View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19675_low_51 (Length: 300)
Name: NF19675_low_51
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19675_low_51 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 19 - 228
Target Start/End: Complemental strand, 28244071 - 28243865
Alignment:
| Q |
19 |
caagaccacttgtcagaaaaattattatccaacaaaaaatattataagaacatatcctcctcccacacaaaaattccatcctctaaatttgttccacccc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
28244071 |
caagaccacttgtcagaaaaattattatccaacaaaaaatattataagaacatatcctcctcccacacaaaaattccatcctctaaatttgttccatccc |
28243972 |
T |
|
| Q |
119 |
tccaacaatatcccacccgatctagccatctttgctacagatacattttaactgatactaaatcaaatcatgcacttcactctctctaaacaaagatcac |
218 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
28243971 |
tccaac---atcccacccgatctagccatctttgctacagatacattttaactgataccaaatcaaatcattcacttcactctctctaaacaaagatcac |
28243875 |
T |
|
| Q |
219 |
cctgataaca |
228 |
Q |
| |
|
|||| ||||| |
|
|
| T |
28243874 |
cctggtaaca |
28243865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University