View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19675_low_7 (Length: 803)

Name: NF19675_low_7
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19675_low_7
NF19675_low_7
[»] chr7 (14 HSPs)
chr7 (72-790)||(43318449-43319157)
chr7 (591-635)||(27121660-27121704)
chr7 (591-635)||(39591541-39591585)
chr7 (591-635)||(1417216-1417260)
chr7 (591-635)||(1792445-1792489)
chr7 (591-635)||(30456524-30456568)
chr7 (591-635)||(35536059-35536103)
chr7 (591-635)||(47046182-47046226)
chr7 (591-634)||(12835012-12835055)
chr7 (591-633)||(28178921-28178963)
chr7 (593-635)||(46825052-46825094)
chr7 (594-635)||(4572553-4572594)
chr7 (594-635)||(23918912-23918953)
chr7 (583-627)||(46749365-46749410)
[»] chr4 (7 HSPs)
chr4 (581-635)||(42321953-42322006)
chr4 (591-635)||(4071834-4071878)
chr4 (591-639)||(9680616-9680664)
chr4 (591-635)||(22684590-22684634)
chr4 (591-635)||(30024652-30024696)
chr4 (585-627)||(20105915-20105957)
chr4 (591-628)||(39438617-39438654)
[»] chr3 (12 HSPs)
chr3 (591-641)||(26990686-26990736)
chr3 (578-635)||(15304421-15304477)
chr3 (591-635)||(1395623-1395667)
chr3 (591-635)||(10101550-10101594)
chr3 (591-635)||(10212475-10212519)
chr3 (591-635)||(22232778-22232822)
chr3 (592-651)||(42808932-42808989)
chr3 (591-635)||(49586990-49587034)
chr3 (592-635)||(8007769-8007812)
chr3 (592-634)||(25195377-25195419)
chr3 (591-636)||(38462233-38462278)
chr3 (591-632)||(48364956-48364997)
[»] chr6 (6 HSPs)
chr6 (591-627)||(4006666-4006702)
chr6 (591-635)||(22742318-22742362)
chr6 (591-627)||(24836281-24836317)
chr6 (591-635)||(29274303-29274347)
chr6 (597-635)||(7713983-7714021)
chr6 (582-635)||(24782003-24782055)
[»] chr1 (13 HSPs)
chr1 (591-633)||(14737781-14737823)
chr1 (591-632)||(49517022-49517063)
chr1 (591-635)||(15360846-15360890)
chr1 (590-630)||(36496564-36496604)
chr1 (592-635)||(27738254-27738297)
chr1 (592-635)||(44032073-44032116)
chr1 (591-641)||(38867901-38867951)
chr1 (591-633)||(50319244-50319286)
chr1 (591-632)||(15709819-15709860)
chr1 (591-636)||(23895288-23895333)
chr1 (594-627)||(34179954-34179987)
chr1 (591-624)||(36641827-36641860)
chr1 (591-632)||(40357963-40358004)
[»] chr5 (8 HSPs)
chr5 (591-632)||(10303753-10303794)
chr5 (591-635)||(14295458-14295502)
chr5 (591-635)||(28586840-28586884)
chr5 (591-627)||(35095865-35095901)
chr5 (583-627)||(39128584-39128627)
chr5 (592-635)||(12595814-12595857)
chr5 (532-578)||(7554670-7554716)
chr5 (591-632)||(10363702-10363743)
[»] chr2 (4 HSPs)
chr2 (591-636)||(40837501-40837546)
chr2 (591-633)||(11344360-11344402)
chr2 (591-633)||(32098384-32098426)
chr2 (591-624)||(31461390-31461423)
[»] scaffold0024 (1 HSPs)
scaffold0024 (591-635)||(27528-27572)
[»] chr8 (8 HSPs)
chr8 (592-624)||(8062268-8062300)
chr8 (591-627)||(14482154-14482190)
chr8 (589-627)||(10437835-10437873)
chr8 (532-578)||(34563138-34563184)
chr8 (606-635)||(787180-787209)
chr8 (590-627)||(3537113-3537150)
chr8 (591-632)||(29699206-29699247)
chr8 (591-632)||(42597353-42597394)


Alignment Details
Target: chr7 (Bit Score: 628; Significance: 0; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 628; E-Value: 0
Query Start/End: Original strand, 72 - 790
Target Start/End: Complemental strand, 43319157 - 43318449
Alignment:
Q  72 ttggacagtagtcttagaactagagcacaagttctgcaactacatgaatatcaacatacattgtgacatgtatagaactgaacaaatcaataagaattca 171  Q
    |||||||||||| |||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  43319157 ttggacagtagttttagaactagagcaaaagttcagcaactacatgaataacaacatacattgtgacatgtatagaactgaacaaatcaataagaattca 43319058  T
Q  172 agatccagaactatgtggatctggcctgctcaagcccatctagttacaagtaaaatatgttcactaatagtgttacttgctaaaattttaagcatacctt 271  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  43319057 agatccagaactatgtggatctggcctgctcaagcacatctagttacaagtaaaatatgtttactaattgtgttacttgctaaaattttaagcatacctt 43318958  T
