View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19675_low_53 (Length: 292)
Name: NF19675_low_53
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19675_low_53 |
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| [»] scaffold0003 (1 HSPs) |
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| [»] scaffold0231 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 5 - 275
Target Start/End: Complemental strand, 24027924 - 24027654
Alignment:
| Q |
5 |
tgtcgaagaatattcccaattgttgtttcatactcaatgacaatcaacaaatcacaaggtcaaagtcttgattgggttggtttatatttaccaaaagatg |
104 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24027924 |
tgtcgaagacaattcccaattgttgtttcatactcaatgacaatcaacaaatcacaaggtcaaagtcttgattgggttggtttatatttaccaaaagatg |
24027825 |
T |
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| Q |
105 |
tttttagtcatgaccaaatttatgttgcactttctagagtaacaagcaagaaaggtataaaaatcctggcacatgatgaaaacaaggtggcaaaattaac |
204 |
Q |
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|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
24027824 |
tttttaatcatggccaaatttatgttgcactttctagagtaacaagcaagaaaggtataaaaatcctggtacatgatgaaaacaaggtggcaaaactaac |
24027725 |
T |
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| Q |
205 |
aacaacaaatgttgtttttaaagaagttttccagaatgtttgacaggtaacttatatgtacattataaatc |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
24027724 |
aacaacaaatgttgtttttaaagaagttttccagaatgtttgacaggtaactaatatgaacattataaatc |
24027654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 41860289 - 41860339
Alignment:
| Q |
16 |
attcccaattgttgtttcatactcaatgacaatcaacaaatcacaaggtca |
66 |
Q |
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| T |
41860289 |
attcccaattgttgtctcatatgctatgacaatcaacaaatctcaaggtca |
41860339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 41888190 - 41888240
Alignment:
| Q |
16 |
attcccaattgttgtttcatactcaatgacaatcaacaaatcacaaggtca |
66 |
Q |
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| T |
41888190 |
attcccaattgttgtctcatatgctatgacaatcaacaaatctcaaggtca |
41888240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 149216 - 149044
Alignment:
| Q |
17 |
ttcccaattgttgtttcatactcaatgacaatcaacaaatcacaaggtcaaagtcttgattgggttggtttatatttaccaaaagatgtttttagtcatg |
116 |
Q |
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|||||||| |||| ||||| |||||||||| |||||||| ||||| || |||||||||||||||| |||||||||||| |||||| |||||||||| |
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| T |
149216 |
ttcccaataattgtgtcatatgcaatgacaattaacaaatctcaagggcagtctcttgattgggttggtctatatttaccaagagatgtatttagtcatg |
149117 |
T |
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| Q |
117 |
accaaatttatgttgcactttctagagtaacaagcaagaaaggtataaaaatcctggcacatgatgaaaacaa |
189 |
Q |
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| T |
149116 |
gtcaaatttatgttgccatatcaagggtaacaagcaaaaaaggtatcaaaattttgatacatgatgaaaacaa |
149044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 153
Target Start/End: Complemental strand, 22069978 - 22069865
Alignment:
| Q |
40 |
aatgacaatcaacaaatcacaaggtcaaagtcttgattgggttggtttatatttaccaaaagatgtttttagtcatgaccaaatttatgttgcactttct |
139 |
Q |
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|||||| ||||| ||||||||||||||| ||||||||||||||| | |||||||| |||||||| |||||||||| ||||| ||||||||| | || |
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| T |
22069978 |
aatgactatcaataaatcacaaggtcaatctcttgattgggttggactttatttacctaaagatgtatttagtcatgggcaaatatatgttgcaatctca |
22069879 |
T |
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| Q |
140 |
agagtaacaagcaa |
153 |
Q |
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||||| |||||||| |
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| T |
22069878 |
agagtcacaagcaa |
22069865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 21 - 162
Target Start/End: Complemental strand, 122522 - 122382
Alignment:
| Q |
21 |
caattgttgtttcatactcaatgacaatcaacaaatcacaaggtcaaagtcttgattgggttggtttatatttaccaaaagatgtttttagtcatgacca |
120 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| | | |||| ||||| | ||||| ||| |||| |||||| |||| || |
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| T |
122522 |
caattgttgtctcatactcaatgacaatcaacaaatcacaaggtcgatccttagattatgttggcctctatttggcaagagat-attttagccatggaca |
122424 |
T |
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| Q |
121 |
aatttatgttgcactttctagagtaacaagcaagaaaggtat |
162 |
Q |
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||||||||||||||||||||| || || ||||| |||||||| |
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| T |
122423 |
aatttatgttgcactttctagggtgactagcaaaaaaggtat |
122382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 116
Target Start/End: Original strand, 22322502 - 22322579
Alignment:
| Q |
39 |
caatgacaatcaacaaatcacaaggtcaaagtcttgattgggttggtttatatttaccaaaagatgtttttagtcatg |
116 |
Q |
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||||||||||||| |||||||||||||| | | ||| || ||||||||||| |||||||||||||||||||||| |
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| T |
22322502 |
caatgacaatcaataaatcacaaggtcagtctttggatcatgtaggtttatatttgccaaaagatgtttttagtcatg |
22322579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0231 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0231
Description:
Target: scaffold0231; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 9560 - 9593
Alignment:
| Q |
83 |
ggtttatatttaccaaaagatgtttttagtcatg |
116 |
Q |
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||||||||||| |||||||||||||||||||||| |
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| T |
9560 |
ggtttatatttgccaaaagatgtttttagtcatg |
9593 |
T |
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