View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19675_low_54 (Length: 289)
Name: NF19675_low_54
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19675_low_54 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 9 - 275
Target Start/End: Original strand, 28977015 - 28977279
Alignment:
| Q |
9 |
tatataataagaacctcacatttgtatactttatccatccattaattgaaatcattccctctaccacaacagtccctgtctaaggtccaaaacatctaaa |
108 |
Q |
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| T |
28977015 |
tatataataagaacctcacatttgtatactttatccatccatcaattgaaatcattccctctaccacaacagtccctgtctaaggtccaaaacatctaaa |
28977114 |
T |
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| Q |
109 |
accaaacaaattaaacatatatgcaagaatccatattaagccaactaattgccacgccatcttctcctcatcacacatatcacaagctagccttgactgt |
208 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28977115 |
accaaacaaatt-aacatatatgcaagaatccatattaagccaactaattgccacgccatcttctcctcatcacacatatcacaagctagccttgactgt |
28977213 |
T |
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| Q |
209 |
tttct-gtggacctcactatccccctatgatgcctcctatcaagaactagtaaatagcagataaatat |
275 |
Q |
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||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28977214 |
tttctagtggacctcactat--ccctatgatgcctcctatcaagaactagtaaatagcagataaatat |
28977279 |
T |
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