View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19675_low_59 (Length: 276)
Name: NF19675_low_59
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19675_low_59 |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 7746598 - 7746334
Alignment:
| Q |
1 |
tgactctaatgcatttacagctgcttctgccactgataatttccctcttaaaaacttaccaaaaactagtaaaggtatattaggccttgcaagaacacca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7746598 |
tgactctaatgcatttacagctgcttctgccactgataatttccctcttaaaaacttaccaaaaactagtaaaggtatattaggccttgcaagaacacca |
7746499 |
T |
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| Q |
101 |
ctttcattaccaaaacagctttcattagctcctcaaaaaattcttaacaagtttgttctttgtttaccatcttcaaacaaacttggtagtcttttcattg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
7746498 |
ctttcattaccaaaacagctttcattagctcctcaaaaaattcttaacaagtttgttctttgtttaccatcttcaaacaaacttggtagttttttcattg |
7746399 |
T |
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| Q |
201 |
gtggggtaccatctaattttgccaagtttaaactcactactattcctcttattattaaccccttt |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7746398 |
gtggggtaccatctaattttgccaagtttaaactcactactattcctcttattattaaccccttt |
7746334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 39 - 265
Target Start/End: Original strand, 7711032 - 7711258
Alignment:
| Q |
39 |
atttccctcttaaaaacttaccaaaaactagtaaaggtatattaggccttgcaagaacaccactttcattaccaaaacagctttcattagctcctcaaaa |
138 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7711032 |
atttccctctcaaaaacttaccaaaaactagtaaaggtatattaggccttgcaagaacaccactttcattaccaaaacagctttcattagctcctcaaaa |
7711131 |
T |
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| Q |
139 |
aattcttaacaagtttgttctttgtttaccatcttcaaacaaacttggtagtcttttcattggtggggtaccatctaattttgccaagtttaaactcact |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
7711132 |
aattcttaacaagtttgttctttgtttaccatcttcaaacaaacttggtagtatattcataggtggggtaccatctaattttgccaagtttaaactcact |
7711231 |
T |
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| Q |
239 |
actattcctcttattattaaccccttt |
265 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
7711232 |
actattcctcttattattaaccccttt |
7711258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 39 - 265
Target Start/End: Original strand, 7733342 - 7733568
Alignment:
| Q |
39 |
atttccctcttaaaaacttaccaaaaactagtaaaggtatattaggccttgcaagaacaccactttcattaccaaaacagctttcattagctcctcaaaa |
138 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
7733342 |
atttccctctcaaaaacttaccaaaaactagtaaaggtatattaggccttgcaagaacaccactttcattaccaaaacagctttcattagctccttttaa |
7733441 |
T |
|
| Q |
139 |
aattcttaacaagtttgttctttgtttaccatcttcaaacaaacttggtagtcttttcattggtggggtaccatctaattttgccaagtttaaactcact |
238 |
Q |
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| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| | || |||||||| |||||||| |
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| T |
7733442 |
acttcttaacaagtttgctctttgtttaccatcttcaaacaatcttggtagtcttttcattggtggggtaggatcttctctttccaagtttcaactcact |
7733541 |
T |
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| Q |
239 |
actattcctcttattattaaccccttt |
265 |
Q |
| |
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| |||||||| ||||||| |||||| |
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| T |
7733542 |
aaagttcctcttgttattaatcccttt |
7733568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 39 - 265
Target Start/End: Original strand, 7725920 - 7726146
Alignment:
| Q |
39 |
atttccctcttaaaaacttaccaaaaactagtaaaggtatattaggccttgcaagaacaccactttcattaccaaaacagctttcattagctcctcaaaa |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
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| T |
7725920 |
atttccctcttaaaaacttaccaaaaactagtaaaggtatattaggccttgcaagaacaccactgtcattaccaaaacagctttcattagctccttttaa |
7726019 |
T |
|
| Q |
139 |
aattcttaacaagtttgttctttgtttaccatcttcaaacaaacttggtagtcttttcattggtggggtaccatctaattttgccaagtttaaactcact |
238 |
Q |
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| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||| |||| | || |||||||| |||||||| |
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| T |
7726020 |
acttcttaacaagtttgctctttgtttaccatcttcaaacaatcttggtagtctttttattggtggggtaggatcttctctttccaagtttcaactcact |
7726119 |
T |
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| Q |
239 |
actattcctcttattattaaccccttt |
265 |
Q |
| |
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| |||||||| ||||||| |||||| |
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| T |
7726120 |
aaagttcctcttgttattaatcccttt |
7726146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 44 - 265
Target Start/End: Original strand, 7698999 - 7699235
Alignment:
| Q |
44 |
cctcttaaaaacttaccaaaaactagtaaaggtatattaggccttgcaagaacaccactttcattaccaaaacagctttcatta---gctcctcaaaaaa |
140 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||| | || |||| || |
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| T |
7698999 |
cctcttaaaaacttaccaaaaactagtaaagggatattaggccttgcaagaacaaaactttcactaccaaaacagctttcatcatcttcttctcataagc |
7699098 |
T |
|
| Q |
141 |
ttcttaacaagtttgttctttgtttaccatcttcaaacaa------acttggtagtcttttcattggtggggta--ccatctaa----ttttgccaagtt |
228 |
Q |
| |
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||| |||||| |||| |||||||||||||||||||||||| ||||||||| || |||||||||||| || ||| | || |||| |||||| |
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| T |
7699099 |
ttcctaacaaatttgctctttgtttaccatcttcaaacaagaaaggacttggtagcctcttcattggtgggataccccaacaaagttcttttttcaagtt |
7699198 |
T |
|
| Q |
229 |
taaactcactactattcctcttattattaaccccttt |
265 |
Q |
| |
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| ||||||||| ||||||||| |||||||||||||| |
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| T |
7699199 |
tcaactcactaaaattcctcttgttattaaccccttt |
7699235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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