View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19675_low_4 (Length: 895)

Name: NF19675_low_4
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19675_low_4
NF19675_low_4
[»] chr3 (28 HSPs)
chr3 (19-889)||(38626070-38626940)
chr3 (130-205)||(39657982-39658057)
chr3 (131-209)||(42644300-42644379)
chr3 (169-215)||(48089641-48089687)
chr3 (131-234)||(30958105-30958209)
chr3 (131-234)||(30973917-30974021)
chr3 (171-209)||(7012678-7012716)
chr3 (173-211)||(24916576-24916614)
chr3 (131-209)||(31766160-31766238)
chr3 (171-208)||(10852738-10852775)
chr3 (171-208)||(23918881-23918918)
chr3 (171-228)||(50664777-50664834)
chr3 (173-228)||(1441362-1441417)
chr3 (131-218)||(25181239-25181326)
chr3 (130-209)||(32112088-32112167)
chr3 (162-209)||(40415312-40415359)
chr3 (130-209)||(44225603-44225682)
chr3 (123-202)||(49158621-49158700)
chr3 (173-231)||(3776594-3776652)
chr3 (167-209)||(7899143-7899185)
chr3 (167-209)||(16246115-16246157)
chr3 (171-209)||(23496355-23496393)
chr3 (131-209)||(41115275-41115353)
chr3 (167-209)||(52931593-52931635)
chr3 (172-209)||(31084245-31084282)
chr3 (171-224)||(34561131-34561184)
chr3 (173-226)||(41591308-41591361)
chr3 (172-217)||(49526695-49526740)
[»] chr8 (21 HSPs)
chr8 (477-708)||(34622376-34622607)
chr8 (168-234)||(2764419-2764485)
chr8 (173-228)||(15206723-15206778)
chr8 (171-209)||(19649232-19649270)
chr8 (131-226)||(32994153-32994250)
chr8 (173-234)||(16972019-16972080)
chr8 (173-217)||(32767475-32767519)
chr8 (171-206)||(10552934-10552969)
chr8 (131-234)||(18123295-18123398)
chr8 (130-209)||(29970848-29970927)
chr8 (131-234)||(32927961-32928064)
chr8 (187-234)||(43492206-43492253)
chr8 (171-209)||(22936818-22936856)
chr8 (171-209)||(31246340-31246378)
chr8 (172-218)||(33588757-33588803)
chr8 (130-208)||(38715193-38715271)
chr8 (171-209)||(43550937-43550975)
chr8 (173-234)||(36447703-36447764)
chr8 (172-209)||(36779437-36779474)
chr8 (144-209)||(38516344-38516409)
chr8 (174-215)||(38875211-38875252)
[»] chr7 (18 HSPs)
chr7 (131-231)||(40491650-40491750)
chr7 (132-217)||(15311189-15311274)
chr7 (169-234)||(40561709-40561774)
chr7 (167-207)||(26975305-26975345)
chr7 (173-233)||(45557435-45557495)
chr7 (174-228)||(18350120-18350174)
chr7 (131-205)||(42481803-42481877)
chr7 (173-217)||(29829324-29829368)
chr7 (171-215)||(38230121-38230165)
chr7 (171-209)||(42752203-42752241)
chr7 (171-209)||(48459769-48459807)
chr7 (172-209)||(4228606-4228643)
chr7 (171-208)||(10371970-10372007)
chr7 (173-234)||(12306792-12306853)
chr7 (171-208)||(20088929-20088966)
chr7 (174-235)||(22310415-22310476)
chr7 (173-234)||(27571931-27571992)
chr7 (252-320)||(45369107-45369176)
[»] chr2 (17 HSPs)
chr2 (174-234)||(15220817-15220877)
chr2 (172-217)||(3853939-3853984)
chr2 (173-234)||(16518847-16518908)
chr2 (130-209)||(12110921-12111000)
chr2 (167-209)||(11005710-11005752)
chr2 (171-209)||(23359953-23359991)
chr2 (144-200)||(3716571-3716627)
chr2 (173-209)||(10918650-10918686)
chr2 (167-234)||(32307153-32307220)
chr2 (130-201)||(40704682-40704753)
chr2 (171-209)||(1945062-1945100)
chr2 (171-209)||(23377551-23377589)
chr2 (167-209)||(31224727-31224769)
chr2 (130-207)||(10618862-10618939)
chr2 (171-208)||(30007576-30007613)
chr2 (172-209)||(34433330-34433367)
chr2 (172-209)||(42089552-42089589)
[»] chr4 (21 HSPs)
chr4 (167-234)||(22683933-22684000)
chr4 (130-218)||(39000531-39000619)
chr4 (131-209)||(38740287-38740365)
chr4 (130-228)||(43868211-43868309)
chr4 (173-234)||(33843780-33843841)
chr4 (172-209)||(36150627-36150664)
chr4 (130-207)||(48575480-48575557)
chr4 (174-215)||(54487248-54487289)
chr4 (173-233)||(25927376-25927436)
chr4 (252-314)||(2171738-2171801)
chr4 (175-234)||(17898085-17898144)
chr4 (167-234)||(25319117-25319184)
chr4 (167-206)||(46382869-46382908)
chr4 (171-209)||(16566328-16566366)
chr4 (171-209)||(22699765-22699803)
chr4 (171-209)||(22980727-22980765)
chr4 (171-209)||(22994314-22994352)
chr4 (167-209)||(41866177-41866219)
chr4 (167-209)||(52062999-52063041)
chr4 (172-209)||(14597650-14597687)
chr4 (171-208)||(28947774-28947811)
[»] chr6 (14 HSPs)
chr6 (169-231)||(882758-882820)
chr6 (124-230)||(1499973-1500079)
chr6 (167-206)||(25208723-25208762)
chr6 (130-239)||(3524989-3525098)
chr6 (131-235)||(8856375-8856479)
chr6 (136-188)||(9043722-9043774)
chr6 (167-207)||(20846423-20846463)
chr6 (179-235)||(34620954-34621010)
chr6 (179-235)||(34748391-34748447)
chr6 (173-235)||(434192-434254)
chr6 (167-209)||(16442371-16442413)
chr6 (171-209)||(16548177-16548215)
chr6 (172-209)||(7486524-7486561)
chr6 (172-228)||(8551118-8551175)
[»] chr1 (25 HSPs)
chr1 (171-209)||(29759713-29759751)
chr1 (142-196)||(47307505-47307559)
chr1 (131-208)||(13344836-13344913)
chr1 (173-234)||(34915135-34915196)
chr1 (173-234)||(35961437-35961498)
chr1 (145-209)||(4347036-4347100)
chr1 (172-228)||(7301834-7301890)
chr1 (167-207)||(7335901-7335941)
chr1 (123-234)||(12655314-12655424)
chr1 (173-235)||(5268287-5268349)
chr1 (171-228)||(44786871-44786928)
chr1 (133-209)||(3887364-3887439)
chr1 (167-207)||(32365143-32365183)
chr1 (183-234)||(213246-213297)
chr1 (131-210)||(40642990-40643069)
chr1 (179-234)||(48548975-48549030)
chr1 (171-209)||(1199889-1199927)
chr1 (171-209)||(20800303-20800341)
chr1 (171-217)||(33693088-33693134)
chr1 (171-209)||(35569228-35569266)
chr1 (171-209)||(40352453-40352491)
chr1 (171-209)||(48510970-48511008)
chr1 (173-207)||(50751256-50751290)
chr1 (173-234)||(7524182-7524243)
chr1 (128-205)||(26253024-26253101)
[»] scaffold0172 (1 HSPs)
scaffold0172 (130-209)||(15241-15320)
[»] chr5 (19 HSPs)
chr5 (134-217)||(29922986-29923069)
chr5 (167-209)||(2483732-2483774)
chr5 (167-209)||(2868371-2868413)
chr5 (179-217)||(4306598-4306636)
chr5 (171-209)||(22811078-22811116)
chr5 (174-207)||(24036627-24036660)
chr5 (146-206)||(5465398-5465458)
chr5 (146-206)||(6988217-6988277)
chr5 (252-315)||(10898672-10898736)
chr5 (167-231)||(10957205-10957268)
chr5 (167-234)||(28304821-28304888)
chr5 (171-209)||(19784865-19784903)
chr5 (171-209)||(22482241-22482279)
chr5 (171-205)||(35816985-35817019)
chr5 (255-324)||(38045390-38045460)
chr5 (146-235)||(10273268-10273357)
chr5 (252-316)||(29922575-29922640)
chr5 (172-213)||(40885259-40885300)
chr5 (172-209)||(43152386-43152423)
[»] scaffold0393 (1 HSPs)
scaffold0393 (252-317)||(12378-12444)
[»] scaffold0361 (1 HSPs)
scaffold0361 (179-235)||(14075-14131)
[»] scaffold0031 (1 HSPs)
scaffold0031 (167-208)||(99701-99742)
[»] scaffold0009 (1 HSPs)
scaffold0009 (171-208)||(199394-199431)
[»] scaffold0005 (1 HSPs)
scaffold0005 (172-209)||(219691-219728)


Alignment Details
Target: chr3 (Bit Score: 822; Significance: 0; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 822; E-Value: 0
Query Start/End: Original strand, 19 - 889
Target Start/End: Complemental strand, 38626940 - 38626070
Alignment:
Q  19 aattgcaggtatttgattcgtttaacccgactcgtctgctgtcattgcaagttccaacagcagtattgcatagaagttgcttgtgtatttgtctctaact 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  38626940 aattgcaggtatttgattcgtttaacccgactcgtctgctgtcattgcaagttccaacagtagtattgcatagaagttgcttgtgtatttgtctctaact 38626841  T
Q  119 gaatgtgacataaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcac 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  38626840 gaatgtgacataaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtgaaatgatttatgtttggacatattcac 38626741  T
Q  219 gtagaagtgagttgaaagatacaaattcaagtctcaagttataatcaattcccgaggcaaaatcaattttactggaaacatccaaacatgtcaaaataaa 318  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38626740 gtggaagtgagttgaaagatacaaattcaagtctcaagttataatcaattcccgaggcaaaatcaattttactggaaacatccaaacatgtcaaaataaa 38626641  T
Q  319 atttgctccatccaaaattgagacgaaacacacacataattttctgtgtgtctttaattttttaatcttatgttgtttctttcgtgtacctgctagtgtt 418  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38626640 atttgctccatccaaaattgagacgaaacgcacacataattttctgtgtgtctttaattttttaatcttatgttgtttctttcgtgtacctgctagtgtt 38626541  T
Q  419 aaacatggcttgtttcttgttccagattgatttgatgggattattaaggcaatcaaagtattggcaaaggtctggaggtagagaccacatatttcctatg 518  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38626540 aaacatggcttgtttcttgttccagattgatttgatgggattattagggcaatcaaagtattggcaaaggtctggaggtagagaccacatatttcctatg 38626441  T
