View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19675_low_67 (Length: 252)
Name: NF19675_low_67
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19675_low_67 |
 | |
|
| [»] chr2 (6 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 17 - 252
Target Start/End: Complemental strand, 7746856 - 7746621
Alignment:
| Q |
17 |
aatcctatggtatgactgcaacaaaacctacacttcttcaacctacaagcccatctcttgtcaatccaaactttgcactaatgatgctggatgcataagc |
116 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7746856 |
aatcttatggtatgactgcaacaaaacctacacttcttcaacctacaagcccatctcttgtcaatccaaactttgccctaatgatgctggatgcataagc |
7746757 |
T |
|
| Q |
117 |
tgcaatggccatttcaaaccaggttgctcaaacaacacatgtggtgctaacataattaacccattagttgatgctattttttcaggtgacactggcagtg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7746756 |
tgcaatggccatttcaaaccaggttgctcaaacaacacatgtggtgctaacataattaacccattagttgatgctattttttcaggtgacactggcagtg |
7746657 |
T |
|
| Q |
217 |
attttttgttcataccaaaatctaaaatccaaatcc |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
7746656 |
attttttgttcataccaaaatctaaaatccaaatcc |
7746621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 252
Target Start/End: Original strand, 7725639 - 7725874
Alignment:
| Q |
17 |
aatcctatggtatgactgcaacaaaacctacacttcttcaacctacaagcccatctcttgtcaatccaaactttgcactaatgatgctggatgcataagc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||| ||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
7725639 |
aatcctatggtatgactgcaacaaaacctacaattcttcagcctacaatcccatctcttgtgaatccaaacattgcactaatgatgctggatgcactagc |
7725738 |
T |
|
| Q |
117 |
tgcaatggccatttcaaaccaggttgctcaaacaacacatgtggtgctaacataattaacccattagttgatgctattttttcaggtgacactggcagtg |
216 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7725739 |
tgcaatggccctttcaaaccaggttgcacaaacaacacatgtggtgctaacataattaacccattagttgatgctattttttcaggtgacactggcagtg |
7725838 |
T |
|
| Q |
217 |
attttttgttcataccaaaatctaaaatccaaatcc |
252 |
Q |
| |
|
||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
7725839 |
attctttgttcataccaaaatctaaaatccatatcc |
7725874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 7710739 - 7710967
Alignment:
| Q |
17 |
aatcctatggtatgactgcaacaaaacctacacttcttcaacctacaagcccatctcttgtcaatccaaactttgcactaatgatgctggatgcataagc |
116 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
7710739 |
aatcctatggtatgactgcaacaaagcctacaactcttcaacctacaatcccatctcttgtgaatccaaacattgcactaatgatgctggatgcactagc |
7710838 |
T |
|
| Q |
117 |
tgcaatggccatttcaaaccaggttgctcaaacaacacatgtggtgctaacataattaacccattagttgatgctattttttcaggtgacactggcagtg |
216 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
7710839 |
tgcaatggtcctttcaaaccaggttgctcaaacaatacatgtggtgcaaacataattaatccattagttgatgcaattttttcaggtgacactggcagtg |
7710938 |
T |
|
| Q |
217 |
attttttgttcataccaaaatctaaaatc |
245 |
Q |
| |
|
|| ||||||||||||||||||||||||| |
|
|
| T |
7710939 |
atgctttgttcataccaaaatctaaaatc |
7710967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 7733049 - 7733277
Alignment:
| Q |
17 |
aatcctatggtatgactgcaacaaaacctacacttcttcaacctacaagcccatctcttgtcaatccaaactttgcactaatgatgctggatgcataagc |
116 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
7733049 |
aatcctatggtatgactgcaacaaagcctacaactcttcaacctacaatcccatctcttgtgaatccaaacattgcactaatgatgctggatgcactagc |
7733148 |
T |
|
| Q |
117 |
tgcaatggccatttcaaaccaggttgctcaaacaacacatgtggtgctaacataattaacccattagttgatgctattttttcaggtgacactggcagtg |
216 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
7733149 |
tgcaatggtcctttcaaaccaggttgctcaaacaatacatgtggtgcaaacataattaatccattagttgatgcaattttttcaggtgacactggcagtg |
7733248 |
T |
|
| Q |
217 |
attttttgttcataccaaaatctaaaatc |
245 |
Q |
| |
|
|| ||||||||||||||||||||||||| |
|
|
| T |
7733249 |
atgctttgttcataccaaaatctaaaatc |
7733277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 22 - 230
Target Start/End: Original strand, 7698721 - 7698929
Alignment:
| Q |
22 |
tatggtatgactgcaacaaaacctacacttcttcaacctacaagcccatctcttgtcaatccaaactttgcactaatgatgctggatgcataagctgcaa |
121 |
Q |
| |
|
||||||||||||||||||||| ||| | |||||||||||||| |||||||||||| | ||||| |||||| |||| | |||||||| ||||| |
|
|
| T |
7698721 |
tatggtatgactgcaacaaaaactataactcttcaacctacaatcccatctcttgtgactccaagctttgccctaaatttagtggatgcactggctgctc |
7698820 |
T |
|
| Q |
122 |
tggccatttcaaaccaggttgctcaaacaacacatgtggtgctaacataattaacccattagttgatgctattttttcaggtgacactggcagtgatttt |
221 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||| |||| || |
|
|
| T |
7698821 |
tggccctttcaaaccaggttgctcaaacaatacatgtgctgctaacataattaacccattagtcaatgctatttttgtaggtgacactggcaatgatgtt |
7698920 |
T |
|
| Q |
222 |
ttgttcata |
230 |
Q |
| |
|
||||||||| |
|
|
| T |
7698921 |
ttgttcata |
7698929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 7767617 - 7767568
Alignment:
| Q |
115 |
gctgcaatggccatttcaaaccaggttgctcaaacaacacatgtggtgct |
164 |
Q |
| |
|
|||||||||||| ||||| ||||||||| ||||||||||||||| |||| |
|
|
| T |
7767617 |
gctgcaatggcccattcaagccaggttgcacaaacaacacatgtgctgct |
7767568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University