View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19675_low_5 (Length: 861)

Name: NF19675_low_5
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19675_low_5
NF19675_low_5
[»] chr8 (13 HSPs)
chr8 (239-844)||(6074302-6074913)
chr8 (325-710)||(6196943-6197328)
chr8 (26-83)||(13884508-13884565)
chr8 (15-83)||(2554110-2554178)
chr8 (26-83)||(13884759-13884816)
chr8 (16-83)||(29714561-29714628)
chr8 (730-808)||(6196860-6196938)
chr8 (26-83)||(29714813-29714870)
chr8 (26-83)||(42126655-42126712)
chr8 (29-83)||(26746012-26746066)
chr8 (15-80)||(43416285-43416350)
chr8 (26-114)||(11867953-11868041)
chr8 (29-83)||(26745282-26745336)
[»] chr5 (2 HSPs)
chr5 (343-790)||(37450015-37450462)
chr5 (15-83)||(21249381-21249449)
[»] chr7 (12 HSPs)
chr7 (15-98)||(47373722-47373805)
chr7 (16-83)||(30862237-30862304)
chr7 (26-83)||(28715913-28715970)
chr7 (15-83)||(28715661-28715729)
chr7 (29-83)||(38408174-38408228)
chr7 (15-84)||(6474298-6474367)
chr7 (37-84)||(6474562-6474609)
chr7 (34-83)||(41985929-41985978)
chr7 (30-81)||(41986183-41986234)
chr7 (29-83)||(6271241-6271295)
chr7 (29-83)||(38407451-38407505)
chr7 (26-83)||(30862491-30862548)
[»] chr3 (9 HSPs)
chr3 (26-83)||(40364228-40364285)
chr3 (26-84)||(40244643-40244701)
chr3 (26-83)||(46003519-46003576)
chr3 (26-83)||(51663521-51663578)
chr3 (26-79)||(46003271-46003324)
chr3 (15-80)||(51663272-51663337)
chr3 (15-83)||(20537945-20538013)
chr3 (23-79)||(20538202-20538258)
chr3 (40-83)||(40244873-40244916)
[»] chr4 (10 HSPs)
chr4 (13-83)||(55173511-55173581)
chr4 (22-81)||(39161554-39161613)
chr4 (15-84)||(50509388-50509457)
chr4 (15-84)||(39161306-39161375)
chr4 (26-101)||(47096800-47096875)
chr4 (29-83)||(9738137-9738191)
chr4 (29-83)||(9738956-9739010)
chr4 (26-80)||(47097068-47097122)
chr4 (15-84)||(37996083-37996152)
chr4 (33-81)||(55173355-55173403)
[»] scaffold0781 (1 HSPs)
scaffold0781 (15-83)||(5295-5363)
[»] chr6 (10 HSPs)
chr6 (15-83)||(2216838-2216906)
chr6 (16-84)||(24690607-24690675)
chr6 (26-83)||(24798644-24798701)
chr6 (29-83)||(9955643-9955697)
chr6 (26-80)||(24690377-24690431)
chr6 (15-101)||(18494734-18494820)
chr6 (29-83)||(9954826-9954880)
chr6 (26-83)||(11644018-11644076)
chr6 (26-83)||(11643768-11643825)
chr6 (15-84)||(24798882-24798951)
[»] chr2 (15 HSPs)
chr2 (15-83)||(40987676-40987744)
chr2 (15-80)||(2916400-2916465)
chr2 (27-83)||(13559573-13559629)
chr2 (15-83)||(16973083-16973151)
chr2 (34-101)||(16973343-16973411)
chr2 (26-77)||(24126194-24126245)
chr2 (26-83)||(38982828-38982885)
chr2 (29-81)||(2916651-2916703)
chr2 (26-77)||(24125924-24125975)
chr2 (26-80)||(11533716-11533770)
chr2 (26-84)||(38982575-38982633)
chr2 (26-83)||(44594267-44594325)
chr2 (26-79)||(44594509-44594562)
chr2 (35-83)||(24125689-24125737)
chr2 (29-83)||(34826709-34826763)
[»] chr1 (10 HSPs)
chr1 (15-83)||(10824629-10824697)
chr1 (15-83)||(19056411-19056479)
chr1 (15-83)||(37189608-37189676)
chr1 (26-81)||(37189388-37189443)
chr1 (15-83)||(18844478-18844546)
chr1 (15-79)||(22683164-22683228)
chr1 (16-102)||(19056149-19056236)
chr1 (15-80)||(15825781-15825844)
chr1 (26-84)||(18844719-18844778)
chr1 (26-79)||(10824391-10824444)
[»] scaffold0060 (1 HSPs)
scaffold0060 (26-83)||(22976-23033)


Alignment Details
Target: chr8 (Bit Score: 549; Significance: 0; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 239 - 844
Target Start/End: Complemental strand, 6074913 - 6074302
Alignment:
Q  239 ccaactctaagcgggcagctgataaaagaaagtcatat------gtttgttttgttcatactcaatcataatttctaatcaaggtacgtataatgtctta 332  Q
    ||||||| ||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6074913 ccaactccaagcgggcagctgataaaagaaagtcatattcatatgtttgttttgttcatactcaatcataatttctaatcaaggtacgtaaaatgtctta 6074814  T
Q  333 ttccagcaagaagtacgatgtgtttgtcagctttagaggcgaggacactcggtatggcatcaccaaccttatttacgatgctctgattcataaatcaata 432  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6074813 ttccagcaagaaatacgatgtctttgtcagctttagaggcgaggacactcggtatggcatcaccaaccttatttacgatgctctgattcataaatcaata 6074714  T
Q  433 aaaacattcatagattacgagctcaatagaggagaagatgtttggccaaaacttgccgaagctattgaagagtcacacatctccgtcgttgttttctctg 532  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  6074713 aaaacattcatagattacgagctcaatagaggagaagatgtttggccaaaactttccaaagctattgaagagtcacacatctccgtcgttgttttctctg 6074614  T