Q  519 acacatcccaatgcatttaggttcttgcgagatcagctgaacgagtctattcaggttgttgttgattttggccgttaccccaaaggtgtatctaatttga 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38626440 acacatcccaatgcatttaggttcttgcgagatcagctgaacgagtctattcaggttgttgttgattttggccgttaccccaaaggtgtatctaatttga 38626341  T
Q  619 acaaggatgtagtgtccccatatgtacatttcgtagattcttatgtagatgatgagcctcatgatccgtttgagtctcgcaccacactgcnnnnnnncag 718  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||    
T  38626340 acaaggatgtagtgtccccatatgtacatttcgtagattcttatgtagatgatgagcctcatgatccgtttgagtctcgcaccacactgctttttttcag 38626241  T
Q  719 aggggggacacaccgtaaggatgtatgtatttatgttgatgagatttaattgaaggaataatgctgacctccttatacttacaggcaacttgatttttgg 818  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  38626240 aggggggacacaccgtaaggatgtatgtatttatgttgatgagatttaattgaaggaataatgctgacttccttatacttacaggcaacttgatttttgg 38626141  T
Q  819 ggtgtgtcatgtttgcagaaaggcattgttcgtgctaaattcacaaagatattagctggttttgatgatgt 889  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38626140 ggtgtgtcatgtttgcagaaaggcattgttcgtgctaaattcacaaagatattagctggttttgatgatgt 38626070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 205
Target Start/End: Original strand, 39657982 - 39658057
Alignment:
Q  130 aaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtt 205  Q
    ||||||||||| ||| ||||||||||||||| | || |||| ||||||||  |||||||||||||| |||||||||    
T  39657982 aaattgattttgaataaattgattatgtaaaattgattttacttaaaagttcgttgaatgtaaaataatttatgtt 39658057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 209
Target Start/End: Complemental strand, 42644379 - 42644300
Alignment:
Q  131 aattgatttttaatgaattgattatgtaaag-tcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    |||||||||| | |||||||||| | ||||  | || ||||||||||||||||||||||||||| |||||||||||||||    
T  42644379 aattgattttgagtgaattgattttataaaaattgattttagttaaaagtgagttgaatgtaaagtgatttatgtttgga 42644300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 48089641 - 48089687
Alignment:
Q  169 tagttaaaagtgagttgaatgtaaaatgatttatgtttggacacatt 215  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||    
T  48089641 tagttaaaagtgagttgaatgtaaaatgatttatgattggatacatt 48089687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 234
Target Start/End: Complemental strand, 30958209 - 30958105
Alignment:
Q  131 aattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaa-atgatttatgtttggacacattcacgtagaagtgag 229  Q
    |||||||||| |||||||||||| |||||| | || ||| | |||| ||||||||||||||||  | ||||||||||||| | ||||| ||| ||||||     
T  30958209 aattgattttgaatgaattgattttgtaaaattgattttggctaaatgtgagttgaatgtaaagtttatttatgtttggatatattcatgtaaaagtgaa 30958110  T
Q  230 ttgaa 234  Q
    |||||    
T  30958109 ttgaa 30958105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 234
Target Start/End: Complemental strand, 30974021 - 30973917
Alignment:
Q  131 aattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaa-atgatttatgtttggacacattcacgtagaagtgag 229  Q
    |||||||||| |||||||||||| |||||| | || ||| | |||| ||||||||||||||||  | ||||||||||||| | ||||| ||| ||||||     
T  30974021 aattgattttgaatgaattgattttgtaaaattgattttggctaaatgtgagttgaatgtaaagtttatttatgtttggatatattcatgtaaaagtgaa 30973922  T
Q  230 ttgaa 234  Q
    |||||    
T  30973921 ttgaa 30973917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 209
Target Start/End: Complemental strand, 7012716 - 7012678
Alignment:
Q  171 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  7012716 gttaaaagtgagttgaatgtaaagtgatttatgtttgga 7012678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 24916614 - 24916576
Alignment:
Q  173 taaaagtgagttgaatgtaaaatgatttatgtttggaca 211  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  24916614 taaaagtgagttgaatgtaaaatgatttatgtttagaca 24916576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 209
Target Start/End: Original strand, 31766160 - 31766238
Alignment:
Q  131 aattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    |||||||||| |||||||||||| |||||| |  | ||| | |||||||||||||||  |||| |||||||||||||||    
T  31766160 aattgattttgaatgaattgattttgtaaaattaattttggataaaagtgagttgaagttaaagtgatttatgtttgga 31766238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 10852738 - 10852775
Alignment:
Q  171 gttaaaagtgagttgaatgtaaaatgatttatgtttgg 208  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  10852738 gttaaaagtgagttgaatgtaaagtgatttatgtttgg 10852775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 23918918 - 23918881
Alignment:
Q  171 gttaaaagtgagttgaatgtaaaatgatttatgtttgg 208  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  23918918 gttaaaagtgagttgaatgtaaagtgatttatgtttgg 23918881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 50664834 - 50664777
Alignment:
Q  171 gttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtga 228  Q
    |||||||||||||||||||| || ||||||||||||||| |||  ||| |||||||||    
T  50664834 gttaaaagtgagttgaatgtgaattgatttatgtttggatacacacacttagaagtga 50664777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 1441362 - 1441417
Alignment:
Q  173 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtga 228  Q
    ||||||||||||||| ||||| |||||| ||||| || ||||||||||| ||||||    
T  1441362 taaaagtgagttgaacgtaaagtgatttgtgtttagatacattcacgtaaaagtga 1441417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 218
Target Start/End: Complemental strand, 25181326 - 25181239
Alignment:
Q  131 aattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcac 218  Q
    ||||||| || | |||||||||| |||| | | || |||  ||||||||||||| |||||||||| ||||||||||||| || |||||    
T  25181326 aattgatattgattgaattgattttgtagaattgattttgattaaaagtgagtttaatgtaaaattatttatgtttggataccttcac 25181239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 209
Target Start/End: Complemental strand, 32112167 - 32112088
Alignment:
Q  130 aaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    ||||||||||| | ||||||||||||||||| | || | | | ||||| ||||||||||| ||| | |||||||||||||    
T  32112167 aaattgattttgagtgaattgattatgtaaaattgattatggataaaaatgagttgaatgaaaagtaatttatgtttgga 32112088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 209
Target Start/End: Original strand, 40415312 - 40415359
Alignment:
Q  162 tcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    |||| ||||||||||||||||||| ||||||| | |||||||||||||    
T  40415312 tcgattttagttaaaagtgagttggatgtaaattaatttatgtttgga 40415359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 209
Target Start/End: Complemental strand, 44225682 - 44225603
Alignment:
Q  130 aaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    ||||||||||| |   |||||||| |||| | | || ||| |||||||||||||| |||||||| |||||||||||||||    
T  44225682 aaattgattttaatataattgattttgtagaattgattttcgttaaaagtgagtttaatgtaaagtgatttatgtttgga 44225603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 202
Target Start/End: Complemental strand, 49158700 - 49158621
Alignment:
Q  123 gtgacataaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttat 202  Q
    |||| ||||||||||||| |||||||||||| |||||| | || || || ||||||||| | |||| ||| |||||||||    
T  49158700 gtgatataaattgattttgaatgaattgattttgtaaaattgatttaagataaaagtgactagaatataagatgatttat 49158621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 231
Target Start/End: Complemental strand, 3776652 - 3776594
Alignment:
Q  173 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagtt 231  Q
    ||||| ||||||||||||||| ||||||||| ||||| ||||| | ||| |||||||||    
T  3776652 taaaattgagttgaatgtaaagtgatttatgcttggatacattgatgtaaaagtgagtt 3776594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 209
Target Start/End: Original strand, 7899143 - 7899185
Alignment:
Q  167 tttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    ||||||||||||  |||||||||||||| ||||||||||||||    
T  7899143 tttagttaaaagatagttgaatgtaaaacgatttatgtttgga 7899185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 209
Target Start/End: Original strand, 16246115 - 16246157
Alignment:
Q  167 tttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    ||||||||||||||||||  ||||||| |||||||||||||||    
