View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19675_low_47 (Length: 307)
Name: NF19675_low_47
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19675_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 4 - 291
Target Start/End: Complemental strand, 4926369 - 4926081
Alignment:
| Q |
4 |
aaaattccacaaaattgattagtttgatttcaaacaacnnnnnnnccaaaagctaaatttattacacttaattcttccccataaaataatctaatgatta |
103 |
Q |
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| T |
4926369 |
aaaaatccacaaaattgattagtttgatttcaaacaactttttttccaaaagctaaatttattacacttaattcttccccataaaataatctaatgatta |
4926270 |
T |
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| Q |
104 |
ttcagttttcatttcagatgtatcgaagcaagaaacttgacgagttcggacaaggtaagaaccatccaaaaaatttaatacaatgtttaattgttatcaa |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4926269 |
ttcagttttcatttcagatgtatcgaagcaagaaacttgacgagttcggacaaggtaagaaccatccaaaaaaattaatacaatgtttaattgttatcaa |
4926170 |
T |
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| Q |
204 |
-nnnnnnnnatcaaaattgttatcaaaattttgcggaaggattgatgcttttgatattcagaaattgcacttgcttcttattaattgag |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4926169 |
tttttttttatcaaaattgttatcaaaattttgcggaaggattgatgcttttgatattcagaaattgcacttgcttcttattaattgag |
4926081 |
T |
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