Q  533 aaaattttgcaacctcaaaatggtgtttggaagaactggtgaaagtgctgaaatgcagaaaagaccatggtcaagttgttatacctgttttctataaaac 632  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6074613 aaaattttgcaacctcaaaatggtgtttggaagaactggtgaaagtgctggaatgcagaaaagaccatggtcaagttgttatacctgttttctataaaac 6074514  T
Q  633 aaatccgtctcacataaaaaatcagactcacagttatgagaaagcatttgcaaaacacgagagagatcttgggaccaaaagtaatgcatccaataaactt 732  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6074513 aaatccgtctcacataagaaatcagactcatagttatgagaaagcatttgcaaaacacgagagagatcttgggaccaaaagtaatgcatccaataaactt 6074414  T
Q  733 atagtgcttaagtggagatctgcccttgctgaagcagccactatatctggatgggacactcatactcacaagtaagtaaccagttttagatgaatttttt 832  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6074413 atagtgcttaagtggagatctgcccttactgaagcagccactatatctggatgggacactcatactcacaagtaagtaaccagttttagatgaatttttt 6074314  T
Q  833 aagatattcaat 844  Q
    ||||||||||||    
T  6074313 aagatattcaat 6074302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 170; E-Value: 9e-91
Query Start/End: Original strand, 325 - 710
Target Start/End: Complemental strand, 6197328 - 6196943
Alignment:
Q  325 atgtcttattccagcaagaagtacgatgtgtttgtcagctttagaggcgaggacactcggtatggcatcaccaaccttatttacgatgctctgattcata 424  Q
    ||||| ||||| ||||||||| ||||||||||| | ||||||||||||||||||||||| || || ||||| | || | || ||| ||||||||||||||    
T  6197328 atgtcatattctagcaagaagcacgatgtgtttcttagctttagaggcgaggacactcgctacggtatcactagccatcttcacgctgctctgattcata 6197229  T
Q  425 aatcaataaaaacattcatagattacgagctcaatagaggagaagatgtttggccaaaacttgccgaagctattgaagagtcacacatctccgtcgttgt 524  Q
    ||||||| ||||||| | | |||  |  |||  | |||||||||||| |||||||||  |||||| |||| ||||| || |||||  | ||| |||||||    
T  6197228 aatcaatcaaaacatacgtggatagcctgcttgaaagaggagaagatatttggccaactcttgccaaagcaattgaggaatcacatgtttccatcgttgt 6197129  T
Q  525 tttctctgaaaattttgcaacctcaaaatggtgtttggaagaactggtgaaagtgctgaaatgcagaaaagaccatggtcaagttgttatacctgttttc 624  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||| ||||| ||| |||||||||||| | | ||||||||||||||||||||||||    
T  6197128 tttctctgaaaattttgctacctcaacatggtgtttggaagaactggtcaaagtactggaatgcagaaaagtcaaaggtcaagttgttatacctgttttc 6197029  T
Q  625 tataaaacaaatccgtctcacataaaaaatcagactcacagttatgagaaagcatttgcaaaacacgagagagatcttgggaccaa 710  Q
    ||||||||| |||| ||| |||||| ||||||||||  |||||||||||| ||||| |||||||| ||| ||||||||||||||||    
T  6197028 tataaaacagatccatctgacataagaaatcagactggcagttatgagaatgcattcgcaaaacatgagcgagatcttgggaccaa 6196943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 13884565 - 13884508
Alignment:
Q  26 aaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 83  Q
    |||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||    
T  13884565 aaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaaggga 13884508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 2554110 - 2554178
Alignment:
Q  15 cataggagactaaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 83  Q
    |||||||||| ||||||| |||||||||||||||| || ||| |||| |||||||||||||||||||||    
T  2554110 cataggagaccaaattggaacaaattatagttaggggatcaaattgagacaatcaattaagttaaggga 2554178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 13884759 - 13884816
Alignment:
Q  26 aaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 83  Q
    |||||||||||||||||||||||| ||| || |||| |||||||||||||||||||||    
T  13884759 aaattggtacaaattatagttaggggactaaattgagacaatcaattaagttaaggga 13884816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 29714628 - 29714561
Alignment:
Q  16 ataggagactaaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 83  Q
    ||||| ||| ||||||||||||| ||||||| || |||||| |||| |||||||||||||||||||||    
T  29714628 ataggggaccaaattggtacaaactatagtttggggaccaaattgagacaatcaattaagttaaggga 29714561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 730 - 808
Target Start/End: Complemental strand, 6196938 - 6196860
Alignment:
Q  730 cttatagtgcttaagtggagatctgcccttgctgaagcagccactatatctggatgggacactcatactcacaagtaag 808  Q
    |||| ||||||||| |||| |  |||| | ||||||||||||||||||||||||||| ||||||| || ||||||||||    
T  6196938 cttaaagtgcttaactggaaagttgccttggctgaagcagccactatatctggatggcacactcaaacccacaagtaag 6196860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 29714813 - 29714870
Alignment:
Q  26 aaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 83  Q
