chr2 (265-371)||(38989087-38989193)
[»] scaffold0438 (1 HSPs)
scaffold0438 (243-349)||(5312-5418)
[»] chr5 (2 HSPs)
chr5 (243-328)||(33958061-33958146)
chr5 (248-346)||(7894989-7895086)
[»] chr7 (5 HSPs)
chr7 (234-344)||(6889146-6889256)
chr7 (265-344)||(32413624-32413703)
chr7 (288-346)||(44501473-44501531)
chr7 (227-308)||(6844163-6844244)
chr7 (264-308)||(9235845-9235889)
[»] chr6 (6 HSPs)
chr6 (265-344)||(7115545-7115624)
chr6 (265-344)||(7120617-7120696)
chr6 (265-344)||(7124021-7124100)
chr6 (265-344)||(8656650-8656729)
chr6 (278-344)||(7140748-7140814)
chr6 (278-344)||(8680362-8680428)
[»] chr1 (2 HSPs)
chr1 (227-351)||(28928421-28928545)
chr1 (265-332)||(14288895-14288962)
[»] scaffold0896 (2 HSPs)
scaffold0896 (265-330)||(1471-1536)
scaffold0896 (265-330)||(2254-2319)


Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 18 - 405
Target Start/End: Original strand, 777959 - 778346
Alignment:
Q  18 aaagaagcatgatggaaaatgtttaatatcacaggggaaatccattatcaagtgctggacattgtgtgaaacaacgtatttaataatcctttggagtagg 117  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  777959 aaagaagcatgatggaaaatgattaatatcacaggggaaatccattatcaagtgctggacattgtgtgaaacaacgtatttaataatcctttggagtagg 778058  T
Q  118 ctatgctccatacaataattgtgcggaaagtcgagaacacggatagtgattgagccatcacgaagagacaaaatctgagaaacgaattcttcaaaactgt 217  Q
    ||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  778059 ctatgctccatacaataattgcgctgaaagtcaagaacacggatagtgattgagccatcacgaagagacaaaatctgagaaacgaattcttcaaaactgt 778158  T
Q  218 cggaggttctaaagtgtgaagaacttaatgtaagagtgggtagaattttccagagattgatccatcttttggacaaaatgcaagtttgaactgcctcttt 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  778159 cggaggttctaaagtgtgaagaacttaatgtaagagtgggtagaattttccagagattgatccatcttttggacaaaatgcaagtttggactgcctcttt 778258  T
Q  318 ggctttcaaaaaagatagtatgtgaaggagaacatcatctgtcaagtcattgattgtgtgtttatttttgttgtccttgcctcctatg 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  778259 ggctttcaaaaaagatagtatgtgaaggagaacatcatctgtcaagtcattgattgtgtgtttatttttgttgtccttgcctcttatg 778346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 240 - 349
Target Start/End: Complemental strand, 1186335 - 1186226
Alignment:
Q  240 acttaatgtaagagtgggtagaattttccagagattgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttcaaaaaagatagtatg 339  Q
    |||||||||||||||||  ||| | ||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||| || ||||||    
T  1186335 acttaatgtaagagtggaaagagtcttccagagattgatccatcttttcgataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatg 1186236  T
Q  340 tgaaggagaa 349  Q
    ||| ||||||    
T  1186235 tgatggagaa 1186226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 240 - 349
Target Start/End: Complemental strand, 1204399 - 1204290
Alignment:
Q  240 acttaatgtaagagtgggtagaattttccagagattgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttcaaaaaagatagtatg 339  Q
    |||||||||||||||||  ||| | ||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||| || ||||||    
T  1204399 acttaatgtaagagtggaaagagtcttccagagattgatccatcttttcgataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatg 1204300  T
Q  340 tgaaggagaa 349  Q
    ||| ||||||    
T  1204299 tgatggagaa 1204290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 174 - 349
Target Start/End: Complemental strand, 476209 - 476034
Alignment:
Q  174 atcacgaagagacaaaatctgagaaacgaattcttcaaaactgtcggaggttctaaagtgtgaagaacttaatgtaagagtgggtagaattttccagaga 273  Q
    |||||||||||| ||||||||||| |  ||||  || |||||   | |||| ||||||| ||||||||||| |||||| ||||| ||| | |||||||||    
T  476209 atcacgaagagagaaaatctgagacagaaattgatcgaaacttgtgcaggtcctaaagtttgaagaacttagtgtaagggtgggaagagtattccagaga 476110  T
Q  274 ttgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttcaaaaaagatagtatgtgaaggagaa 349  Q
    ||||||||||||||||| ||||| ||||||||||| || |||||||| || ||||| || ||| ||||||||||||    