Q  272 tcctttctgaattccctctttagccaatgacaaaagatcctgaaaatgcttttctggatctccactctcctcaaattcctaaattaaaacaccaagtcac 371  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  43318957 tcctttctgaattccctctttagccaatgacaaaagatcctgaaaatgcttttcaggatctccactctcctcaaattcctaaattaaaacaccaagtcac 43318858  T
Q  372 atttacaaacactt-ccatcaaaccactgcaggtaaaaataccaaaagagtaaagaaaatcaaccttgcaacgtgttggatgcacaccaacagtacagaa 470  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43318857 atttacaaacacttcccatcaaaccactgcaggtaaaaataccaaaagagtaaagaaaatcaaccttgcaacgtgttggatgcacaccaacagtacagaa 43318758  T
Q  471 aagtcttcctatgatcaaacaatcaatcaataaattatcatcaaaataaggccatatttccataaacaacttaattaaatgcctatagcgtaagcattta 570  Q
    |||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43318757 aagtcttcctatg--------atcaatcaataaattatcatcaaaataaggccatatttccataaacaacttaattaaatgcctatagcgtaagcattta 43318666  T
Q  571 tcatataatagaataagctaatttctataacaaatgataaaataaagtcaaattgttatcatatataagctgatttcataaatgataaaatgacatacca 670  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||    
T  43318665 tcatataatagaataagct-atttctataacaaatgataaaataaagtcaaattgttatc--atataagctgatttcataagtgataaaatgacatacca 43318569  T
Q  671 tcagtttcagcaatggcaagagcttcccttgattcctgaagggatccaccagttacgatgattcggtgaacaccagcagcccaagctctgttcaaaacgg 770  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43318568 tcagtttcagcaatggcaagagcttcccttgattcctgaagggatccaccagttacgatgattcggtgaacaccagcagcccaagctctgttcaaaacgg 43318469  T
Q  771 ttggaatatcagcaacatga 790  Q
    ||||||||||||||||||||    
T  43318468 ttggaatatcagcaacatga 43318449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 591 - 635
Target Start/End: Complemental strand, 27121704 - 27121660
Alignment:
Q  591 atttctataacaaatgataaaataaagtcaaattgttatcatata 635  Q
    |||||||||| |||||||||||||||||||||||||| |||||||    
T  27121704 atttctataataaatgataaaataaagtcaaattgttttcatata 27121660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 591 - 635
Target Start/End: Complemental strand, 39591585 - 39591541
Alignment:
Q  591 atttctataacaaatgataaaataaagtcaaattgttatcatata 635  Q
    |||||||||||||| |||||||||||||||||||||| |||||||    
T  39591585 atttctataacaaaagataaaataaagtcaaattgttttcatata 39591541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 591 - 635
Target Start/End: Original strand, 1417216 - 1417260
Alignment:
Q  591 atttctataacaaatgataaaataaagtcaaattgttatcatata 635  Q
    |||| ||||||||| |||||||||||||||||||||| |||||||    
T  1417216 atttatataacaaaagataaaataaagtcaaattgttttcatata 1417260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 591 - 635
Target Start/End: Original strand, 1792445 - 1792489
Alignment:
Q  591 atttctataacaaatgataaaataaagtcaaattgttatcatata 635  Q
    |||||||||||||||||| ||||||||||||||| ||| ||||||    
T  1792445 atttctataacaaatgatgaaataaagtcaaattattaccatata 1792489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 591 - 635
Target Start/End: Complemental strand, 30456568 - 30456524
Alignment:
Q  591 atttctataacaaatgataaaataaagtcaaattgttatcatata 635  Q
    ||||||| |||||| |||||||||||||||||||||| |||||||    
T  30456568 atttctaaaacaaaagataaaataaagtcaaattgttttcatata 30456524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 591 - 635
Target Start/End: Original strand, 35536059 - 35536103
Alignment:
Q  591 atttctataacaaatgataaaataaagtcaaattgttatcatata 635  Q
    |||||||||||| | |||||||||||||||||||||| |||||||    
T  35536059 atttctataacataagataaaataaagtcaaattgttttcatata 35536103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 591 - 635
Target Start/End: Complemental strand, 47046226 - 47046182
Alignment:
Q  591 atttctataacaaatgataaaataaagtcaaattgttatcatata 635  Q
    ||||||| |||||| |||||||||||||||||||||| |||||||    