    |||||| ||||||||||||||| | |||||| || |||||||||||||||||||||||    
T  29714813 aaattgatacaaattatagttaagggaccaaattaaaacaatcaattaagttaaggga 29714870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 42126655 - 42126712
Alignment:
Q  26 aaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 83  Q
    |||||||||||||||||||||||| || ||| |||| | |||||||||||||||||||    
T  42126655 aaattggtacaaattatagttaggggatcaaattgagataatcaattaagttaaggga 42126712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 26746012 - 26746066
Alignment:
Q  29 ttggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 83  Q
    ||||||||||||||| ||||| ||||||||||| |||| ||| ||||||||||||    
T  26746012 ttggtacaaattatatttaggggaccaatttgatacaaacaaataagttaaggga 26746066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 43416350 - 43416285
Alignment:
Q  15 cataggagactaaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaag 80  Q
    ||||||||| ||||||| ||||||||||||||||| ||  || || | ||||||||||||||||||    
T  43416350 cataggagattaaattgatacaaattatagttaggggattaaattaagacaatcaattaagttaag 43416285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 114
Target Start/End: Original strand, 11867953 - 11868041
Alignment:
Q  26 aaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaagggatatgtgattaaataagccataaataaataaa 114  Q
    |||||| ||||||||||||||| |  ||||| |||| |||||||||||||||||||   | |||||| ||||||||  |||| ||||||    
T  11867953 aaattgatacaaattatagttaaggaaccaaattgagacaatcaattaagttaaggaccaggtgattgaataagcctaaaattaataaa 11868041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 26745336 - 26745282
Alignment:
Q  29 ttggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 83  Q
    ||||||||||||||| ||||| |||||||||   |||| ||||||||||||||||    
T  26745336 ttggtacaaattatatttaggggaccaatttagtacaaacaattaagttaaggga 26745282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 176; Significance: 2e-94; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 343 - 790
Target Start/End: Original strand, 37450015 - 37450462
Alignment:
Q  343 aagtacgatgtgtttgtcagctttagaggcgaggacactcggtatggcatcaccaaccttatttacgatgctctgattcataaatcaataaaaacattca 442  Q
    ||||||||||||||  ||||||||||||||||||||||| | |  || |||||  ||| | |||| ||||||||||||||||||||||||||||||| ||    
T  37450015 aagtacgatgtgttcatcagctttagaggcgaggacactagattcggtatcacagaccatctttatgatgctctgattcataaatcaataaaaacataca 37450114  T
Q  443 tagattacgagctcaatagaggagaagatgtttggccaaaacttgccgaagctattgaagagtcacacatctccgtcgttgttttctctgaaaattttgc 542  Q
    |||||||| |||||||||||||||||||||||||||||  |||| || |||| ||||| || ||| |||||||| || ||||||||||||||||||||||    
T  37450115 tagattaccagctcaatagaggagaagatgtttggccagcactttccaaagcaattgaggactcatacatctccatcattgttttctctgaaaattttgc 37450214  T
Q  543 aacctcaaaatggtgtttggaagaactggtgaaagtgctgaaatgcagaaaagaccatggtcaagttgttatacctgttttctataaaacaaatccgtct 642  Q
     || ||||||||||||||||||||||| || ||||||||  |||| |||||||| ||||||||| |||||||||||||||| |||||| || |||| |||    
T  37450215 tacatcaaaatggtgtttggaagaactcgtcaaagtgctcgaatgtagaaaagatcatggtcaaattgttatacctgttttttataaagcagatccttct 37450314  T
Q  643 cacataaaaaatcagactcacagttatgagaaagcatttgcaaaacacgagagagatcttgggaccaaaagtaatgcatccaataaacttatagtgctta 742  Q
    ||||||| ||| ||||    |||||||||||  ||||| || ||||| ||| | || || |||||||||   |    |||||| |||  || ||||||||    
T  37450315 cacataagaaaccagaaagccagttatgagactgcattcgcgaaacatgagcgtgagctcgggaccaaagacagcatatccaacaaatctaaagtgctta 37450414  T
Q  743 agtggagatctgcccttgctgaagcagccactatatctggatgggaca 790  Q
    | |||| | |||||||| |||||||||||| |||||||||||||||||    
T  37450415 aatggaaagctgcccttactgaagcagccaatatatctggatgggaca 37450462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 21249449 - 21249381
Alignment:
Q  15 cataggagactaaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 83  Q
    |||||| |||||||||||||||| ||||| ||||| |||||| |||| ||||||||||| | |||||||    
T  21249449 cataggggactaaattggtacaatttataattaggggaccaaattgagacaatcaattacggtaaggga 21249381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 9e-23; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 47373722 - 47373805
Alignment:
Q  15 cataggagactaaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaagggatatgtgattaaataa 98  Q
    |||| |||||||||||||||||||||||| ||||| |||||| |||| |||||||||||||||||||||  |||||||||||||    