T  16246115 tttagttaaaagtgagttagatgtaaattgatttatgtttgga 16246157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 209
Target Start/End: Complemental strand, 23496393 - 23496355
Alignment:
Q  171 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    |||||||||||||||||||| || |||||||||||||||    
T  23496393 gttaaaagtgagttgaatgtgaattgatttatgtttgga 23496355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 209
Target Start/End: Original strand, 41115275 - 41115353
Alignment:
Q  131 aattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    |||||||| | |||||||||||| |||| | | || ||| | ||| | |||||||||||||||||| ||||||||||||    
T  41115275 aattgattatgaatgaattgattttgtataattgattttggctaacaatgagttgaatgtaaaatggtttatgtttgga 41115353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 209
Target Start/End: Original strand, 52931593 - 52931635
Alignment:
Q  167 tttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    |||||||||||||||||| | |||||| |||||||||||||||    
T  52931593 tttagttaaaagtgagtttagtgtaaattgatttatgtttgga 52931635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 209
Target Start/End: Complemental strand, 31084282 - 31084245
Alignment:
Q  172 ttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    ||||||||||||||||||| || |||||||||||||||    
T  31084282 ttaaaagtgagttgaatgtgaattgatttatgtttgga 31084245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 34561184 - 34561131
Alignment:
Q  171 gttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaa 224  Q
    |||||||||||||||||||  || ||||||||||||||| ||||| || |||||    
T  34561184 gttaaaagtgagttgaatgcgaattgatttatgtttggatacattgacttagaa 34561131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 41591308 - 41591361
Alignment:
Q  173 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagt 226  Q
    ||||| |||||||||| |||| ||||||||||||||| ||||||| ||| ||||    
T  41591308 taaaaatgagttgaatttaaagtgatttatgtttggatacattcatgtaaaagt 41591361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 217
Target Start/End: Original strand, 49526695 - 49526740
Alignment:
Q  172 ttaaaagtgagttgaatgtaaaatgatttatgtttggacacattca 217  Q
    |||||||||| |||| |||||| ||||||||||||||| |||||||    
T  49526695 ttaaaagtgaattgattgtaaattgatttatgtttggatacattca 49526740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 4e-25; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 477 - 708
Target Start/End: Original strand, 34622376 - 34622607
Alignment:
Q  477 tattggcaaaggtctggaggtagagaccacatatttcctatgacacatcccaatgcatttaggttcttgcgagatcagctgaacgagtctattcaggttg 576  Q
    |||||||| ||||||  ||| ||||||||  |||||||||||||||| |||||||| ||||| ||| | ||  ||||  |||| ||  ||||||| ||||    
T  34622376 tattggcagaggtctaaaggcagagaccatgtatttcctatgacacaccccaatgcctttagattcctacgtaatcaattgaatgatactattcaagttg 34622475  T
Q  577 ttgttgattttggccgttaccccaaaggtgtatctaatttgaacaaggatgtagtgtccccatatgtacatttcgtagattcttatgtagatgatgagcc 676  Q
    |||| ||||||||||| ||||| || ||  | ||||||||||| || ||||| |||||||| ||||| ||| | || |||||||||  ||||||||| ||    
T  34622476 ttgtggattttggccgctaccctaagggcatgtctaatttgaataaagatgtggtgtccccgtatgttcatgttgtggattcttatacagatgatgaacc 34622575  T
Q  677 tcatgatccgtttgagtctcgcaccacactgc 708  Q
    ||| |||||||  |||  |||| |||||||||    
T  34622576 tcaagatccgtacgagattcgctccacactgc 34622607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 234
Target Start/End: Original strand, 2764419 - 2764485
Alignment:
Q  168 ttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 234  Q
    |||||||||||| |||||||| |||| |||||||| |||||| ||||||||||| ||||||||||||    
T  2764419 ttagttaaaagtaagttgaatataaagtgatttatatttggatacattcacgtaaaagtgagttgaa 2764485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 15206778 - 15206723
Alignment:
Q  173 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtga 228  Q
    |||||||||||||||||| || ||||||||||||||| ||||| || |||||||||    
T  15206778 taaaagtgagttgaatgtgaattgatttatgtttggatacattgacttagaagtga 15206723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 209
Target Start/End: Complemental strand, 19649270 - 19649232
Alignment:
Q  171 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  19649270 gttaaaagtgagttgaatgtaaagtgatttatgtttgga 19649232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 226
Target Start/End: Original strand, 32994153 - 32994250
Alignment:
Q  131 aattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaa--tgatttatgtttggacacattcacgtagaagt 226  Q
    |||||||||| |||||| |||||||||||| | || | | | | ||||||||||||| ||||||  |||||||||||||||| |||||| ||| ||||    
T  32994153 aattgattttgaatgaactgattatgtaaaattgattctggctgaaagtgagttgaaggtaaaatttgatttatgtttggactcattcatgtaaaagt 32994250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 16972019 - 16972080
Alignment:
Q  173 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 234  Q
    ||||||||||||||| |||||||||||| |||||| | ||||||| ||| |||||| |||||    
T  16972019 taaaagtgagttgaaggtaaaatgatttgtgtttgaatacattcatgtaaaagtgatttgaa 16972080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 32767519 - 32767475
Alignment:
Q  173 taaaagtgagttgaatgtaaaatgatttatgtttggacacattca 217  Q
    ||||||||||||| ||||||| ||||||||||||||| |||||||    
T  32767519 taaaagtgagttggatgtaaattgatttatgtttggatacattca 32767475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 206
Target Start/End: Original strand, 10552934 - 10552969
Alignment:
Q  171 gttaaaagtgagttgaatgtaaaatgatttatgttt 206  Q
    ||||||||||||||||||||||| ||||||||||||    
T  10552934 gttaaaagtgagttgaatgtaaattgatttatgttt 10552969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 234
Target Start/End: Complemental strand, 18123398 - 18123295
Alignment:
Q  131 aattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagt 230  Q
    |||||||||  | ||||||||| ||||||| |||||| ||  ||||||||| ||||| |||||||||||| |||| | | | ||| | ||| ||||||||    
T  18123398 aattgatttagagtgaattgatgatgtaaaatcgactctaactaaaagtgaattgaaggtaaaatgatttgtgttggaatatatttatgtaaaagtgagt 18123299  T
Q  231 tgaa 234  Q
    ||||    
T  18123298 tgaa 18123295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 209
Target Start/End: Complemental strand, 29970927 - 29970848
Alignment:
Q  130 aaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    ||||||||||| |  ||||||| | |||| | | || |||||||||||||||||||| | |||| |||||||||||||||    
T  29970927 aaattgattttgatagaattgaatttgtataattgattttagttaaaagtgagttgagtttaaagtgatttatgtttgga 29970848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 234
Target Start/End: Complemental strand, 32928064 - 32927961
Alignment:
Q  131 aattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagt 230  Q
    |||||||||| |  |||||||||||||||| | || | |   ||||| ||||||||| | ||| |||||| |||||||| ||||||| ||| ||||||||    
T  32928064 aattgattttgagggaattgattatgtaaaattgattcttactaaaattgagttgaaggcaaagtgatttgtgtttggatacattcatgtaaaagtgagt 32927965  T
Q  231 tgaa 234  Q
    ||||    
T  32927964 tgaa 32927961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 234
Target Start/End: Original strand, 43492206 - 43492253
Alignment:
Q  187 atgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 234  Q
    ||||||||||||||||||||||| ||||||| ||| |||| |||||||    
T  43492206 atgtaaaatgatttatgtttggatacattcatgtaaaagtaagttgaa 43492253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 209
Target Start/End: Original strand, 22936818 - 22936856
Alignment:
Q  171 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    |||||||||||||||||||| || |||||||||||||||    
T  22936818 gttaaaagtgagttgaatgtgaattgatttatgtttgga 22936856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 209
Target Start/End: Original strand, 31246340 - 31246378
Alignment:
Q  171 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    |||||||||||||||||||| || |||||||||||||||    
T  31246340 gttaaaagtgagttgaatgtgaattgatttatgtttgga 31246378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 218
Target Start/End: Complemental strand, 33588803 - 33588757
Alignment:
Q  172 ttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcac 218  Q
    ||||||||||||| |||||||||| ||||||||||||| || |||||    