T  47046226 atttctacaacaaaggataaaataaagtcaaattgttttcatata 47046182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 591 - 634
Target Start/End: Complemental strand, 12835055 - 12835012
Alignment:
Q  591 atttctataacaaatgataaaataaagtcaaattgttatcatat 634  Q
    ||||||| |||||| |||||||||||||||||||||| ||||||    
T  12835055 atttctacaacaaaagataaaataaagtcaaattgttttcatat 12835012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 591 - 633
Target Start/End: Original strand, 28178921 - 28178963
Alignment:
Q  591 atttctataacaaatgataaaataaagtcaaattgttatcata 633  Q
    |||||||||||||| ||||||||||||||| |||||| |||||    
T  28178921 atttctataacaaaagataaaataaagtcatattgttttcata 28178963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 593 - 635
Target Start/End: Original strand, 46825052 - 46825094
Alignment:
Q  593 ttctataacaaatgataaaataaagtcaaattgttatcatata 635  Q
    |||||||| ||| |||||||||||||||||||||| |||||||    
T  46825052 ttctataaaaaaagataaaataaagtcaaattgttttcatata 46825094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 594 - 635
Target Start/End: Original strand, 4572553 - 4572594
Alignment:
Q  594 tctataacaaatgataaaataaagtcaaattgttatcatata 635  Q
    ||||||||||| |||||||||||||||| ||| |||||||||    
T  4572553 tctataacaaaagataaaataaagtcaatttgatatcatata 4572594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 594 - 635
Target Start/End: Original strand, 23918912 - 23918953
Alignment:
Q  594 tctataacaaatgataaaataaagtcaaattgttatcatata 635  Q
    ||||| ||||| |||||||||||||||||||||| |||||||    
T  23918912 tctattacaaaagataaaataaagtcaaattgttttcatata 23918953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 583 - 627
Target Start/End: Complemental strand, 46749410 - 46749365
Alignment:
Q  583 ataagctaatttctataa-caaatgataaaataaagtcaaattgtt 627  Q
    |||||||||||||||||| |||| ||||||||||||| ||||||||    
T  46749410 ataagctaatttctataaacaaaagataaaataaagtgaaattgtt 46749365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 581 - 635
Target Start/End: Complemental strand, 42322006 - 42321953
Alignment:
Q  581 gaataagctaatttctataacaaatgataaaataaagtcaaattgttatcatata 635  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||| |||||||    
T  42322006 gaataagctatttt-tataacaaatgataaaataaagtcaaattgttttcatata 42321953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 591 - 635
Target Start/End: Original strand, 4071834 - 4071878
Alignment:
Q  591 atttctataacaaatgataaaataaagtcaaattgttatcatata 635  Q
    |||||||||||||| ||||||||||||||||||| || |||||||    
T  4071834 atttctataacaaaagataaaataaagtcaaattattttcatata 4071878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 591 - 639
Target Start/End: Original strand, 9680616 - 9680664
Alignment:
Q  591 atttctataacaaatgataaaataaagtcaaattgttatcatatataag 639  Q
    ||||| |||| ||| |||||||||||||||||||||| |||||||||||    
T  9680616 atttcgataataaaagataaaataaagtcaaattgttctcatatataag 9680664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 591 - 635
Target Start/End: Complemental strand, 22684634 - 22684590
Alignment:
Q  591 atttctataacaaatgataaaataaagtcaaattgttatcatata 635  Q
    |||||||||||||| | |||||||||||||||||||| |||||||    
T  22684634 atttctataacaaacggtaaaataaagtcaaattgttttcatata 22684590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 591 - 635
Target Start/End: Original strand, 30024652 - 30024696
Alignment:
Q  591 atttctataacaaatgataaaataaagtcaaattgttatcatata 635  Q
    |||||||||||||| ||||||||||||| |||||||| |||||||    
T  30024652 atttctataacaaaagataaaataaagtaaaattgttttcatata 30024696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 585 - 627
Target Start/End: Complemental strand, 20105957 - 20105915
Alignment:
Q  585 aagctaatttctataacaaatgataaaataaagtcaaattgtt 627  Q
    |||||| |||||||||||||  |||||||||||||||||||||    
T  20105957 aagctattttctataacaaaatataaaataaagtcaaattgtt 20105915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 591 - 628