T  47373722 catatgagactaaattggtacaaattataattaggggaccaaattgagacaatcaattaagttaagggacctgtgattaaataa 47373805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 30862304 - 30862237
Alignment:
Q  16 ataggagactaaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 83  Q
    ||||| ||| |||||||||||||||||||||||| |||||| || | |||||||||||||||||||||    
T  30862304 ataggggaccaaattggtacaaattatagttaggggaccaaattcagacaatcaattaagttaaggga 30862237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 28715913 - 28715970
Alignment:
Q  26 aaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 83  Q
    |||||||||||||||||||||||| |||||| || | |||||||||||||||||||||    
T  28715913 aaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaaggga 28715970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 28715729 - 28715661
Alignment:
Q  15 cataggagactaaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 83  Q
    |||||| ||| |||||| |||||||||||||||||| ||||| || ||||||| |||||||||||||||    
T  28715729 cataggggaccaaattgatacaaattatagttaggaaaccaaattaaaacaattaattaagttaaggga 28715661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 38408174 - 38408228
Alignment:
Q  29 ttggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 83  Q
    ||||||||||||||| ||||| ||||||||||| |||| ||||||||||||||||    
T  38408174 ttggtacaaattatatttaggggaccaatttgatacaaacaattaagttaaggga 38408228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 6474367 - 6474298
Alignment:
Q  15 cataggagactaaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaagggat 84  Q
    |||||| ||| |||||| || |||||||||||||| || ||| |||| ||||||||||||||||||||||    
T  6474367 cataggggaccaaattgatataaattatagttaggggatcaaattgagacaatcaattaagttaagggat 6474298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 84
Target Start/End: Original strand, 6474562 - 6474609
Alignment:
Q  37 aattatagttaggagaccaatttgaaacaatcaattaagttaagggat 84  Q
    |||||||||||||||||||| || | ||||||||||||||||||||||    
T  6474562 aattatagttaggagaccaaattaagacaatcaattaagttaagggat 6474609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 41985978 - 41985929
Alignment:
Q  34 acaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 83  Q
    |||||||||||||||| || ||| |||| |||||||||||||||||||||    
T  41985978 acaaattatagttaggggatcaaattgagacaatcaattaagttaaggga 41985929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 41986183 - 41986234
Alignment:
Q  30 tggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaagg 81  Q
    |||||||||||||||||||| || ||| |||| |||| ||||||||||||||    
T  41986183 tggtacaaattatagttaggggatcaaattgagacaaacaattaagttaagg 41986234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 6271241 - 6271295
Alignment:
Q  29 ttggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 83  Q
    ||||||||||||||| ||||| ||||||||||  | || ||||||||||||||||    
T  6271241 ttggtacaaattatatttaggggaccaatttggtagaaacaattaagttaaggga 6271295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 38407505 - 38407451
Alignment:
Q  29 ttggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 83  Q
    ||||||||||||||| ||||| ||||||||||  |||| | ||||||||||||||    
T  38407505 ttggtacaaattatatttaggggaccaatttggtacaaaccattaagttaaggga 38407451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 30862491 - 30862548
Alignment:
Q  26 aaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 83  Q
    |||||| |||||||||||||||||  || || ||||||||||||||| | ||||||||    
T  30862491 aaattgatacaaattatagttagggaacaaaattgaaacaatcaattcaattaaggga 30862548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 40364228 - 40364285
Alignment:
Q  26 aaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 83  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  40364228 aaattggtacaaattatagttaggagaccaaattgaaacaatcaattaagttaaggga 40364285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 40244701 - 40244643
Alignment:
Q  26 aaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaagggat 84  Q
    |||||||||||||||||||||| | |||||| |||| ||||||||||||||||||||||    
T  40244701 aaattggtacaaattatagttaagggaccaaattgagacaatcaattaagttaagggat 40244643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 46003519 - 46003576
Alignment:
Q  26 aaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 83  Q
    ||||||||||||||| |||||||| |||||| |||| |||||||||||||||||||||    