T  33588803 ttaaaagtgagtttaatgtaaaattatttatgtttggataccttcac 33588757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 208
Target Start/End: Original strand, 38715193 - 38715271
Alignment:
Q  130 aaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttgg 208  Q
    ||||||||||| | |||||||||| || | | | || ||||||||||| |||||| | |||||| ||||||||||||||    
T  38715193 aaattgattttaattgaattgattttgcagaattgattttagttaaaattgagttaagtgtaaagtgatttatgtttgg 38715271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 209
Target Start/End: Complemental strand, 43550975 - 43550937
Alignment:
Q  171 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    |||||||||||||||||||| || |||||||||||||||    
T  43550975 gttaaaagtgagttgaatgtgaattgatttatgtttgga 43550937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 36447703 - 36447764
Alignment:
Q  173 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 234  Q
    |||||||||||||||| ||||||||||| ||||| || ||||| | ||| || |||||||||    
T  36447703 taaaagtgagttgaatataaaatgatttgtgtttagatacatttatgtataactgagttgaa 36447764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 209
Target Start/End: Complemental strand, 36779474 - 36779437
Alignment:
Q  172 ttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    |||||||||||||||||||||| | |||||||||||||    
T  36779474 ttaaaagtgagttgaatgtaaagtaatttatgtttgga 36779437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 209
Target Start/End: Complemental strand, 38516409 - 38516344
Alignment:
Q  144 tgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    |||||||||| |||| | | || ||| | ||| ||||||||||||||||| |||||||||||||||    
T  38516409 tgaattgattttgtagaattgattttcgataatagtgagttgaatgtaaagtgatttatgtttgga 38516344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 38875211 - 38875252
Alignment:
Q  174 aaaagtgagttgaatgtaaaatgatttatgtttggacacatt 215  Q
    ||||||||||| |||||||| ||||||||||||||| |||||    
T  38875211 aaaagtgagttcaatgtaaagtgatttatgtttggatacatt 38875252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 131 - 231
Target Start/End: Complemental strand, 40491750 - 40491650
Alignment:
Q  131 aattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagt 230  Q
    |||||||||| | |||||||||| |||||| | || |||   ||||||||||||||| ||||| |||||||| |||||| ||||||| ||| ||||||||    
T  40491750 aattgattttgagtgaattgattctgtaaaattgattttgactaaaagtgagttgaaggtaaagtgatttatttttggatacattcatgtaaaagtgagt 40491651  T
Q  231 t 231  Q
    |    
T  40491650 t 40491650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 217
Target Start/End: Original strand, 15311189 - 15311274
Alignment:
Q  132 attgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattca 217  Q
    ||||||||| ||  |||||||| |||||| | || | | ||||||||||||||||||||| | ||||||||||||||| |||||||    
T  15311189 attgattttgaactaattgattgtgtaaaattgaatatggttaaaagtgagttgaatgtatagtgatttatgtttggatacattca 15311274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 40561709 - 40561774
Alignment:
Q  169 tagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 234  Q
    |||| |||| ||||||||| ||||| ||||||||||||||| ||||||| ||| ||||||||||||    
T  40561709 tagtaaaaattgagttgaaagtaaagtgatttatgtttggatacattcatgtaaaagtgagttgaa 40561774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 26975305 - 26975345
Alignment:
Q  167 tttagttaaaagtgagttgaatgtaaaatgatttatgtttg 207  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  26975305 tttagttataagtgagttgaatgtaaaatgatttatgtttg 26975345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 45557495 - 45557435
Alignment:
Q  173 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttga 233  Q
    ||||||||||||||| ||||| |||||| |||||||| ||||||| ||| |||||||||||    
T  45557495 taaaagtgagttgaaggtaaagtgatttgtgtttggatacattcatgtaaaagtgagttga 45557435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 18350120 - 18350174
Alignment:
Q  174 aaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtga 228  Q
    |||||||||||||||||||||||||||||||||  | ||||||||| | ||||||    
T  18350120 aaaagtgagttgaatgtaaaatgatttatgtttacatacattcacgaaaaagtga 18350174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 205
Target Start/End: Original strand, 42481803 - 42481877
Alignment:
Q  131 aattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtt 205  Q
    |||||||||| | ||||||||||||||||| | || | |    ||||||||||||||||||||||||||||||||    
T  42481803 aattgattttaagtgaattgattatgtaaaattgattctgaaaaaaagtgagttgaatgtaaaatgatttatgtt 42481877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 29829324 - 29829368
Alignment:
Q  173 taaaagtgagttgaatgtaaaatgatttatgtttggacacattca 217  Q
    ||||| ||||||||||||||| ||||||||||||||| |||||||    
T  29829324 taaaaatgagttgaatgtaaagtgatttatgtttggatacattca 29829368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 38230165 - 38230121
Alignment:
Q  171 gttaaaagtgagttgaatgtaaaatgatttatgtttggacacatt 215  Q
    |||||||||||||||||||| || ||||||||||||||| |||||    
T  38230165 gttaaaagtgagttgaatgtgaattgatttatgtttggatacatt 38230121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 209
Target Start/End: Original strand, 42752203 - 42752241
Alignment:
Q  171 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    |||||||||||||||||||| || |||||||||||||||    
T  42752203 gttaaaagtgagttgaatgtgaattgatttatgtttgga 42752241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 209
Target Start/End: Complemental strand, 48459807 - 48459769
Alignment:
Q  171 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    |||||||||||||||||||| || |||||||||||||||    
T  48459807 gttaaaagtgagttgaatgtgaattgatttatgtttgga 48459769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 209
Target Start/End: Complemental strand, 4228643 - 4228606
Alignment:
Q  172 ttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  4228643 ttaaaagtgagttgaatgaaaagtgatttatgtttgga 4228606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 10371970 - 10372007
Alignment:
Q  171 gttaaaagtgagttgaatgtaaaatgatttatgtttgg 208  Q
    |||||||||||||||||||| || ||||||||||||||    
T  10371970 gttaaaagtgagttgaatgtgaattgatttatgtttgg 10372007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 12306853 - 12306792
Alignment:
Q  173 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 234  Q
    |||||||||||||||  |||| ||||||||||||||  | ||||| ||| ||||||||||||    
T  12306853 taaaagtgagttgaagataaagtgatttatgtttggctagattcatgtaaaagtgagttgaa 12306792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 20088966 - 20088929
Alignment:
Q  171 gttaaaagtgagttgaatgtaaaatgatttatgtttgg 208  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  20088966 gttaaaagtgagttgaacgtaaagtgatttatgtttgg 20088929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 22310415 - 22310476
Alignment:
Q  174 aaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaaa 235  Q
    |||| |||||||||  ||||| |||||||||||||| |||||| |||| |||||| ||||||    
T  22310415 aaaattgagttgaagataaaaagatttatgtttggatacattctcgtaaaagtgaattgaaa 22310476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 27571992 - 27571931
Alignment:
Q  173 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 234  Q
    |||||||||||| || ||||||||||||||| ||||| ||||| | ||| | ||||||||||    
T  27571992 taaaagtgagttaaaggtaaaatgatttatggttggatacatttatgtaaatgtgagttgaa 27571931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 252 - 320
Target Start/End: Complemental strand, 45369176 - 45369107
Alignment:
Q  252 tcaagttataatcaattcccgaggcaaaatcaattttactgga-aacatccaaacatgtcaaaataaaat 320  Q
    |||||||| |||||||||  || |||||||||||| |||| || ||||||||||||| ||||||| ||||    
T  45369176 tcaagttaaaatcaattctagaagcaaaatcaattctacttgagaacatccaaacatctcaaaatcaaat 45369107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 15220817 - 15220877
Alignment:
Q  174 aaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 234  Q
    |||||||||||||||||||| ||||||||||||||| ||||||| ||  ||||||||||||    
T  15220817 aaaagtgagttgaatgtaaagtgatttatgtttggatacattcatgttaaagtgagttgaa 15220877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 3853984 - 3853939
Alignment:
Q  172 ttaaaagtgagttgaatgtaaaatgatttatgtttggacacattca 217  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||    