Target Start/End: Complemental strand, 39438654 - 39438617
Alignment:
Q  591 atttctataacaaatgataaaataaagtcaaattgtta 628  Q
    |||||||||||| | |||||||||||||||||||||||    
T  39438654 atttctataacataagataaaataaagtcaaattgtta 39438617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 591 - 641
Target Start/End: Original strand, 26990686 - 26990736
Alignment:
Q  591 atttctataacaaatgataaaataaagtcaaattgttatcatatataagct 641  Q
    |||||||||||||| ||||||||||||||||||| || |||||||||||||    
T  26990686 atttctataacaaaagataaaataaagtcaaattcttttcatatataagct 26990736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 578 - 635
Target Start/End: Complemental strand, 15304477 - 15304421
Alignment:
Q  578 atagaataagctaatttctataacaaatgataaaataaagtcaaattgttatcatata 635  Q
    |||| |||||||| ||||||||||||| ||||||||||||| |||||||| |||||||    
T  15304477 ataggataagcta-tttctataacaaaagataaaataaagttaaattgttttcatata 15304421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 591 - 635
Target Start/End: Original strand, 1395623 - 1395667
Alignment:
Q  591 atttctataacaaatgataaaataaagtcaaattgttatcatata 635  Q
    |||||||||||||| ||||||||||||||||||| || |||||||    
T  1395623 atttctataacaaaagataaaataaagtcaaattattttcatata 1395667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 591 - 635
Target Start/End: Complemental strand, 10101594 - 10101550
Alignment:
Q  591 atttctataacaaatgataaaataaagtcaaattgttatcatata 635  Q
    |||||||||||||| ||||||||||||| |||||||| |||||||    
T  10101594 atttctataacaaaagataaaataaagttaaattgttttcatata 10101550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 591 - 635
Target Start/End: Complemental strand, 10212519 - 10212475
Alignment:
Q  591 atttctataacaaatgataaaataaagtcaaattgttatcatata 635  Q
    |||||||||||||| ||||||||||||| |||||||| |||||||    
T  10212519 atttctataacaaaagataaaataaagttaaattgttttcatata 10212475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 591 - 635
Target Start/End: Original strand, 22232778 - 22232822
Alignment:
Q  591 atttctataacaaatgataaaataaagtcaaattgttatcatata 635  Q
    |||| ||||||||||||||||||||||||||| |||| |||||||    
T  22232778 atttatataacaaatgataaaataaagtcaaactgttttcatata 22232822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 592 - 651
Target Start/End: Original strand, 42808932 - 42808989
Alignment:
Q  592 tttctataacaaatgataaaataaagtcaaattgttatcatatataagctgatttcataa 651  Q
    ||||||||||||| ||||||||||||| |||||||| |  ||||||||||| ||||||||    
T  42808932 tttctataacaaaagataaaataaagttaaattgtttt--tatataagctgttttcataa 42808989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 591 - 635
Target Start/End: Complemental strand, 49587034 - 49586990
Alignment:
Q  591 atttctataacaaatgataaaataaagtcaaattgttatcatata 635  Q
    |||||||||||||| ||||||||||||||||| |||| |||||||    
T  49587034 atttctataacaaaagataaaataaagtcaaactgttttcatata 49586990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 592 - 635
Target Start/End: Complemental strand, 8007812 - 8007769
Alignment:
Q  592 tttctataacaaatgataaaataaagtcaaattgttatcatata 635  Q
    ||||||||||||| |||||| |||||||||| ||||||||||||    
T  8007812 tttctataacaaaagataaagtaaagtcaaactgttatcatata 8007769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 592 - 634
Target Start/End: Original strand, 25195377 - 25195419
Alignment:
Q  592 tttctataacaaatgataaaataaagtcaaattgttatcatat 634  Q
    ||||||||||||| ||||||||||||||||||| || ||||||    
T  25195377 tttctataacaaaagataaaataaagtcaaattattttcatat 25195419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 591 - 636
Target Start/End: Original strand, 38462233 - 38462278
Alignment:
Q  591 atttctataacaaatgataaaataaagtcaaattgttatcatatat 636  Q
    ||||||||| |||| ||||||||||||||||| |||| ||||||||    