T  476109 ttgatccatcttttggataaaatacaagtttgaacggcttctttggcgtttaaaaaggagagtgtgtgaaggagaa 476034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 240 - 342
Target Start/End: Original strand, 1304691 - 1304793
Alignment:
Q  240 acttaatgtaagagtgggtagaattttccagagattgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttcaaaaaagatagtatg 339  Q
    |||||||||||||||||  ||| | ||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||| || ||||||    
T  1304691 acttaatgtaagagtggaaagagtcttccagagattgatccatcttttcgataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatg 1304790  T
Q  340 tga 342  Q
    |||    
T  1304791 tga 1304793  T

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Target: chr3; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 226 - 350
Target Start/End: Complemental strand, 481069 - 480945
Alignment:
Q  226 ctaaagtgtgaagaacttaatgtaagagtgggtagaattttccagagattgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttca 325  Q
    ||||||| |||||||||||| ||||| ||||| ||| | |||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| || |    
T  481069 ctaaagtttgaagaacttaaggtaagcgtgggaagagtcttccagagattgatccatcttttggataaaatacaagtttgaacggcctctttggcgttta 480970  T
Q  326 aaaaagatagtatgtgaaggagaac 350  Q
    |||| || |||||| || |||||||    
T  480969 aaaaggagagtatgagatggagaac 480945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 242 - 366
Target Start/End: Original strand, 5361014 - 5361138
Alignment:
Q  242 ttaatgtaagagtgggtagaattttccagagattgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttcaaaaaagatagtatgtg 341  Q
    |||||| |||||| || ||| | |||||||||||| ||||||||||||| |||||||||||||| |  || | |||| | || ||||| || || |||||    
T  5361014 ttaatgcaagagttggaagagtcttccagagattggtccatcttttggataaaatgcaagtttggatggcttttttgacgtttaaaaaggagagcatgtg 5361113  T
Q  342 aaggagaacatcatctgtcaagtca 366  Q
    || | |||||||||| | |||||||    
T  5361114 aacgggaacatcatcggacaagtca 5361138  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 227 - 307
Target Start/End: Complemental strand, 7126043 - 7125963
Alignment:
Q  227 taaagtgtgaagaacttaatgtaagagtgggtagaattttccagagattgatccatcttttggacaaaatgcaagtttgaa 307  Q
    |||| ||||||||| |||||||||| || || |||  ||||||||||||  |||||||||||||||| || ||||||||||    
T  7126043 taaattgtgaagaaattaatgtaagggttggaagacgtttccagagattcttccatcttttggacaagatacaagtttgaa 7125963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 292 - 351
Target Start/End: Original strand, 2996512 - 2996571
Alignment:
Q  292 aaaatgcaagtttgaactgcctctttggctttcaaaaaagatagtatgtgaaggagaaca 351  Q
    |||||||||||||||||||| ||||| |  |||||||| || ||||||||||||| ||||    
T  2996512 aaaatgcaagtttgaactgcatcttttgtgttcaaaaatgaaagtatgtgaaggataaca 2996571  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 292 - 351
Target Start/End: Original strand, 45870518 - 45870577
Alignment:
Q  292 aaaatgcaagtttgaactgcctctttggctttcaaaaaagatagtatgtgaaggagaaca 351  Q
    |||| ||||||||||||||| |||||||| ||| |||| || ||||||||||||| ||||    
T  45870518 aaaacgcaagtttgaactgcgtctttggcattcgaaaacgacagtatgtgaaggataaca 45870577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 344
Target Start/End: Complemental strand, 7118881 - 7118764
Alignment:
Q  227 taaagtgtgaagaacttaatgtaagagtgggtagaattttccagagattgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttcaa 326  Q
    |||||||||||||| ||| |||||| ||||| |||   ||||| |||||  ||||||||||||| | |||  |||||||||| |  | |||| |||||||    
T  7118881 taaagtgtgaagaagttagtgtaagggtgggaagatgcttccatagatttttccatcttttggagagaatagaagtttgaacggtttgtttgactttcaa 7118782  T
Q  327 aaaagatagtatgtgaag 344  Q
    | | || |||||||||||    
T  7118781 agaggagagtatgtgaag 7118764  T

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Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 226 - 392
