View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19675_low_61 (Length: 275)
Name: NF19675_low_61
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19675_low_61 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 40 - 275
Target Start/End: Complemental strand, 46760963 - 46760716
Alignment:
| Q |
40 |
ctaaattaatcatattttttaccgtaactaaccaaatgtcgtgcatatgtatgaaaatggatattt------------ttccgttaaattaagtttgaaa |
127 |
Q |
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| T |
46760963 |
ctaaattaatcatattttttaccgtaactaaccaaatatcgtgcatatgtacgaaaatggatatttcatgtatcagttttccgttaaattaagtttgaag |
46760864 |
T |
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| Q |
128 |
aatgttaaatagtagttcaaagacattgattaagcaattaaaacaattaagtttttatgtaaaagtggtcggaacactagttgacaagacccattaaatt |
227 |
Q |
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| T |
46760863 |
aatgttaaatagtagtttaaagacattgattaagcaattaaaacaattaagtttttatgtaaaagtgatcgggatactagttgacaagagccactaagtt |
46760764 |
T |
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| Q |
228 |
tagttgtgacaaccttagctcgagacaaagggggcaacgggcaggata |
275 |
Q |
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| T |
46760763 |
tagttgtgacaaccttagcccgagacaaagggggcaacgggcaggata |
46760716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 46761907 - 46761865
Alignment:
| Q |
1 |
ttcaattgactaaccattaattcaattcactttattcaactaa |
43 |
Q |
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| T |
46761907 |
ttcaattgactaacccttaattcaattcactttattcaactaa |
46761865 |
T |
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