T  38462233 atttctataccaaaagataaaataaagtcaaactgttttcatatat 38462278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 591 - 632
Target Start/End: Complemental strand, 48364997 - 48364956
Alignment:
Q  591 atttctataacaaatgataaaataaagtcaaattgttatcat 632  Q
    ||||| |||||||| |||||||||||||||||||||| ||||    
T  48364997 atttcgataacaaaagataaaataaagtcaaattgttttcat 48364956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 591 - 627
Target Start/End: Original strand, 4006666 - 4006702
Alignment:
Q  591 atttctataacaaatgataaaataaagtcaaattgtt 627  Q
    |||||||||||||||||||||||||||||||||||||    
T  4006666 atttctataacaaatgataaaataaagtcaaattgtt 4006702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 591 - 635
Target Start/End: Original strand, 22742318 - 22742362
Alignment:
Q  591 atttctataacaaatgataaaataaagtcaaattgttatcatata 635  Q
    |||| ||||||||| |||||||||||||||||||||| |||||||    
T  22742318 atttgtataacaaaggataaaataaagtcaaattgttttcatata 22742362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 591 - 627
Target Start/End: Complemental strand, 24836317 - 24836281
Alignment:
Q  591 atttctataacaaatgataaaataaagtcaaattgtt 627  Q
    |||||||||||||| ||||||||||||||||||||||    
T  24836317 atttctataacaaaagataaaataaagtcaaattgtt 24836281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 591 - 635
Target Start/End: Complemental strand, 29274347 - 29274303
Alignment:
Q  591 atttctataacaaatgataaaataaagtcaaattgttatcatata 635  Q
    ||||||||| |||| |||||||||||||||||||||| |||||||    
T  29274347 atttctatagcaaaagataaaataaagtcaaattgttttcatata 29274303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 597 - 635
Target Start/End: Original strand, 7713983 - 7714021
Alignment:
Q  597 ataacaaatgataaaataaagtcaaattgttatcatata 635  Q
    |||||||| |||||||||||||||||||||| |||||||    
T  7713983 ataacaaaagataaaataaagtcaaattgttttcatata 7714021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 582 - 635
Target Start/End: Original strand, 24782003 - 24782055
Alignment:
Q  582 aataagctaatttctataacaaatgataaaataaagtcaaattgttatcatata 635  Q
    ||||||||| ||||||||||||| |||||||| || |||||||||| |||||||    
T  24782003 aataagcta-tttctataacaaaagataaaatcaaatcaaattgttttcatata 24782055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 591 - 633
Target Start/End: Complemental strand, 14737823 - 14737781
Alignment:
Q  591 atttctataacaaatgataaaataaagtcaaattgttatcata 633  Q
    |||||||||||||| |||||||||||||||||||||| |||||    
T  14737823 atttctataacaaaagataaaataaagtcaaattgttttcata 14737781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 591 - 632
Target Start/End: Original strand, 49517022 - 49517063
Alignment:
Q  591 atttctataacaaatgataaaataaagtcaaattgttatcat 632  Q
    |||||||||||||| |||||||||||||||||||||| ||||    
T  49517022 atttctataacaaaagataaaataaagtcaaattgttttcat 49517063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 591 - 635
Target Start/End: Original strand, 15360846 - 15360890
Alignment:
Q  591 atttctataacaaatgataaaataaagtcaaattgttatcatata 635  Q
    |||||||||||||| ||||||||||||||||| |||| |||||||    
T  15360846 atttctataacaaaagataaaataaagtcaaactgttttcatata 15360890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 590 - 630
Target Start/End: Complemental strand, 36496604 - 36496564
Alignment:
Q  590 aatttctataacaaatgataaaataaagtcaaattgttatc 630  Q
    ||||||||||||||| ||||||||| |||||||||||||||    
T  36496604 aatttctataacaaaggataaaatatagtcaaattgttatc 36496564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 592 - 635
Target Start/End: Complemental strand, 27738297 - 27738254
Alignment:
Q  592 tttctataacaaatgataaaataaagtcaaattgttatcatata 635  Q
    |||||| |||||| |||||||||||||||||||||| |||||||    
T  27738297 tttctacaacaaaagataaaataaagtcaaattgttttcatata 27738254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 592 - 635
Target Start/End: Complemental strand, 44032116 - 44032073