Target Start/End: Complemental strand, 52186945 - 52186779
Alignment:
Q  226 ctaaagtgtgaagaacttaatgtaagagtgggtagaattttccagagattgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttca 325  Q
    ||||||| ||||||||||| |||||||||||| ||| |  |||||||| ||||||||||||||||||||||||| |||||||| |||| ||| || ||||    
T  52186945 ctaaagtatgaagaacttagtgtaagagtgggaagactcctccagagaatgatccatcttttggacaaaatgcaggtttgaacggcctgttttgcgttca 52186846  T
Q  326 aaaaagatagtatgtgaaggagaacatcatctgtcaagtcattgattgtgtgtttatttttgttgtc 392  Q
     ||| || |||| ||| |||||||||  ||| ||||||||| ||||  ||| || ||||||||||||    
T  52186845 gaaaggagagtaggtggaggagaacagaatcagtcaagtcactgataatgtcttcatttttgttgtc 52186779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 226 - 349
Target Start/End: Original strand, 43864018 - 43864142
Alignment:
Q  226 ctaaagtgtgaagaacttaatgtaag-agtgggtagaattttccagagattgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttc 324  Q
    ||||||| |||||||||||||||||  ||| || ||| | ||||| |||||||||||||||||||||||||||||||||||||| |||| ||| || |||    
T  43864018 ctaaagtttgaagaacttaatgtaattagtaggaagactcttccaaagattgatccatcttttggacaaaatgcaagtttgaacggccttttttgcattc 43864117  T
Q  325 aaaaaagatagtatgtgaaggagaa 349  Q
    ||||| || |||||||||| |||||    
T  43864118 aaaaaggacagtatgtgaatgagaa 43864142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 160 - 349
Target Start/End: Original strand, 43867444 - 43867633
Alignment:
Q  160 atagtgattgagccatcacgaagagacaaaatctgagaaacgaattcttcaaaactgtcggaggttctaaagtgtgaagaacttaatgtaagagtgggta 259  Q
    |||||| |||||||||| |||||||| ||||  ||||| | ||||||  | ||||| |    ||| |||||||  |||||||||||||||| ||| || |    
T  43867444 atagtggttgagccatcgcgaagagataaaaagtgagacaggaattcggctaaacttttctcggtcctaaagttcgaagaacttaatgtaatagtaggaa 43867543  T
Q  260 gaattttccagagattgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttcaaaaaagatagtatgtgaaggagaa 349  Q
    ||   ||||||||| |||||||||||||||||||||||||||||||| | |||||||| || |||||||| || |||| ||||| |||||    
T  43867544 gacccttccagagagtgatccatcttttggacaaaatgcaagtttgagcggcctcttttgcgttcaaaaaggacagtacgtgaatgagaa 43867633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 238 - 395
Target Start/End: Original strand, 43875198 - 43875355
Alignment:
Q  238 gaacttaatgtaagagtgggtagaattttccagagattgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttcaaaaaagatagta 337  Q
    |||| ||||||||||||||| ||| | ||||| ||||||||||||||||||||||||||||||||||||||  ||||||| || || ||||| || | ||    
T  43875198 gaacataatgtaagagtgggaagactcttccaaagattgatccatcttttggacaaaatgcaagtttgaacgacctcttttgcatttaaaaaggacacta 43875297  T
Q  338 tgtgaaggagaacatcatctgtcaagtcattgattgtgtgtttatttttgttgtcctt 395  Q
    |||||| ||||| |  |||  |||||| | ||||  ||| || |||||||||||||||    
T  43875298 tgtgaatgagaatacaatcgatcaagttactgataatgtcttcatttttgttgtcctt 43875355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 265 - 371
Target Start/End: Complemental strand, 38989193 - 38989087
Alignment:
Q  265 ttccagagattgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttcaaaaaagatagtatgtgaaggagaacatcatctgtcaagt 364  Q
    ||||||||| ||||||||||||||||||||| ||| |||||||| |||| | | || || | ||| || |||||||||||||||||   ||| |||||||    
T  38989193 ttccagagaatgatccatcttttggacaaaacgcatgtttgaacagcctgtattgcgtttagaaaggacagtatgtgaaggagaaccgaatcggtcaagt 38989094  T
Q  365 cattgat 371  Q
    || ||||    
T  38989093 cactgat 38989087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 243 - 349
Target Start/End: Complemental strand, 5418 - 5312
Alignment:
Q  243 taatgtaagagtgggtagaattttccagagattgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttcaaaaaagatagtatgtga 342  Q
    ||||||||||||||| ||| | |||||||||||||||||||||||||| |||||||| |||||||| |||||| | |  |||||||| || |||||||||    
T  5418 taatgtaagagtgggaagagtcttccagagattgatccatcttttggataaaatgcatgtttgaacggcctctcttgtgttcaaaaaggacagtatgtga 5319  T