T  46003519 aaattggtacaaattttagttaggggaccaaattgagacaatcaattaagttaaggga 46003576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 51663521 - 51663578
Alignment:
Q  26 aaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 83  Q
    |||||| ||||||||||||||||| |||||| |||| |||||||||||||||||||||    
T  51663521 aaattgctacaaattatagttaggggaccaaattgagacaatcaattaagttaaggga 51663578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 46003324 - 46003271
Alignment:
Q  26 aaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaa 79  Q
    |||||| ||||||||||||||||| |||||| || |||||||||||||||||||    
T  46003324 aaattgatacaaattatagttaggggaccaaattaaaacaatcaattaagttaa 46003271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 51663337 - 51663272
Alignment:
Q  15 cataggagactaaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaag 80  Q
    |||||| |||||||||| ||||||||||||||||  |||||  || ||||||||||||||||||||    
T  51663337 cataggggactaaattgatacaaattatagttagtggaccatattaaaacaatcaattaagttaag 51663272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 20538013 - 20537945
Alignment:
Q  15 cataggagactaaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 83  Q
    |||||| ||| ||||||| |||||||||||||||| || ||| |||| |  ||||||||||||||||||    
T  20538013 cataggggaccaaattggaacaaattatagttaggggatcaaattgataatatcaattaagttaaggga 20537945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 20538202 - 20538258
Alignment:
Q  23 actaaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaa 79  Q
    ||||||||| ||||||||||||||||| || ||| |||| |||||||||||| ||||    
T  20538202 actaaattgatacaaattatagttaggggatcaaattgagacaatcaattaaattaa 20538258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 83
Target Start/End: Original strand, 40244873 - 40244916
Alignment:
Q  40 tatagttaggagaccaatttgaaacaatcaattaagttaaggga 83  Q
    |||||||||| |||||| |||| |||||||||||||||||||||    
T  40244873 tatagttaggggaccaaattgagacaatcaattaagttaaggga 40244916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 9e-20; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 55173511 - 55173581
Alignment:
Q  13 agcataggagactaaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 83  Q
    |||||||| ||| ||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||    
T  55173511 agcataggggaccaaattggtacaaattatagttaggagatcaaattgagacaatcaattaagttaaggga 55173581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 39161554 - 39161613
Alignment:
Q  22 gactaaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaagg 81  Q
    |||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||    
T  39161554 gactaaattggtacaaattatagttaggggaccaaattaaaacaatcaattaagttaagg 39161613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 50509388 - 50509457
Alignment:
Q  15 cataggagactaaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaagggat 84  Q
    |||||| ||| |||||||||||||||||||||||| |||||| || | ||||||||||||||||||||||    
T  50509388 cataggggaccaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggat 50509457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 39161375 - 39161306
Alignment:
Q  15 cataggagactaaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaagggat 84  Q
    |||||| ||| |||||||||||||||||||||||| |||||| || | ||| ||||||||||||| ||||    
T  39161375 cataggggaccaaattggtacaaattatagttaggggaccaaattaagacattcaattaagttaaaggat 39161306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 101
Target Start/End: Complemental strand, 47096875 - 47096800
Alignment:
Q  26 aaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaagggat-atgtgattaaataagcc 101  Q
    ||||||||||||||||| |||||| |||||| |||| | |||||||||||||||||||| | |||||| ||||||||    
T  47096875 aaattggtacaaattat-gttaggggaccaaattgagataatcaattaagttaagggatcaggtgattgaataagcc 47096800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 9738191 - 9738137
Alignment:
Q  29 ttggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 83  Q
    ||||||||||||||| ||||| ||||||||||  |||| ||||||||||||||||    
T  9738191 ttggtacaaattatatttaggggaccaatttggtacaaacaattaagttaaggga 9738137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 9738956 - 9739010
Alignment:
Q  29 ttggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 83  Q
    ||||||||||||||| ||||| ||||||||||| |||| |||| |||||||||||    