T  3853984 ttaaaagtgagttgaatgtaaattgatttatgtttggatacattca 3853939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 16518908 - 16518847
Alignment:
Q  173 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 234  Q
    ||||||||||||||  |||||||||||| |||||||| ||||||| ||| ||||||||||||    
T  16518908 taaaagtgagttgagggtaaaatgatttgtgtttggatacattcatgtaaaagtgagttgaa 16518847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 209
Target Start/End: Complemental strand, 12111000 - 12110921
Alignment:
Q  130 aaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    ||||||||||| |  ||||||||| ||| || | || ||| |||||||||||||||||| |||| |||||||||||||||    
T  12111000 aaattgattttgatagaattgattttgtcaaattgattttggttaaaagtgagttgaatataaagtgatttatgtttgga 12110921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 209
Target Start/End: Original strand, 11005710 - 11005752
Alignment:
Q  167 tttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    ||||||||| ||||| |||||||||||||||||||||||||||    
T  11005710 tttagttaatagtgacttgaatgtaaaatgatttatgtttgga 11005752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 209
Target Start/End: Original strand, 23359953 - 23359991
Alignment:
Q  171 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  23359953 gttaaaagtgagttgaatgtaaagtgatttatgtttgga 23359991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 3716571 - 3716627
Alignment:
Q  144 tgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgattt 200  Q
    |||||||||||| ||||||  | ||||||||||| ||||||||| ||||||||||||    
T  3716571 tgaattgattatctaaagtttattttagttaaaaatgagttgaaggtaaaatgattt 3716627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 209
Target Start/End: Complemental strand, 10918686 - 10918650
Alignment:
Q  173 taaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    ||||||||||||||||||||| |||||||||||||||    
T  10918686 taaaagtgagttgaatgtaaagtgatttatgtttgga 10918650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 234
Target Start/End: Complemental strand, 32307220 - 32307153
Alignment:
Q  167 tttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 234  Q
    ||||||||||| ||||| ||||||||||||  |||| |||||| | |||||| || ||||||||||||    
T  32307220 tttagttaaaattgagtcgaatgtaaaatggcttatatttggataaattcacataaaagtgagttgaa 32307153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 40704753 - 40704682
Alignment:
Q  130 aaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgattta 201  Q
    ||||||||||| |||||||||||||||| || | || ||| ||||||| | | ||||||||||| |||||||    
T  40704753 aaattgattttgaatgaattgattatgtgaaattgattttggttaaaatttatttgaatgtaaattgattta 40704682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 209
Target Start/End: Original strand, 1945062 - 1945100
Alignment:
Q  171 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    |||||||||||||||||||| || |||||||||||||||    
T  1945062 gttaaaagtgagttgaatgtgaattgatttatgtttgga 1945100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 209
Target Start/End: Complemental strand, 23377589 - 23377551
Alignment:
Q  171 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  23377589 gttaaaagtgagttgaatgtaagttgatttatgtttgga 23377551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 209
Target Start/End: Complemental strand, 31224769 - 31224727
Alignment:
Q  167 tttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    ||||||||||||||||||| |||| || |||||||||||||||    
T  31224769 tttagttaaaagtgagttggatgtgaattgatttatgtttgga 31224727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 10618862 - 10618939
Alignment:
Q  130 aaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttg 207  Q
    ||||||||||||| |||||||||| |||||| | || | ||| ||||| ||| ||||| ||||| ||| |||||||||    
T  10618862 aaattgatttttagtgaattgattttgtaaaattgattctagctaaaaatgaattgaaggtaaagtgaattatgtttg 10618939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 30007576 - 30007613
Alignment:
Q  171 gttaaaagtgagttgaatgtaaaatgatttatgtttgg 208  Q
    |||||||||||||||||||| || ||||||||||||||    
T  30007576 gttaaaagtgagttgaatgtgaattgatttatgtttgg 30007613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 209
Target Start/End: Original strand, 34433330 - 34433367
Alignment:
Q  172 ttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    ||||||||||||||||||| || |||||||||||||||    
T  34433330 ttaaaagtgagttgaatgtgaattgatttatgtttgga 34433367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 209
Target Start/End: Original strand, 42089552 - 42089589
Alignment:
Q  172 ttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    ||||||||||||||||||| || |||||||||||||||    
T  42089552 ttaaaagtgagttgaatgtgaattgatttatgtttgga 42089589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 167 - 234
Target Start/End: Complemental strand, 22684000 - 22683933
Alignment:
Q  167 tttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 234  Q
    |||| |||||||||||||||| |||||||| |||||||||||||||||| | ||| ||| ||||||||    
T  22684000 tttacttaaaagtgagttgaaagtaaaatggtttatgtttggacacatttatgtaaaagcgagttgaa 22683933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 218
Target Start/End: Original strand, 39000531 - 39000619
Alignment:
Q  130 aaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcac 218  Q
    ||||||||||| | |||||||||| |||| | | || |||||||||||||||| | |||  ||||||||||||||||||| || |||||    
T  39000531 aaattgattttgattgaattgattttgtagaattgagtttagttaaaagtgagcttaataaaaaatgatttatgtttggataccttcac 39000619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 209
Target Start/End: Original strand, 38740287 - 38740365
Alignment:
Q  131 aattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    |||||||||| |||||||||||| |||||| | || ||| | |||||||||||||||  | || |||||||||||||||    
T  38740287 aattgattttgaatgaattgattttgtaaaattgattttggataaaagtgagttgaagttgaagtgatttatgtttgga 38740365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 228
Target Start/End: Complemental strand, 43868309 - 43868211
Alignment:
Q  130 aaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtga 228  Q
    ||||||||||| |||||||||||| |||||| |  | | ||||||||||| ||||||| ||||| |||||| | |||||| ||||| | ||| ||||||    
T  43868309 aaattgattttgaatgaattgattttgtaaaattaattctagttaaaagtaagttgaaagtaaagtgatttgtctttggatacatttatgtaaaagtga 43868211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 33843841 - 33843780
Alignment:
Q  173 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 234  Q
    ||||||||||||| ||||||| ||||||||||||||| | ||||| |||  |||||||||||    
T  33843841 taaaagtgagttggatgtaaagtgatttatgtttggatatattcatgtaatagtgagttgaa 33843780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 209
Target Start/End: Complemental strand, 36150664 - 36150627
Alignment:
Q  172 ttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    |||||||||||||||||||||| |||||||||||||||    
T  36150664 ttaaaagtgagttgaatgtaaagtgatttatgtttgga 36150627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 207
Target Start/End: Complemental strand, 48575557 - 48575480
Alignment:
Q  130 aaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttg 207  Q
    ||||| ||||| |||||||||||| |||||| | || ||| | ||||| |||||||||||||||||| ||||| ||||    
T  48575557 aaattaattttgaatgaattgattttgtaaaattgatttttgataaaaatgagttgaatgtaaaatggtttatttttg 48575480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 54487248 - 54487289
Alignment:
Q  174 aaaagtgagttgaatgtaaaatgatttatgtttggacacatt 215  Q
    |||||||||||||||||||| ||||||||||||||| |||||    
T  54487248 aaaagtgagttgaatgtaaattgatttatgtttggatacatt 54487289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 25927436 - 25927376
Alignment:
Q  173 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttga 233  Q
    ||||||||||||||| |||||||| ||||| ||| || ||||||||||| |||||| ||||    
T  25927436 taaaagtgagttgaaagtaaaatgttttatatttcgatacattcacgtaaaagtgaattga 25927376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 252 - 314
Target Start/End: Complemental strand, 2171801 - 2171738
Alignment:
Q  252 tcaagttataatcaattcccgaggcaaaatcaattttactgga-aacatccaaacatgtcaaaa 314  Q
    |||||||  |||||||||| | |||||| ||||||||||| || ||||||||||||||||||||    