Q  343 aggagaa 349  Q
    | |||||    
T  5318 atgagaa 5312  T

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Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 243 - 328
Target Start/End: Original strand, 33958061 - 33958146
Alignment:
Q  243 taatgtaagagtgggtagaattttccagagattgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttcaaaa 328  Q
    ||||||||||||| | ||| | |||||||||||||||||||||||||| ||||||||||||||||| |||||| |||  |||||||    
T  33958061 taatgtaagagtgtgaagagtcttccagagattgatccatcttttggataaaatgcaagtttgaacggcctctctggtgttcaaaa 33958146  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 346
Target Start/End: Complemental strand, 7895086 - 7894989
Alignment:
Q  248 taagagtgggtagaattttccagagattgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttcaaaaaagatagtatgtgaagga 346  Q
    |||||| |||||||| ||||||||||||  |||||||  | ||||||||||||| |||||| || | |||||| |||||||| || || ||||||||||    
T  7895086 taagagcgggtagaagtttccagagattcttccatctgatagacaaaatgcaag-ttgaacggcttgtttggcattcaaaaaggaaagaatgtgaagga 7894989  T

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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 234 - 344
Target Start/End: Complemental strand, 6889256 - 6889146
Alignment:
Q  234 tgaagaacttaatgtaagagtgggtagaattttccagagattgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttcaaaaaagat 333  Q
    ||||||||||||| |||| || || |||  ||||||||||||| ||||||||||||| | ||||||||||||||| || ||| |||  | |||||||||     
T  6889256 tgaagaacttaatataagggtaggaagatatttccagagattgttccatcttttggatagaatgcaagtttgaacagcgtctatggtgtccaaaaaagag 6889157  T
Q  334 agtatgtgaag 344  Q
    |||||||||||    
T  6889156 agtatgtgaag 6889146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 265 - 344
Target Start/End: Complemental strand, 32413703 - 32413624
Alignment:
Q  265 ttccagagattgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttcaaaaaagatagtatgtgaag 344  Q
    |||||||||||  |||||||| |||||||||||||||||||||| || | |||||  |||||| | || |||||||||||    
T  32413703 ttccagagattcttccatcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaag 32413624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 346
Target Start/End: Original strand, 44501473 - 44501531
Alignment:
Q  288 ggacaaaatgcaagtttgaactgcctctttggctttcaaaaaagatagtatgtgaagga 346  Q
    ||||||||||||||| ||||| || | |||||| ||||||||||| |||||||||||||    
T  44501473 ggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaagga 44501531  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 227 - 308
Target Start/End: Complemental strand, 6844244 - 6844163
Alignment:
Q  227 taaagtgtgaagaacttaatgtaagagtgggtagaattttccagagattgatccatcttttggacaaaatgcaagtttgaac 308  Q
    ||||||||||||   | ||| |||||||||| |||  |||||| |||||| ||||||||||||| | |||||||||||||||    
T  6844244 taaagtgtgaagtcttcaatataagagtgggaagatgtttccaaagattgttccatcttttggatagaatgcaagtttgaac 6844163  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 308
Target Start/End: Original strand, 9235845 - 9235889
Alignment:
Q  264 tttccagagattgatccatcttttggacaaaatgcaagtttgaac 308  Q
    |||||| |||||| ||||||||||||| | |||||||||||||||    
T  9235845 tttccaaagattgttccatcttttggagagaatgcaagtttgaac 9235889  T

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Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 265 - 344
Target Start/End: Original strand, 7115545 - 7115624
Alignment:
Q  265 ttccagagattgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttcaaaaaagatagtatgtgaag 344  Q
    |||||||||||  ||||||||||||||||||  |||||||||||||| | |||||  ||||||||||| |||||||||||    
T  7115545 ttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaag 7115624  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 265 - 344
Target Start/End: Original strand, 7120617 - 7120696
Alignment:
Q  265 ttccagagattgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttcaaaaaagatagtatgtgaag 344  Q
    |||||||||||  ||||||||||||||||||  |||||||||||||| | |||||  ||||||||||| |||||||||||    
T  7120617 ttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaag 7120696  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 265 - 344
Target Start/End: Original strand, 7124021 - 7124100
Alignment:
Q  265 ttccagagattgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttcaaaaaagatagtatgtgaag 344  Q
    |||||||||||  ||||||||||||||||||  |||||||||||||| | |||||  ||||||||||| |||||||||||    
T  7124021 ttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaag 7124100  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 344
Target Start/End: Original strand, 8656650 - 8656729
Alignment:
Q  265 ttccagagattgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttcaaaaaagatagtatgtgaag 344  Q
    |||||||||||  |||||||||||| |||||  |||||||||||||| | |||||  ||||||||||| |||||||||||    
T  8656650 ttccagagattcttccatcttttggccaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaag 8656729  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 278 - 344
Target Start/End: Original strand, 7140748 - 7140814
Alignment:
Q  278 tccatcttttggacaaaatgcaagtttgaactgcctctttggctttcaaaaaagatagtatgtgaag 344  Q
    ||||||||||||||||||| |||||||||||||| | ||| |  ||||||||||| |||||||||||    
T  7140748 tccatcttttggacaaaatacaagtttgaactgcgtatttagtattcaaaaaagagagtatgtgaag 7140814  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 278 - 344
Target Start/End: Original strand, 8680362 - 8680428
Alignment:
Q  278 tccatcttttggacaaaatgcaagtttgaactgcctctttggctttcaaaaaagatagtatgtgaag 344  Q
    ||||||||||||||||||| |||||||||||||| | ||| |  ||||||||||| |||||||||||    
T  8680362 tccatcttttggacaaaatacaagtttgaactgcgtatttagtattcaaaaaagagagtatgtgaag 8680428  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 227 - 351
Target Start/End: Original strand, 28928421 - 28928545
Alignment:
Q  227 taaagtgtgaagaacttaatgtaagagtgggtagaattttccagagattgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttcaa 326  Q
    |||| ||||| | |||||||||||| ||||| |||   |||||||||||  ||||||   |||| |  |||||||||||||| || ||||||||||| ||    
T  28928421 taaaatgtgagggacttaatgtaagggtgggaagacgcttccagagattcttccatcgagtggagagtatgcaagtttgaacagcttctttggcttttaa 28928520  T
Q  327 aaaagatagtatgtgaaggagaaca 351  Q
    |||||||| ||||||||| ||||||    
T  28928521 aaaagataatatgtgaagtagaaca 28928545  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 265 - 332
Target Start/End: Original strand, 14288895 - 14288962
Alignment:
Q  265 ttccagagattgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttcaaaaaaga 332  Q
    |||||||||||  ||||||||||||| |  |||||||||||||| || | ||||| ||||||||||||    
T  14288895 ttccagagattcttccatcttttggagagtatgcaagtttgaacggcgtatttggttttcaaaaaaga 14288962  T

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Target: scaffold0896 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 330
Target Start/End: Complemental strand, 1536 - 1471
Alignment:
Q  265 ttccagagattgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttcaaaaaa 330  Q
    |||||||||||  |||||||||||| |||||  |||||||||||||| | |||||  |||||||||    
T  1536 ttccagagattcttccatcttttggccaaaacacaagtttgaactgcgtatttggtgttcaaaaaa 1471  T

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Target: scaffold0896; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 330
Target Start/End: Complemental strand, 2319 - 2254
Alignment:
Q  265 ttccagagattgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttcaaaaaa 330  Q
    |||||||||||  |||||||||||| |||||  |||||||||||||| | |||||  |||||||||    
T  2319 ttccagagattcttccatcttttggccaaaacacaagtttgaactgcgtatttggtgttcaaaaaa 2254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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