T  9738956 ttggtacaaattatatttaggggaccaatttgatacaaacaatcaagttaaggga 9739010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 47097068 - 47097122
Alignment:
Q  26 aaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaag 80  Q
    |||||||||||||||||||||||  ||| || |||| ||||||||||||||||||    
T  47097068 aaattggtacaaattatagttagaggactaaattgagacaatcaattaagttaag 47097122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 37996152 - 37996083
Alignment:
Q  15 cataggagactaaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaagggat 84  Q
    |||||| ||| |||||| ||||||||||||||| | |||||| |||||||||||| || | |||||||||    
T  37996152 cataggggaccaaattgatacaaattatagttaagggaccaaattgaaacaatcattttaattaagggat 37996083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 55173403 - 55173355
Alignment:
Q  33 tacaaattatagttaggagaccaatttgaaacaatcaattaagttaagg 81  Q
    ||||||||||||||||| |||||| || | |||||||||||||||||||    
T  55173403 tacaaattatagttaggggaccaaattaagacaatcaattaagttaagg 55173355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0781 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0781
Description:

Target: scaffold0781; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 5295 - 5363
Alignment:
Q  15 cataggagactaaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 83  Q
    |||||| ||| |||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||    
T  5295 cataggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaaggga 5363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 2216838 - 2216906
Alignment:
Q  15 cataggagactaaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 83  Q
    |||||| ||| |||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||    
T  2216838 cataggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaaggga 2216906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 24690607 - 24690675
Alignment:
Q  16 ataggagactaaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaagggat 84  Q
    ||||| ||| ||||||||||||||||||||||||  ||||| || ||||||||||||||||||||||||    
T  24690607 ataggggaccaaattggtacaaattatagttagggaaccaaattaaaacaatcaattaagttaagggat 24690675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 24798701 - 24798644
Alignment:
Q  26 aaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 83  Q
    |||||||||||||||||||| ||| |||||| ||||||||| ||||||||||||||||    
T  24798701 aaattggtacaaattatagtcaggggaccaaattgaaacaaccaattaagttaaggga 24798644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 9955643 - 9955697
Alignment:
Q  29 ttggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 83  Q
    ||||||||||||||| ||||| ||||||||||| |||| ||||||||||||||||    
T  9955643 ttggtacaaattatatttaggggaccaatttgatacaaacaattaagttaaggga 9955697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 24690431 - 24690377
Alignment:
Q  26 aaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaag 80  Q
    |||||||||||||||||||| ||| |||||| |||| ||||||||||||||||||    
T  24690431 aaattggtacaaattatagtaaggggaccaaattgagacaatcaattaagttaag 24690377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 18494820 - 18494734
Alignment:
Q  15 cataggagactaaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga-tatgtgattaaataagcc 101  Q
    |||||| ||| ||| ||||||||||||||| |||| |||||| |||| ||||||||| |||||||||||  |||||||| ||||||||    
T  18494820 cataggggaccaaaatggtacaaattatagctagg-gaccaaattgagacaatcaataaagttaagggaccatgtgattgaataagcc 18494734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 9954880 - 9954826
Alignment:
Q  29 ttggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 83  Q
    ||||||||||||||| ||||| ||||||||||  |||| ||||||||||||||||    
T  9954880 ttggtacaaattatatttaggggaccaatttggtacaaacaattaagttaaggga 9954826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 11644018 - 11644076
Alignment:
Q  26 aaattggtacaaattatagttaggag-accaatttgaaacaatcaattaagttaaggga 83  Q
    |||||| ||||||||||||||||| | ||||| |||| |||||||||||||||||||||    
T  11644018 aaattgatacaaattatagttagggggaccaaattgagacaatcaattaagttaaggga 11644076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 11643825 - 11643768
Alignment:
Q  26 aaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 83  Q
    |||||| ||||||||||||||||| || ||| |||| |||||||||||| ||||||||    
T  11643825 aaattgatacaaattatagttaggggatcaaattgagacaatcaattaaattaaggga 11643768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 24798882 - 24798951
