View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19675_low_62 (Length: 265)

Name: NF19675_low_62
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19675_low_62
NF19675_low_62
[»] chr4 (6 HSPs)
chr4 (13-250)||(7852953-7853190)
chr4 (109-244)||(5994882-5995019)
chr4 (121-244)||(51904630-51904755)
chr4 (187-244)||(37586480-37586537)
chr4 (187-244)||(16318907-16318964)
chr4 (123-250)||(34004756-34004884)
[»] chr2 (4 HSPs)
chr2 (139-244)||(6420469-6420574)
chr2 (121-244)||(19193517-19193642)
chr2 (129-244)||(18949209-18949326)
chr2 (203-244)||(20459028-20459069)
[»] chr7 (2 HSPs)
chr7 (121-246)||(2911802-2911929)
chr7 (109-178)||(33852552-33852621)
[»] chr8 (2 HSPs)
chr8 (187-250)||(38091459-38091522)
chr8 (187-244)||(24683680-24683737)
[»] chr5 (1 HSPs)
chr5 (187-244)||(41034444-41034501)
[»] chr1 (1 HSPs)
chr1 (111-152)||(15574668-15574709)
[»] chr6 (1 HSPs)
chr6 (216-244)||(32122812-32122840)


Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 7852953 - 7853190
Alignment:
Q  13 aaaatgtgcaaatctaaattcttcctcagaagaatcgatgtcatggatgttcgcctacttgagaaatgttaaaaacaatatctttttaacactcgatctc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  7852953 aaaatgtgcaaatctaaattcttcctcagaagaatcgatgtcatggatgttcgcctacttgagaaatgttaaaaacaatatctttttaacatttgatctc 7853052  T
Q  113 tttaatattcattctcttattagataaaattaatgtatgactcttcacttaaagtgaaatccatttttaaagttagacccatcatgacttaagctaataa 212  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7853053 ttcaatattcattctcttattagataaaattaatgtatgactcttcacttaaagtgaaatccatttttaaagttagacccatcatgacttaagctaataa 7853152  T
Q  213 gagagtgagtggtggaaagagtgttgaaaagaaaatgt 250  Q
    ||||||||||||||||||||||||||||||||||||||    
T  7853153 gagagtgagtggtggaaagagtgttgaaaagaaaatgt 7853190  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 244
Target Start/End: Complemental strand, 5995019 - 5994882
Alignment:
Q  109 tctctttaatattcattctcttattagataaaattaatgtatgactcttcacttaaagtgaaatccatttttaa--agttagacccatcatgacttaagc 206  Q
    ||||||||| | ||||||||||||| ||||||| |||||||||||||  ||||| ||||| || ||||||  ||   || ||||||| ||||| |||||     
T  5995019 tctctttaacactcattctcttattggataaaactaatgtatgactcaccactttaagtggaacccatttccaatgtgtgagacccaccatgatttaagt 5994920  T
Q  207 taataagagagtgagtggtggaaagagtgttgaaaaga 244  Q
     ||| ||| ||||| || |||| |||||||||||||||    
T  5994919 caattagaaagtgaatgttggagagagtgttgaaaaga 5994882  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 244
Target Start/End: Complemental strand, 51904755 - 51904630
Alignment:
Q  121 tcattctcttattagataaaattaatgtatgactcttcacttaaagtgaaatccatttttaaa--gttagacccatcatgacttaagctaataagagagt 218  Q
    ||||||||||||||||| |||| |||||||||| | |||||| ||||| || | ||||  |||  || ||||||| ||||| |||||| |||||||  ||    
T  51904755 tcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaatgt 51904656  T
Q  219 gagtggtggaaagagtgttgaaaaga 244  Q
     |||| | || |||||||||||||||    
T  51904655 aagtgttagagagagtgttgaaaaga 51904630  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 244
Target Start/End: Complemental strand, 37586537 - 37586480
Alignment:
Q  187 agacccatcatgacttaagctaataagagagtgagtggtggaaagagtgttgaaaaga 244  Q
    ||||||| ||||| |||||||||| ||| |||||||| |||| |||||||||||||||    
T  37586537 agacccaccatgatttaagctaattagaaagtgagtgttggagagagtgttgaaaaga 37586480  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 244
Target Start/End: Original strand, 16318907 - 16318964
Alignment:
Q  187 agacccatcatgacttaagctaataagagagtgagtggtggaaagagtgttgaaaaga 244  Q
    |||| |||||||| |||||| ||| ||| ||||| || ||||||||||||||||||||    
T  16318907 agactcatcatgatttaagccaattagaaagtgattgttggaaagagtgttgaaaaga 16318964  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 250
Target Start/End: Complemental strand, 34004884 - 34004756
Alignment:
Q  123 attctcttattagataaaattaatgtatgactcttcacttaaagtgaaatccatttttaaagttagacccatcatgacttaag-ctaataagagagtgag 221  Q
    ||||| ||||||||| ||| ||||||||||| |  |||||  ||||||| | ||| ||||||| |||| |||||| | ||||| | ||||| |  || ||    
T  34004884 attcttttattagatgaaagtaatgtatgacccaccacttttagtgaaacctattattaaagtgagactcatcataatttaagcccaataaaaatgtaag 34004785  T
Q  222 tggtggaaagagtgttgaaaagaaaatgt 250  Q
    ||||||| |||||||| |||||| |||||    
T  34004784 tggtggagagagtgttaaaaagagaatgt 34004756  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 139 - 244
Target Start/End: Complemental strand, 6420574 - 6420469
Alignment:
Q  139 aaattaatgtatgactcttcacttaaagtgaaatccatttttaaagttagacccatcatgacttaagctaataagagagtgagtggtggaaagagtgttg 238  Q
    ||||||||||||||| |  || || |||||||| | ||||  || || ||||||| ||||| |||||| ||||||| ||||||||||||| |||||||||    
T  6420574 aaattaatgtatgacccaccattttaagtgaaacctatttccaatgtgagacccaccatgatttaagccaataagaaagtgagtggtggagagagtgttg 6420475  T
Q  239 aaaaga 244  Q
    ||||||    
T  6420474 aaaaga 6420469  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 244
Target Start/End: Complemental strand, 19193642 - 19193517
Alignment:
Q  121 tcattctcttattagataaaattaatgtatgactcttcacttaaagtgaaatccatttttaaagtt--agacccatcatgacttaagctaataagagagt 218  Q
    ||||||||||||| |||||||  |||||||||| |  ||||| |||||||| | ||||  |||||   ||||||| ||||| |||| ||||| ||| |||    
T  19193642 tcattctcttattggataaaaccaatgtatgacccaccactttaagtgaaacctatttccaaagtatgagacccaccatgatttaaactaattagaaagt 19193543  T
Q  219 gagtggtggaaagagtgttgaaaaga 244  Q
    ||||| |||| |||||||||||||||    
T  19193542 gagtgttggagagagtgttgaaaaga 19193517  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 244
Target Start/End: Complemental strand, 18949326 - 18949209
Alignment:
Q  129 ttattagataaaattaatgtatgactcttcacttaaagtgaaatccatttttaaagtt--agacccatcatgacttaagctaataagagagtgagtggtg 226  Q
    ||||| |||||||  |||||||||  | |||||| ||||| || |||||||||||||   ||||||| ||||| |||||| ||| ||| | |||||| ||    
T  18949326 ttattggataaaaccaatgtatgatccatcactttaagtggaacccatttttaaagtgtgagacccaccatgatttaagccaattagaaattgagtgttg 18949227  T
Q  227 gaaagagtgttgaaaaga 244  Q
    || | |||||||||||||    
T  18949226 gagaaagtgttgaaaaga 18949209  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 20459028 - 20459069
Alignment:
Q  203 aagctaataagagagtgagtggtggaaagagtgttgaaaaga 244  Q
    |||| ||||||| ||||||||||||| |||||||||||||||    
T  20459028 aagccaataagaaagtgagtggtggagagagtgttgaaaaga 20459069  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 246
Target Start/End: Original strand, 2911802 - 2911929
Alignment:
Q  121 tcattctcttattagataaaattaatgtatgactcttcacttaaagtgaaatccatttttaaa--gttagacccatcatgacttaagctaataagagagt 218  Q
    |||||||||||||  ||| |||||||||||||||| |||||| ||||| || | |||| ||||  || ||| ||| ||||| |||||| ||||| | |||    
T  2911802 tcattctcttattgaatataattaatgtatgactcatcactttaagtggaacctatttctaaagtgtgagatccaccatgatttaagccaataaaaaagt 2911901  T
Q  219 gagtggtggaaagagtgttgaaaagaaa 246  Q
    ||||  |||| |||||||||||||||||    
T  2911902 gagtattggagagagtgttgaaaagaaa 2911929  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 33852621 - 33852552
Alignment:
Q  109 tctctttaatattcattctcttattagataaaattaatgtatgactcttcacttaaagtgaaatccattt 178  Q
    ||||||||| | ||||||||||||||||| |||||| |||||| | |  ||||| ||||| |||||||||    
T  33852621 tctctttaacactcattctcttattagatgaaattagtgtatgtcccaccactttaagtggaatccattt 33852552  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 250
Target Start/End: Original strand, 38091459 - 38091522
Alignment:
Q  187 agacccatcatgacttaagctaataagagagtgagtggtggaaagagtgttgaaaagaaaatgt 250  Q
    ||||| ||||||| |||||| ||| ||| |||||||| |||| ||||||||||||||| |||||    
T  38091459 agacctatcatgatttaagccaattagaaagtgagtgttggagagagtgttgaaaagagaatgt 38091522  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 244
Target Start/End: Original strand, 24683680 - 24683737
Alignment:
Q  187 agacccatcatgacttaagctaataagagagtgagtggtggaaagagtgttgaaaaga 244  Q
    ||||||||||||| |||||| ||| ||| |||||||| |||| | |||||||||||||    
T  24683680 agacccatcatgatttaagccaatcagaaagtgagtgttggagatagtgttgaaaaga 24683737  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 244
Target Start/End: Complemental strand, 41034501 - 41034444
Alignment:
Q  187 agacccatcatgacttaagctaataagagagtgagtggtggaaagagtgttgaaaaga 244  Q
    ||||||| ||||| |||||| ||| ||| |||||||| |||| |||||||||||||||    
T  41034501 agacccaccatgatttaagccaattagaaagtgagtgttggatagagtgttgaaaaga 41034444  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 152
Target Start/End: Original strand, 15574668 - 15574709
Alignment:
Q  111 tctttaatattcattctcttattagataaaattaatgtatga 152  Q
    ||||||| |||||||||||||||||||||||  |||||||||    
T  15574668 tctttaacattcattctcttattagataaaaacaatgtatga 15574709  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 244
Target Start/End: Complemental strand, 32122840 - 32122812
Alignment:
Q  216 agtgagtggtggaaagagtgttgaaaaga 244  Q
    |||||||||||||||||||||||||||||    
T  32122840 agtgagtggtggaaagagtgttgaaaaga 32122812  T

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