T  2171801 tcaagttcgaatcaattccgggggcaaagtcaattttactcgagaacatccaaacatgtcaaaa 2171738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 17898085 - 17898144
Alignment:
Q  175 aaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 234  Q
    ||||||||||||||||||| ||||||||||||||| | ||| | ||| |||||| |||||    
T  17898085 aaagtgagttgaatgtaaagtgatttatgtttggatatatttaggtaaaagtgaattgaa 17898144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 234
Target Start/End: Complemental strand, 25319184 - 25319117
Alignment:
Q  167 tttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 234  Q
    |||| |||||||| ||||||||||||| |  ||||||||| || ||||| ||||| ||||||||||||    
T  25319184 tttacttaaaagtaagttgaatgtaaagttttttatgtttcgatacatttacgtaaaagtgagttgaa 25319117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 206
Target Start/End: Complemental strand, 46382908 - 46382869
Alignment:
Q  167 tttagttaaaagtgagttgaatgtaaaatgatttatgttt 206  Q
    ||||| ||||||| ||||||||||||||||||||||||||    
T  46382908 tttagataaaagtaagttgaatgtaaaatgatttatgttt 46382869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 209
Target Start/End: Complemental strand, 16566366 - 16566328
Alignment:
Q  171 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    |||||||||||||||||||| || |||||||||||||||    
T  16566366 gttaaaagtgagttgaatgtgaattgatttatgtttgga 16566328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 209
Target Start/End: Complemental strand, 22699803 - 22699765
Alignment:
Q  171 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    ||||||||| ||||||||||||| |||||||||||||||    
T  22699803 gttaaaagtaagttgaatgtaaagtgatttatgtttgga 22699765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 209
Target Start/End: Original strand, 22980727 - 22980765
Alignment:
Q  171 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    ||||||||| ||||||||||||| |||||||||||||||    
T  22980727 gttaaaagtaagttgaatgtaaagtgatttatgtttgga 22980765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 209
Target Start/End: Original strand, 22994314 - 22994352
Alignment:
Q  171 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    ||||||||| ||||||||||||| |||||||||||||||    
T  22994314 gttaaaagtaagttgaatgtaaagtgatttatgtttgga 22994352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 209
Target Start/End: Complemental strand, 41866219 - 41866177
Alignment:
Q  167 tttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    ||||||||||||||||||| |||| || |||||||||||||||    
T  41866219 tttagttaaaagtgagttggatgtgaattgatttatgtttgga 41866177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 209
Target Start/End: Original strand, 52062999 - 52063041
Alignment:
Q  167 tttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    |||||||||||||||||| || |||||||||||| ||||||||    
T  52062999 tttagttaaaagtgagtttaaggtaaaatgatttctgtttgga 52063041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 209
Target Start/End: Original strand, 14597650 - 14597687
Alignment:
Q  172 ttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  14597650 ttaaaagtgagttgaatgaaaagtgatttatgtttgga 14597687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 28947774 - 28947811
Alignment:
Q  171 gttaaaagtgagttgaatgtaaaatgatttatgtttgg 208  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  28947774 gttaaaagtgagttgaacgtaaagtgatttatgtttgg 28947811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 231
Target Start/End: Complemental strand, 882820 - 882758
Alignment:
Q  169 tagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagtt 231  Q
    ||||||||| ||||||||| ||||||||||||||||||||| ||||||| | | |||||||||    
T  882820 tagttaaaattgagttgaaggtaaaatgatttatgtttggatacattcatgcaaaagtgagtt 882758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 230
Target Start/End: Complemental strand, 1500079 - 1499973
Alignment:
Q  124 tgacataaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtaga 223  Q
    ||||| ||||||||||| | |||||||||| |||||| | || ||| | |||||| ||||||| |||||| ||||||||||||| | ||||| | ||| |    
T  1500079 tgacaaaaattgattttgactgaattgattttgtaaaattgattttggctaaaagcgagttgagtgtaaattgatttatgtttgaatacatttatgtaaa 1499980  T
Q  224 agtgagt 230  Q
    |||||||    
T  1499979 agtgagt 1499973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 206
Target Start/End: Complemental strand, 25208762 - 25208723
Alignment:
Q  167 tttagttaaaagtgagttgaatgtaaaatgatttatgttt 206  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  25208762 tttaattaaaagtgagttgaatgtaaaatgatttatgttt 25208723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 239
Target Start/End: Complemental strand, 3525098 - 3524989
Alignment:
Q  130 aaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgag 229  Q
    ||||| ||||| ||||||||||||||||||| | || | | | ||||||||||||||||| ||| || ||||| |||| | ||||| | ||| |||| ||    
T  3525098 aaattaattttgaatgaattgattatgtaaaattgattgtggctaaaagtgagttgaatgcaaactggtttatatttgaatacatttatgtaaaagtcag 3524999  T
Q  230 ttgaaagata 239  Q
    ||||| ||||    
T  3524998 ttgaacgata 3524989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 235
Target Start/End: Complemental strand, 8856479 - 8856375
Alignment:
Q  131 aattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagt 230  Q
    |||||||||| ||  ||||||| |||| || | || |||  ||||||||  |||||| |||||||||||| |||||||| ||||||| ||  ||||||||    
T  8856479 aattgattttgaaaaaattgatcatgtcaaattgaattttattaaaagttggttgaaggtaaaatgatttgtgtttggatacattcatgtgaaagtgagt 8856380  T
Q  231 tgaaa 235  Q
    |||||    
T  8856379 tgaaa 8856375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 9043722 - 9043774
Alignment:
Q  136 atttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaat 188  Q
    |||||||||||||||||| |||| | | || ||||||||||||||||||||||    
T  9043722 atttttaatgaattgattttgtataattgattttagttaaaagtgagttgaat 9043774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 20846463 - 20846423
Alignment:
Q  167 tttagttaaaagtgagttgaatgtaaaatgatttatgtttg 207  Q
    ||||||||||| ||||| |||||||||||||||||||||||    
T  20846463 tttagttaaaaatgagtagaatgtaaaatgatttatgtttg 20846423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 235
Target Start/End: Complemental strand, 34621010 - 34620954
Alignment:
Q  179 tgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaaa 235  Q
    ||||||||| ||||| ||||||||||||||| ||||| | ||| |||||||||||||    
T  34621010 tgagttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgagttgaaa 34620954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 235
Target Start/End: Complemental strand, 34748447 - 34748391
Alignment:
Q  179 tgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaaa 235  Q
    ||||||||| ||||| ||||||||||||||| ||||| | ||| |||||||||||||    
T  34748447 tgagttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgagttgaaa 34748391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 434192 - 434254
Alignment:
Q  173 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaaa 235  Q
    ||||||||||||| | |||||||||||| |||||||| | ||||  ||| |||||||||||||    
T  434192 taaaagtgagttgcaggtaaaatgatttgtgtttggatatattcgtgtaaaagtgagttgaaa 434254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 209
Target Start/End: Original strand, 16442371 - 16442413
Alignment:
Q  167 tttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    |||||||| ||||||||||||||| || |||||||||||||||    
T  16442371 tttagttacaagtgagttgaatgtgaattgatttatgtttgga 16442413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 209
Target Start/End: Complemental strand, 16548215 - 16548177
Alignment:
Q  171 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    |||||||||||||||||||| || |||||||||||||||    
T  16548215 gttaaaagtgagttgaatgtgaattgatttatgtttgga 16548177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 209
Target Start/End: Complemental strand, 7486561 - 7486524
Alignment:
Q  172 ttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    ||||||||||||| || |||||||||||||||||||||    
T  7486561 ttaaaagtgagtttaaggtaaaatgatttatgtttgga 7486524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 8551118 - 8551175
Alignment:
Q  172 ttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacg-tagaagtga 228  Q