Alignment:
Q  15 cataggagactaaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaagggat 84  Q
    |||||| ||| |||||| ||||||||||||||||| || ||| || | |||||||||||| |||||||||    
T  24798882 cataggggaccaaattgatacaaattatagttaggggatcaaattaagacaatcaattaatttaagggat 24798951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 40987744 - 40987676
Alignment:
Q  15 cataggagactaaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 83  Q
    |||| ||||||||||||||||||||||||||||||  ||||| |||| |||||||||||||||||||||    
T  40987744 catatgagactaaattggtacaaattatagttagggaaccaaattgagacaatcaattaagttaaggga 40987676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 2916465 - 2916400
Alignment:
Q  15 cataggagactaaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaag 80  Q
    |||||| ||| |||||||||||||||||||||||| || ||| |||| ||||||||||||||||||    
T  2916465 cataggggaccaaattggtacaaattatagttaggggatcaaattgagacaatcaattaagttaag 2916400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 13559573 - 13559629
Alignment:
Q  27 aattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 83  Q
    ||||| |||||||||||||||||  ||||| ||||||||||||||||||||||||||    
T  13559573 aattgatacaaattatagttagggaaccaaattgaaacaatcaattaagttaaggga 13559629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 16973151 - 16973083
Alignment:
Q  15 cataggagactaaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 83  Q
    |||||| ||| ||||||||||||| |||||||||| |||||| || | |||||||||||||||||||||    
T  16973151 cataggggaccaaattggtacaaactatagttaggggaccaaattaagacaatcaattaagttaaggga 16973083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 16973343 - 16973411
Alignment:
Q  34 acaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga-tatgtgattaaataagcc 101  Q
    |||||||||||||||| |||||| |||| |||||||||||||||||||||  |||||||| ||||||||    
T  16973343 acaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccatgtgattgaataagcc 16973411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 24126194 - 24126245
Alignment:
Q  26 aaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagtt 77  Q
    ||||||||||||||||||||||||||||||| |||| | |||||||||||||    
T  24126194 aaattggtacaaattatagttaggagaccaaattgagaaaatcaattaagtt 24126245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 38982828 - 38982885
Alignment:
Q  26 aaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 83  Q
    |||||| ||||||||||||||| | |||||| |||| |||||||||||||||||||||    
T  38982828 aaattgatacaaattatagttaagggaccaaattgagacaatcaattaagttaaggga 38982885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 2916651 - 2916703
Alignment:
Q  29 ttggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaagg 81  Q
    ||||||||||| ||||||||| |||||| |||| |||||||||||||||||||    
T  2916651 ttggtacaaataatagttaggggaccaaattgagacaatcaattaagttaagg 2916703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 24125924 - 24125975
Alignment:
Q  26 aaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagtt 77  Q
    ||||||||||||||||||||||||||||||| |||| | ||| |||||||||    
T  24125924 aaattggtacaaattatagttaggagaccaaattgagaaaattaattaagtt 24125975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 11533716 - 11533770
Alignment:
Q  26 aaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaag 80  Q
    ||||||||||||||||||||| || |||||| |||| ||||||| ||||||||||    
T  11533716 aaattggtacaaattatagttgggggaccaaattgagacaatcacttaagttaag 11533770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 38982633 - 38982575
Alignment:
Q  26 aaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaagggat 84  Q
    ||||||||||||||||||||||||   |||| |||| ||||||||||||||||| ||||    
T  38982633 aaattggtacaaattatagttagggagccaaattgagacaatcaattaagttaaaggat 38982575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 44594325 - 44594267
Alignment:
Q  26 aaattggtacaaattatagttagg-agaccaatttgaaacaatcaattaagttaaggga 83  Q
    |||||| ||||||||||||||||| | ||||| |||| |||||||||||||||||||||    
T  44594325 aaattgatacaaattatagttagggacaccaaattgagacaatcaattaagttaaggga 44594267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 44594509 - 44594562
Alignment:
Q  26 aaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaa 79  Q
    |||||| ||||||||||||||||| |||||| |||| |||||||||||| ||||    