Alignment:
Q  592 tttctataacaaatgataaaataaagtcaaattgttatcatata 635  Q
    ||||||||||||| | |||||||||||||||||||| |||||||    
T  44032116 tttctataacaaaagctaaaataaagtcaaattgttttcatata 44032073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 591 - 641
Target Start/End: Complemental strand, 38867951 - 38867901
Alignment:
Q  591 atttctataacaaatgataaaataaagtcaaattgttatcatatataagct 641  Q
    ||||||||| |||| ||| ||||||||||||| |||| |||||||||||||    
T  38867951 atttctataccaaaagattaaataaagtcaaaatgttttcatatataagct 38867901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 591 - 633
Target Start/End: Original strand, 50319244 - 50319286
Alignment:
Q  591 atttctataacaaatgataaaataaagtcaaattgttatcata 633  Q
    |||||||||||||| |||||||||||||||| ||||| |||||    
T  50319244 atttctataacaaaagataaaataaagtcaagttgttttcata 50319286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 591 - 632
Target Start/End: Original strand, 15709819 - 15709860
Alignment:
Q  591 atttctataacaaatgataaaataaagtcaaattgttatcat 632  Q
    ||||||||||||||||||||||| |||||||| |||| ||||    
T  15709819 atttctataacaaatgataaaattaagtcaaactgttttcat 15709860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 591 - 636
Target Start/End: Original strand, 23895288 - 23895333
Alignment:
Q  591 atttctataacaaatgataaaataaagtcaaattgttatcatatat 636  Q
    |||||||||||||| ||||||||||| ||||| |||| ||||||||    
T  23895288 atttctataacaaaagataaaataaattcaaactgttctcatatat 23895333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 594 - 627
Target Start/End: Complemental strand, 34179987 - 34179954
Alignment:
Q  594 tctataacaaatgataaaataaagtcaaattgtt 627  Q
    ||||||||||| ||||||||||||||||||||||    
T  34179987 tctataacaaaagataaaataaagtcaaattgtt 34179954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 591 - 624
Target Start/End: Original strand, 36641827 - 36641860
Alignment:
Q  591 atttctataacaaatgataaaataaagtcaaatt 624  Q
    |||||||||||||| |||||||||||||||||||    
T  36641827 atttctataacaaaagataaaataaagtcaaatt 36641860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 591 - 632
Target Start/End: Complemental strand, 40358004 - 40357963
Alignment:
Q  591 atttctataacaaatgataaaataaagtcaaattgttatcat 632  Q
    |||||||||||||  |||||||||||||||||||||| ||||    
T  40358004 atttctataacaatggataaaataaagtcaaattgttttcat 40357963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 591 - 632
Target Start/End: Original strand, 10303753 - 10303794
Alignment:
Q  591 atttctataacaaatgataaaataaagtcaaattgttatcat 632  Q
    |||||||||||||| |||||||||||||||||||||| ||||    
T  10303753 atttctataacaaaagataaaataaagtcaaattgttttcat 10303794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 591 - 635
Target Start/End: Original strand, 14295458 - 14295502
Alignment:
Q  591 atttctataacaaatgataaaataaagtcaaattgttatcatata 635  Q
    |||||||||||||| ||||||||||||||||| |||| |||||||    
T  14295458 atttctataacaaaagataaaataaagtcaaactgttttcatata 14295502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 591 - 635
Target Start/End: Complemental strand, 28586884 - 28586840
Alignment:
Q  591 atttctataacaaatgataaaataaagtcaaattgttatcatata 635  Q
    |||||||||||||| ||||||||||||||||| |||| |||||||    
T  28586884 atttctataacaaaagataaaataaagtcaaactgttttcatata 28586840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 591 - 627
Target Start/End: Complemental strand, 35095901 - 35095865
Alignment:
Q  591 atttctataacaaatgataaaataaagtcaaattgtt 627  Q
    |||||||||||||| ||||||||||||||||||||||    
T  35095901 atttctataacaaaagataaaataaagtcaaattgtt 35095865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 583 - 627
Target Start/End: Original strand, 39128584 - 39128627
Alignment:
Q  583 ataagctaatttctataacaaatgataaaataaagtcaaattgtt 627  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||    