    ||||||||||||||| || ||| |||||||||||||||||| || ||| |||||||||    
T  8551118 ttaaaagtgagttgagtgaaaagtgatttatgtttggacacctttacgatagaagtga 8551175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 209
Target Start/End: Complemental strand, 29759751 - 29759713
Alignment:
Q  171 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    |||||||||||||||||||||||||||||||||||||||    
T  29759751 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 29759713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 47307559 - 47307505
Alignment:
Q  142 aatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatg 196  Q
    |||||||||||| | |||| | |||||||||||||||||||||||||||||||||    
T  47307559 aatgaattgattttataaaattgactttagttaaaagtgagttgaatgtaaaatg 47307505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 208
Target Start/End: Complemental strand, 13344913 - 13344836
Alignment:
Q  131 aattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttgg 208  Q
    |||||||||| | |||||||||| |||| | | || ||| ||||||||||||||||| ||||| ||||||||||||||    
T  13344913 aattgattttgattgaattgattttgtagaattgattttggttaaaagtgagttgaacgtaaagtgatttatgtttgg 13344836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 34915196 - 34915135
Alignment:
Q  173 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 234  Q
    ||||||||||||| | ||||||||||||||||||| | ||||||| ||| ||||||||||||    
T  34915196 taaaagtgagttgcaggtaaaatgatttatgtttgaatacattcatgtaaaagtgagttgaa 34915135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 35961498 - 35961437
Alignment:
Q  173 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 234  Q
    ||||||||||||||| ||||||||||||||||||  | ||||||| ||| ||||||||||||    
T  35961498 taaaagtgagttgaaggtaaaatgatttatgtttctatacattcatgtaaaagtgagttgaa 35961437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 209
Target Start/End: Complemental strand, 4347100 - 4347036
Alignment:
Q  145 gaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    ||||||||| |||| | | || ||| ||||||||||||||||||||||| |||||||||||||||    
T  4347100 gaattgattttgtagaattgattttggttaaaagtgagttgaatgtaaagtgatttatgtttgga 4347036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 7301834 - 7301890
Alignment:
Q  172 ttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtga 228  Q
    |||||||||| |||||||||||||||||||| |||||  ||||||||||| ||||||    
T  7301834 ttaaaagtgatttgaatgtaaaatgatttatatttggtaacattcacgtaaaagtga 7301890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 7335901 - 7335941
Alignment:
Q  167 tttagttaaaagtgagttgaatgtaaaatgatttatgtttg 207  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  7335901 tttagttaaaagtgagttgaatgtaaagtgatttatgtttg 7335941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 234
Target Start/End: Complemental strand, 12655424 - 12655314
Alignment:
Q  123 gtgacataaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtag 222  Q
    |||||| |||| ||||||  ||||||||||||||| || | || |||| ||||||| |||||||||||| |||| | ||||||| || | ||||| |||     
T  12655424 gtgacaaaaatagattttagatgaattgattatgtgaaattgattttacttaaaagcgagttgaatgtagaatggtctatgtttagataaattcatgta- 12655326  T
Q  223 aagtgagttgaa 234  Q
    ||||||||||||    
T  12655325 aagtgagttgaa 12655314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 5268349 - 5268287
Alignment:
Q  173 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaaa 235  Q
    ||||||||||||||||||||| |||||| |||||| | | ||||| ||| |||||||||||||    
T  5268349 taaaagtgagttgaatgtaaagtgatttttgtttgaatatattcatgtaaaagtgagttgaaa 5268287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 44786871 - 44786928
Alignment:
Q  171 gttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtga 228  Q
    ||||||| ||||||||||||||||||||||||||| | | ||||||| ||| ||||||    
T  44786871 gttaaaaatgagttgaatgtaaaatgatttatgttcgaatacattcatgtaaaagtga 44786928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 209
Target Start/End: Original strand, 3887364 - 3887439
Alignment:
Q  133 ttgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    |||||||| ||||||||| || |||||| | || ||||| |||| ||||||| ||||||||||| ||||||||||||    
T  3887364 ttgattttgaatgaattggttttgtaaaat-gattttagataaaggtgagttcaatgtaaaatgttttatgtttgga 3887439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 32365183 - 32365143
Alignment:
Q  167 tttagttaaaagtgagttgaatgtaaaatgatttatgtttg 207  Q
    |||||| |||||||||||||||||||| |||||||||||||    
T  32365183 tttagtcaaaagtgagttgaatgtaaattgatttatgtttg 32365143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 213246 - 213297
Alignment:
Q  183 ttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 234  Q
    ||||||||||| ||||||||||||||| |||| || ||| ||||||||||||    
T  213246 ttgaatgtaaagtgatttatgtttggatacatgcatgtaaaagtgagttgaa 213297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 210
Target Start/End: Complemental strand, 40643069 - 40642990
Alignment:
Q  131 aattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttggac 210  Q
    |||||||||| | |||||||||| |||||| | || ||| | ||| ||  ||||||||||||| ||||||||||||||||    
T  40643069 aattgattttgagtgaattgattctgtaaaattgattttggataagagcaagttgaatgtaaagtgatttatgtttggac 40642990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 48548975 - 48549030
Alignment:
Q  179 tgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 234  Q
    ||||||||| |||||||||||||||||| || ||||| | ||| ||||||||||||    
T  48548975 tgagttgaaggtaaaatgatttatgttttgatacatttatgtaaaagtgagttgaa 48549030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 209
Target Start/End: Complemental strand, 1199927 - 1199889
Alignment:
Q  171 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    |||||||||||||||||||| || |||||||||||||||    
T  1199927 gttaaaagtgagttgaatgtgaattgatttatgtttgga 1199889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 209
Target Start/End: Original strand, 20800303 - 20800341
Alignment:
Q  171 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    |||||||||||||||||||| || |||||||||||||||    
T  20800303 gttaaaagtgagttgaatgtgaattgatttatgtttgga 20800341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 217
Target Start/End: Complemental strand, 33693134 - 33693088
Alignment:
Q  171 gttaaaagtgagttgaatgtaaaatgatttatgtttggacacattca 217  Q
    |||||||| |||||||| ||||| ||||||||||||||| |||||||    
T  33693134 gttaaaagcgagttgaacgtaaagtgatttatgtttggatacattca 33693088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 209
Target Start/End: Original strand, 35569228 - 35569266
Alignment:
Q  171 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    |||||||||||||||||||| || |||||||||||||||    
T  35569228 gttaaaagtgagttgaatgtgaattgatttatgtttgga 35569266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 209
Target Start/End: Complemental strand, 40352491 - 40352453
Alignment:
Q  171 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  40352491 gttaaaagtgagtttaatgtaaagtgatttatgtttgga 40352453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 209
Target Start/End: Complemental strand, 48511008 - 48510970
Alignment:
Q  171 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    |||||||||||||||||||| || |||||||||||||||    
T  48511008 gttaaaagtgagttgaatgtgaattgatttatgtttgga 48510970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 50751256 - 50751290
Alignment:
Q  173 taaaagtgagttgaatgtaaaatgatttatgtttg 207  Q
    |||||||||||| ||||||||||||||||||||||    
T  50751256 taaaagtgagttaaatgtaaaatgatttatgtttg 50751290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 7524243 - 7524182
Alignment:
Q  173 taaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 234  Q
    |||||||||| | || ||||| |||||| |||||||||||||| | ||| ||||||||||||    
T  7524243 taaaagtgagctcaaggtaaagtgatttgtgtttggacacatttatgtaaaagtgagttgaa 7524182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 205
Target Start/End: Original strand, 26253024 - 26253101
Alignment:
Q  128 ataaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtt 205  Q
    |||||||| |||| |||||||||||| |||||| |||| |    |||||| ||||||||| ||||||| |||||||||    
