View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19675_low_42 (Length: 337)
Name: NF19675_low_42
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19675_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 13 - 318
Target Start/End: Complemental strand, 29468398 - 29468093
Alignment:
| Q |
13 |
aatatatgacaaattaacacatgcggatcatgtggtaggtttcaagtagaattttcgccatttgttcttacaatgattccagctcctgtaatgattccca |
112 |
Q |
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| T |
29468398 |
aatatatgacaaattaacacatggggatcatgtggtaggtttcaagtagaattttcgccatttgttcttacaatgattccagctcctgtaatgattccca |
29468299 |
T |
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| Q |
113 |
tgagaaaatttggaacaagtgcagctacaaccatcatgagactctcaatcactgagatgcatccgtagatgttaatagtgaaaaacgcatagtgaatgaa |
212 |
Q |
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| T |
29468298 |
tgagaaaatttggaacaagtgcagctacaaccatcatgagactctcaatcactgagatgcatccgtagatgttaatagtgaaaaacgcatagtgaatgaa |
29468199 |
T |
|
| Q |
213 |
tccgggtctgaatttcaccatgttatatgtgattgtgcaagaagtaagagcaatagcaaccaagaatgggaatgatgaaagaaagtttgataaaataaat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29468198 |
tccgggtctgaatttcaccatgttatatgtgattgtgcaagaagtaagagcaatagcaaccaagaatgggaatgatgaaagaaagtttgataaaataaat |
29468099 |
T |
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| Q |
313 |
gctgct |
318 |
Q |
| |
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|||||| |
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| T |
29468098 |
gctgct |
29468093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 318
Target Start/End: Complemental strand, 29435175 - 29434870
Alignment:
| Q |
16 |
atatgacaaattaacacatgcggatcatgtggtaggtttcaagtagaattttcg---ccatttgttcttacaatgattccagctcctgtaatgattccca |
112 |
Q |
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|||||| |||||||||| || |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
29435175 |
atatgaaaaattaacacgtgtggatcatgtggtaggtttcaagtagagttttcctatccatttgttcttacaatgattccagctcctgtaacgattccca |
29435076 |
T |
|
| Q |
113 |
tgagaaaatttggaacaagtgcagctacaaccatcatgagactctcaatcactgagatgcatccgtagatgttaatagtgaaaaacgcatagtgaatgaa |
212 |
Q |
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| T |
29435075 |
taaggaaatttggaacaagcgaagctacaaccatcatgatactctcgatcactgagaggcatccatagacgttaagagtgaaaaacacatagtgaatgaa |
29434976 |
T |
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| Q |
213 |
tccgggtctgaatttcaccatgttatatgtgattgtgcaagaagtaagagcaatagcaaccaagaatgggaatgatgaaagaaagtttgataaaataaat |
312 |
Q |
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||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||| ||||||| | |
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| T |
29434975 |
tcctggcctgaatttcaccatgttatatgtgattgtgcaagaagtaagagcaataacaaccaggaatgggaatgatgaaataaagtttgctaaaatatag |
29434876 |
T |
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| Q |
313 |
gctgct |
318 |
Q |
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|||||| |
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| T |
29434875 |
gctgct |
29434870 |
T |
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