View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19675_low_34 (Length: 399)
Name: NF19675_low_34
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19675_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 13 - 382
Target Start/End: Complemental strand, 3710464 - 3710083
Alignment:
| Q |
13 |
aatattcatgacaattaatagacatcacttacaatattcatatatttcatataataaagtaaaagttagcttaatcggtatttatttatattgcaatcga |
112 |
Q |
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| T |
3710464 |
aatattcatgacaattaatagacatcacttacaatattcatatatttcatataataaagtaaaagttagcttaatcagtatttatttatattgcaatcga |
3710365 |
T |
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| Q |
113 |
aatagccctttgaaaacaaaatgnnnnnnnncacaaaactaatcaaaaccagaacactagagattaaccggaatcaaaccttccacgagatccatcccaa |
212 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3710364 |
aatagccctttgaaaacaaaatgttttttttcacaaaactaatcaaaaccagaacactagagattaaccggaatcaaaccttccacgagatccatcccaa |
3710265 |
T |
|
| Q |
213 |
gaagaagaaacagaagcacgcggatccaacccaagattctgagacgtcaaaatcaaatc------------cgacgaaccagaaacatcatcattctctc |
300 |
Q |
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| T |
3710264 |
gaagaagaaacagaagcacgcggatccaacccaagattctgagacgtcaaaatcaaatccgaagcacaaaacgacgaaccagaaacatcatcattctctc |
3710165 |
T |
|
| Q |
301 |
taacttccttctcctcttttccatcttcatcctcattcttaggttcaaacaaaagcttctcaaaagccttaaccaaattctg |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3710164 |
taacttccttctcctcttttccatcttcatcctcattcttaggttcaaacaaaagcttctcaaaagccttaaccaaattctg |
3710083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 306 - 382
Target Start/End: Original strand, 5326790 - 5326866
Alignment:
| Q |
306 |
tccttctcctcttttccatcttcatcctcattcttaggttcaaacaaaagcttctcaaaagccttaaccaaattctg |
382 |
Q |
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|||| |||||||| || ||| ||| |||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
5326790 |
tcctcctcctcttatcgatcatcaccctcattcttaggttcaaacaaaaacttctcaaaagccttaaccaaactctg |
5326866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 146 - 273
Target Start/End: Original strand, 5326634 - 5326760
Alignment:
| Q |
146 |
caaaactaatcaaaaccagaacactagagattaaccggaatcaaaccttccacgagatccatcccaagaagaagaaacagaagcacgcggatccaaccca |
245 |
Q |
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||||| |||||||||| |||| |||| |||||| | ||| ||||||||||| |||| ||||||| || || |||| |||||| | |||||||||||| |
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| T |
5326634 |
caaaattaatcaaaact-gaacgctagtgattaagcaaaattaaaccttccacaagatacatcccaggatgacgaaatggaagcatgtggatccaaccca |
5326732 |
T |
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| Q |
246 |
agattctgagacgtcaaaatcaaatccg |
273 |
Q |
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||||||||| | ||||||| |||||||| |
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| T |
5326733 |
agattctgaaatgtcaaaaccaaatccg |
5326760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 331 - 382
Target Start/End: Complemental strand, 37283461 - 37283410
Alignment:
| Q |
331 |
cctcattcttaggttcaaacaaaagcttctcaaaagccttaaccaaattctg |
382 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
37283461 |
cctcattcttaggttcaaacaaaaacttctcaaaagccttaaccaaactctg |
37283410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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