T  26253024 ataaattggttttgaatgaattgattctgtaaaatcgattcggtttaaaaatgagttgaaagtaaaatcatttatgtt 26253101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 209
Target Start/End: Original strand, 15241 - 15320
Alignment:
Q  130 aaattgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    ||||||||||| |  ||||||||| ||| || | || ||| |||||||||||||||||| |||| |||||||||||||||    
T  15241 aaattgattttgatagaattgattttgtcaaattgattttggttaaaagtgagttgaatataaagtgatttatgtttgga 15320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000008; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 134 - 217
Target Start/End: Complemental strand, 29923069 - 29922986
Alignment:
Q  134 tgatttttaatgaattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattca 217  Q
    ||||||| ||||||||||||||||||| | || |||   || ||||||||||||||| || | ||||||||||||| |||||||    
T  29923069 tgattttgaatgaattgattatgtaaaattgattttgactataagtgagttgaatgtgaagtaatttatgtttggatacattca 29922986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 209
Target Start/End: Original strand, 2483732 - 2483774
Alignment:
Q  167 tttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    |||||||||||||||||||||||| || |||||||||||||||    
T  2483732 tttagttaaaagtgagttgaatgtgaattgatttatgtttgga 2483774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 209
Target Start/End: Original strand, 2868371 - 2868413
Alignment:
Q  167 tttagttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    ||||||||||||||||||||||||||| ||||||| |||||||    
T  2868371 tttagttaaaagtgagttgaatgtaaagtgatttaagtttgga 2868413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 217
Target Start/End: Complemental strand, 4306636 - 4306598
Alignment:
Q  179 tgagttgaatgtaaaatgatttatgtttggacacattca 217  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  4306636 tgagttgaatgtaaaatgatttatgtttggatacattca 4306598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 209
Target Start/End: Complemental strand, 22811116 - 22811078
Alignment:
Q  171 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  22811116 gttaaaagtgagttgaatgtaaagtgatttatgtttgga 22811078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 24036660 - 24036627
Alignment:
Q  174 aaaagtgagttgaatgtaaaatgatttatgtttg 207  Q
    ||||||||||||||||||||||||||||||||||    
T  24036660 aaaagtgagttgaatgtaaaatgatttatgtttg 24036627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 206
Target Start/End: Original strand, 5465398 - 5465458
Alignment:
Q  146 aattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgttt 206  Q
    |||||||| |||||| | || ||||| ||||||||| ||||||| ||||||||||||||||    
T  5465398 aattgattttgtaaaattgattttagataaaagtgaattgaatgaaaaatgatttatgttt 5465458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 6988277 - 6988217
Alignment:
Q  146 aattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgttt 206  Q
    |||||||| |||||| | || |||| |||||||| |||||||| |||||||||||||||||    
T  6988277 aattgattttgtaaaattgattttaattaaaagtaagttgaatttaaaatgatttatgttt 6988217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 252 - 315
Target Start/End: Complemental strand, 10898736 - 10898672
Alignment:
Q  252 tcaagttataatcaattcccgaggcaaaatcaattttactgga-aacatccaaacatgtcaaaat 315  Q
    |||||||| |||||||||  |||||||||||||||||||| || | || ||||||||||||||||    
T  10898736 tcaagttagaatcaattctagaggcaaaatcaattttactcgagagcaaccaaacatgtcaaaat 10898672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 10957205 - 10957268
Alignment:
Q  167 tttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagtt 231  Q
    ||||||||||||||| |||||||| ||||||||||||||| |  ||||| ||||| |||||||||    
T  10957205 tttagttaaaagtgacttgaatgt-aaatgatttatgttttgttacatttacgtacaagtgagtt 10957268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 234
Target Start/End: Original strand, 28304821 - 28304888
Alignment:
Q  167 tttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaa 234  Q
    ||||||||||| |||||||||||  ||||||||||| |||||| | |||||||||  |||| ||||||    
T  28304821 tttagttaaaaatgagttgaatgggaaatgatttatatttggatatattcacgtaacagtgggttgaa 28304888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 209
Target Start/End: Complemental strand, 19784903 - 19784865
Alignment:
Q  171 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  19784903 gttaaaagtgagttgaatgtaaagtggtttatgtttgga 19784865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 209
Target Start/End: Complemental strand, 22482279 - 22482241
Alignment:
Q  171 gttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    |||||||||||||||||||| || |||||||||||||||    
T  22482279 gttaaaagtgagttgaatgtgaattgatttatgtttgga 22482241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 205
Target Start/End: Original strand, 35816985 - 35817019
Alignment:
Q  171 gttaaaagtgagttgaatgtaaaatgatttatgtt 205  Q
    ||||||||||||||||||||||||| |||||||||    
T  35816985 gttaaaagtgagttgaatgtaaaataatttatgtt 35817019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 255 - 324
Target Start/End: Complemental strand, 38045460 - 38045390
Alignment:
Q  255 agttataatcaattcccgaggcaaaatcaattttactgga-aacatccaaacatgtcaaaataaaatttgc 324  Q
    ||||| ||||||| || ||||||||||||||| |||| || ||||| ||||||||||||||| || |||||    
T  38045460 agttaaaatcaataccggaggcaaaatcaattctacttgagaacattcaaacatgtcaaaatcaattttgc 38045390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 235
Target Start/End: Original strand, 10273268 - 10273357
Alignment:
Q  146 aattgattatgtaaagtcgactttagttaaaagtgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaaa 235  Q
    |||||||| |||||| |  | |||| ||| ||||||||||||| |||||||||||||| ||| | |||||  |||| ||||| |||||||    
T  10273268 aattgattttgtaaaattaattttacttataagtgagttgaatataaaatgatttatgcttgaatacattttcgtacaagtgggttgaaa 10273357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 252 - 316
Target Start/End: Complemental strand, 29922640 - 29922575
Alignment:
Q  252 tcaagttataatcaattcccgaggcaaaatcaattttactgga-aacatccaaacatgtcaaaata 316  Q
    |||||||| |||||||||  ||||||||||||||| |||| || ||||  ||||||||||||||||    
T  29922640 tcaagttaaaatcaattcttgaggcaaaatcaattctactagagaacaatcaaacatgtcaaaata 29922575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 213
Target Start/End: Complemental strand, 40885300 - 40885259
Alignment:
Q  172 ttaaaagtgagttgaatgtaaaatgatttatgtttggacaca 213  Q
    |||||||||||||| |||| || |||||||||||||||||||    
T  40885300 ttaaaagtgagttggatgtgaattgatttatgtttggacaca 40885259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 209
Target Start/End: Original strand, 43152386 - 43152423
Alignment:
Q  172 ttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  43152386 ttaaaagtgagttgaatgaaaagtgatttatgtttgga 43152423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 252 - 317
Target Start/End: Original strand, 12378 - 12444
Alignment:
Q  252 tcaagttataatcaattcccgaggcaaaatcaattttactgga-aacatccaaacatgtcaaaataa 317  Q
    |||||||| ||||| |||  ||||||||||||||| |||| || |||||||||||||||||||||||    
T  12378 tcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaataa 12444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 14075 - 14131
Alignment:
Q  179 tgagttgaatgtaaaatgatttatgtttggacacattcacgtagaagtgagttgaaa 235  Q
    ||||||||| ||||| ||||||||||||||| ||||||| ||  |||||||||||||    
T  14075 tgagttgaaggtaaagtgatttatgtttggatacattcatgtgaaagtgagttgaaa 14131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 99742 - 99701
Alignment:
Q  167 tttagttaaaagtgagttgaatgtaaaatgatttatgtttgg 208  Q
    |||| |||||||||||||||||||||| | ||||||||||||    
T  99742 tttaattaaaagtgagttgaatgtaaattaatttatgtttgg 99701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 199394 - 199431
Alignment:
Q  171 gttaaaagtgagttgaatgtaaaatgatttatgtttgg 208  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  199394 gttaaaagtgagttgaacgtaaagtgatttatgtttgg 199431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 209
Target Start/End: Complemental strand, 219728 - 219691
Alignment:
Q  172 ttaaaagtgagttgaatgtaaaatgatttatgtttgga 209  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  219728 ttaaaagtgagttgaatgaaaagtgatttatgtttgga 219691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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