View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19675_low_44 (Length: 317)
Name: NF19675_low_44
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19675_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 11 - 299
Target Start/End: Original strand, 36809707 - 36810013
Alignment:
| Q |
11 |
cacagattatgcattgaagcaaataatggaatcttttttagtaaaaaatttattgcaacagaaagtttcctgaccacaaaatcatatggctagaatcagt |
110 |
Q |
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| T |
36809707 |
cacagattatgcatttaagcaaataatggaatcttttttagtaaaaaatttattgcaacagaaagtttcctgaccacaaaatcatatggctagaatcagt |
36809806 |
T |
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| Q |
111 |
tttgatta---------------------ctttggtacagctttggaaacaccttaattgatgaaggcgatctggttggaaatgcgtggtagtactacta |
189 |
Q |
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|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
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| T |
36809807 |
tttgattagcaaggtgggatgagttattactttggtacaactttggaaacaccttaattgatgaaggcgatctggttggaaatgcgtggta---ctacca |
36809903 |
T |
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| Q |
190 |
ctatgtggatgagaaagaatgtaatattgactatctgctagggtattcttgcatccatctgtctactctcaaattctccatattaattccaataactaca |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36809904 |
ctatgtggatgagaaagaatgtaatattgactatctgctagggtattcttgcatccatctgtctactctcaaattctccatattaattccaataactaca |
36810003 |
T |
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| Q |
290 |
ctgacatgac |
299 |
Q |
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|||||||||| |
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| T |
36810004 |
ctgacatgac |
36810013 |
T |
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