T  44594509 aaattgatacaaattatagttaggggaccaaattgagacaatcaattaaattaa 44594562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 24125737 - 24125689
Alignment:
Q  35 caaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 83  Q
    ||||||||||||||| || ||| |||| |||||||||||||||||||||    
T  24125737 caaattatagttaggggatcaaattgagacaatcaattaagttaaggga 24125689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 34826709 - 34826763
Alignment:
Q  29 ttggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 83  Q
    ||||||||||||| | ||| | ||||||||||| |||| ||||||||||||||||    
T  34826709 ttggtacaaattaaatttacgggaccaatttgatacaaacaattaagttaaggga 34826763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 10824629 - 10824697
Alignment:
Q  15 cataggagactaaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 83  Q
    |||||| ||| |||||| ||||||||||||||||| |||||| |||| |||||||||||||||||||||    
T  10824629 cataggggaccaaattgatacaaattatagttaggggaccaaattgagacaatcaattaagttaaggga 10824697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 19056411 - 19056479
Alignment:
Q  15 cataggagactaaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 83  Q
    ||||||| || ||||||||||| |||||||||||| |||||| || |||||||||||||||||||||||    
T  19056411 cataggataccaaattggtacagattatagttaggggaccaaattaaaacaatcaattaagttaaggga 19056479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 37189608 - 37189676
Alignment:
Q  15 cataggagactaaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 83  Q
    |||||| ||| ||||||||||||||||||| |||| |||||| |||| |||||||||||||||||||||    
T  37189608 cataggggaccaaattggtacaaattatagataggggaccaaattgagacaatcaattaagttaaggga 37189676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 37189443 - 37189388
Alignment:
Q  26 aaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaagg 81  Q
    |||||||||||||||||||||| |||||||| |||| |||||||||||||||||||    
T  37189443 aaattggtacaaattatagttatgagaccaaattgagacaatcaattaagttaagg 37189388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 18844546 - 18844478
Alignment:
Q  15 cataggagactaaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 83  Q
    |||||| ||| |||||| ||||||||||||||||| |||||| |||| | |||||||||||||||||||    
T  18844546 cataggggaccaaattgatacaaattatagttaggggaccaaattgagataatcaattaagttaaggga 18844478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 22683228 - 22683164
Alignment:
Q  15 cataggagactaaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaa 79  Q
    |||||| ||| |||||| ||||||||||||||||| |||||| |||| |||||||||||||||||    
T  22683228 cataggggaccaaattgatacaaattatagttaggggaccaaattgagacaatcaattaagttaa 22683164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 19056236 - 19056149
Alignment:
Q  16 ataggagactaaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaagggat-atgtgattaaataagcca 102  Q
    ||||| ||| |||||| ||||||||||| ||||| |||||| || | |||||||||||||||||||||| | |||||| |||||||||    
T  19056236 ataggggaccaaattgatacaaattataattaggggaccaaattaatacaatcaattaagttaagggatcaggtgattgaataagcca 19056149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 15825781 - 15825844
Alignment:
Q  15 cataggagactaaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaag 80  Q
    |||||| ||| |||||||||||||||||||||||  |||||| |||| ||||||||||||||||||    
T  15825781 cataggggaccaaattggtacaaattatagttag--gaccaaattgagacaatcaattaagttaag 15825844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 18844719 - 18844778
Alignment:
Q  26 aaattggtacaaattatagttagg-agaccaatttgaaacaatcaattaagttaagggat 84  Q
    |||||| ||||||||||||||||| | ||||| |||| ||||||||||||||||||||||    
T  18844719 aaattgatacaaattatagttagggacaccaaattgagacaatcaattaagttaagggat 18844778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 10824444 - 10824391
Alignment:
Q  26 aaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaa 79  Q
    |||||| ||||||||||| ||||| |||||| ||| || |||||||||||||||    
T  10824444 aaattgatacaaattataattaggggaccaaattgcaataatcaattaagttaa 10824391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 22976 - 23033
Alignment:
Q  26 aaattggtacaaattatagttaggagaccaatttgaaacaatcaattaagttaaggga 83  Q
    |||||||||||||||||||||||| |||||| || | |||||||||||||||||||||    
T  22976 aaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaaggga 23033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University