View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19675_low_32 (Length: 406)
Name: NF19675_low_32
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19675_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 4687075 - 4687437
Alignment:
| Q |
1 |
ctggtattagtcattgttttgtttgaagtttattattacagacaataagattggatatatgtctactcatatttcttttttatgaatggcaatgtgtttt |
100 |
Q |
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| T |
4687075 |
ctggtattagtcattgttttgtttgaagtttattattacagacaataagattggatatatgtctactcatatttcttttttatgaacggcaatgtgtttt |
4687174 |
T |
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| Q |
101 |
ctcggactattgtttttgtatatttcttttggttgctattacattatcctttgtcttataatttgaaatgttggcaacatcatacataagggaatttctt |
200 |
Q |
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| T |
4687175 |
ctcggactattgtttttgtatatttcttttggttgctattacattatcctttgtcttataatttgaaatgttggcaacatcatacataagggaatttctt |
4687274 |
T |
|
| Q |
201 |
gtatgaaaattacgataaaacacagttggtcgtgattacaaaagaggttaaaatatttgatattgtgactgagattattagaaataaaaaagttagttat |
300 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4687275 |
gtatgaaaattacgataaaacacagttggttgtgattacaaaagaggttaaaatatttgatattgtgactgagattattagaaataaaaaagttagttat |
4687374 |
T |
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| Q |
301 |
agctgtcagttacactagttagtataactaacttttatatttaataggtatagtaattgaaag |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4687375 |
agctgtcagttacactagttagtataactaacttttatatttaataggtatagtaattgaaag |
4687437 |
T |
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