View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19675_low_63 (Length: 261)
Name: NF19675_low_63
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19675_low_63 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 27065918 - 27066153
Alignment:
| Q |
19 |
gcataggcataactgtcccttccttcaacattttctcccggaaaaacttaccaggttgaaccatgttttttgccaaactaccactatcactaagagagtt |
118 |
Q |
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| T |
27065918 |
gcataggcataactgtcccttccttcaacatcttctcccggaaaaacttaccaggttgaaccatgttttttgccaaactaccactatcactgagagagtt |
27066017 |
T |
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| Q |
119 |
agttgaagcagtagttttattataactagcaaaagaaatacctttcttgtcataatccttaaatgtattattattcccattgtaaactttaaacgaaacc |
218 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27066018 |
agttgaagtagtagttttattataactagcaaaagaaatacctttcttgtcataatccttaaatgtattattattcccattgtaaactttaaacgaaacc |
27066117 |
T |
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| Q |
219 |
ttatgatctaaatcagcacctttagcatagcctttg |
254 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
27066118 |
ttatgatctaaatcagcacctttagcatagcctttg |
27066153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 27079635 - 27079810
Alignment:
| Q |
19 |
gcataggcataactgtcccttccttcaacattttctcccggaaaaacttaccaggttgaaccatgttttttgccaaactaccactatcactaagagagtt |
118 |
Q |
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||||||||||||| ||||| |||||||| || || |||||||||||||||||||||||| ||||||||||||||| |||| ||||||| ||| || |
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| T |
27079635 |
gcataggcataaccaccccttgtttcaacatcttttctcggaaaaacttaccaggttgaacccatttttttgccaaactaacactttcactaacagaatt |
27079734 |
T |
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| Q |
119 |
agttgaagcagtag---ttttattataactagcaaaagaaatacctttcttgtcataatccttaaatgtattatta |
191 |
Q |
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| T |
27079735 |
tgttgaagaagaagatttcttagtataaccagcaaaagaaataccttttttatcgtaatccttaaacgtgttatta |
27079810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 27053476 - 27053538
Alignment:
| Q |
19 |
gcataggcataactgtcccttccttcaacattttctcccggaaaaacttaccaggttgaacca |
81 |
Q |
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||||||||||||| ||||||||||||||||| | || |||||||||||||| |||| ||||| |
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| T |
27053476 |
gcataggcataacagtcccttccttcaacatcctttcgcggaaaaacttacctggttcaacca |
27053538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 14866120 - 14866036
Alignment:
| Q |
19 |
gcataggcataactgtcccttccttcaacattttctcccggaaaaacttaccaggttgaaccatgttttttgccaaactaccact |
103 |
Q |
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|||||||||| || || ||||| |||||||||||||| | |||||||||||||| | |||| |||||| ||||||||||||| |
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| T |
14866120 |
gcataggcattaccgtaccttctttcaacattttctctctaaaaaacttaccaggctcaacccatttttttaccaaactaccact |
14866036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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