View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19675_low_38 (Length: 374)
Name: NF19675_low_38
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19675_low_38 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 9 - 374
Target Start/End: Complemental strand, 9471159 - 9470794
Alignment:
| Q |
9 |
aatatcataacgcacttacaatgtcatgaaatagacttccaatacatatattgactgatgtgtcttgtaatgataatgacatcaaaatctgctcacttag |
108 |
Q |
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| T |
9471159 |
aatatcataacgcacttacaatttcatgaaatagacttccaatacatatattgactgatgtgtcttgtaatgataatgacatcaaaatatgctcacttag |
9471060 |
T |
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| Q |
109 |
tttccaattcacctgcaaacattcaaaaatatcaacagtttgagagacacatgtgtgtttatattaacagatataactaaacattataatgtttcaattt |
208 |
Q |
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| T |
9471059 |
tttccaattcacctgcaaacattcaaaaatatcaacagtttgagagacacatgtgtgtttatattaacagatataactaaacattataatgtttcaattt |
9470960 |
T |
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| Q |
209 |
tcttcnnnnnnnnntgtttcaatttgaaatctgcatgtcaacttgaacataccaataactattatgccattcaaaccaacaaacagattgagcagcgtgt |
308 |
Q |
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| T |
9470959 |
tcttcaaaaaaaaatgtttcaatttgaaatctgcatgtcaacttgaacataccaataactattatgccattcaaaccaacaaacagattgagcagcgtgt |
9470860 |
T |
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| Q |
309 |
atcgctcatcagtggttctactcaggcacctagtttcttctgtacgaagcatataaagctaataac |
374 |
Q |
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| T |
9470859 |
atcgctcatcagtggttctactcaggcacctagtttcttctgtacgaagcatataaagctaataac |
9470794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 10 - 151
Target Start/End: Complemental strand, 53693065 - 53692926
Alignment:
| Q |
10 |
atatcataacgcacttacaatgtcatgaaatagacttccaatacatatattgactgatgtgtcttgtaatgataatgacatcaaaatctgctcacttagt |
109 |
Q |
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||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||| |||||||| | |
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| T |
53693065 |
atatcataatgcacttccaatgtcatgaaatagacttccaatacatatattgactaatgtgtc-tgtattgataatgacatcaaaatcttctcacttaat |
53692967 |
T |
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| Q |
110 |
ttccaattcacctgcaaacattcaaaaatatcaacagtttga |
151 |
Q |
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| T |
53692966 |
tcccaattcacgtgcaaacatt-aaacatatcaacagtttga |
53692926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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