T  39128584 ataagctaatt-ctataacaaaagataaaataaagtcaaattgtt 39128627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 592 - 635
Target Start/End: Complemental strand, 12595857 - 12595814
Alignment:
Q  592 tttctataacaaatgataaaataaagtcaaattgttatcatata 635  Q
    ||||||||||||| ||||||||||||| |||||||| |||||||    
T  12595857 tttctataacaaaagataaaataaagttaaattgttttcatata 12595814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 532 - 578
Target Start/End: Original strand, 7554670 - 7554716
Alignment:
Q  532 ataaacaacttaattaaatgcctatagcgtaagcatttatcatataa 578  Q
    |||||||||||||| |||||| |||||| ||| ||||||||||||||    
T  7554670 ataaacaacttaatcaaatgcgtatagcataaacatttatcatataa 7554716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 591 - 632
Target Start/End: Original strand, 10363702 - 10363743
Alignment:
Q  591 atttctataacaaatgataaaataaagtcaaattgttatcat 632  Q
    |||||||||||||| ||||||||||||| |||||||| ||||    
T  10363702 atttctataacaaaagataaaataaagttaaattgttttcat 10363743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 591 - 636
Target Start/End: Complemental strand, 40837546 - 40837501
Alignment:
Q  591 atttctataacaaatgataaaataaagtcaaattgttatcatatat 636  Q
    |||||||||||||| |||||| ||||||||||||||| ||||||||    
T  40837546 atttctataacaaaagataaattaaagtcaaattgttttcatatat 40837501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 591 - 633
Target Start/End: Complemental strand, 11344402 - 11344360
Alignment:
Q  591 atttctataacaaatgataaaataaagtcaaattgttatcata 633  Q
    |||||||||||||| ||||||| |||||||||||||| |||||    
T  11344402 atttctataacaaaagataaaagaaagtcaaattgttttcata 11344360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 591 - 633
Target Start/End: Complemental strand, 32098426 - 32098384
Alignment:
Q  591 atttctataacaaatgataaaataaagtcaaattgttatcata 633  Q
    |||||||||||||| ||||||||||||||||| |||| |||||    
T  32098426 atttctataacaaaagataaaataaagtcaaagtgttttcata 32098384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 591 - 624
Target Start/End: Original strand, 31461390 - 31461423
Alignment:
Q  591 atttctataacaaatgataaaataaagtcaaatt 624  Q
    |||||||||||||| |||||||||||||||||||    
T  31461390 atttctataacaaaagataaaataaagtcaaatt 31461423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 591 - 635
Target Start/End: Original strand, 27528 - 27572
Alignment:
Q  591 atttctataacaaatgataaaataaagtcaaattgttatcatata 635  Q
    |||||||||||| | |||||||||||||||||||||| |||||||    
T  27528 atttctataacagaagataaaataaagtcaaattgttttcatata 27572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 592 - 624
Target Start/End: Original strand, 8062268 - 8062300
Alignment:
Q  592 tttctataacaaatgataaaataaagtcaaatt 624  Q
    |||||||||||||||||||||||||||||||||    
T  8062268 tttctataacaaatgataaaataaagtcaaatt 8062300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 591 - 627
Target Start/End: Original strand, 14482154 - 14482190
Alignment:
Q  591 atttctataacaaatgataaaataaagtcaaattgtt 627  Q
    |||||||||||||| ||||||||||||||||||||||    
T  14482154 atttctataacaaaagataaaataaagtcaaattgtt 14482190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 589 - 627
Target Start/End: Original strand, 10437835 - 10437873
Alignment:
Q  589 taatttctataacaaatgataaaataaagtcaaattgtt 627  Q
    |||||||||||||||| ||||||||||||||||| ||||    
T  10437835 taatttctataacaaaagataaaataaagtcaaactgtt 10437873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 532 - 578
Target Start/End: Original strand, 34563138 - 34563184
Alignment:
Q  532 ataaacaacttaattaaatgcctatagcgtaagcatttatcatataa 578  Q
    |||||||||||||||||| || |||||| ||| ||||||||||||||    
T  34563138 ataaacaacttaattaaacgcttatagcataaacatttatcatataa 34563184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 606 - 635
Target Start/End: Complemental strand, 787209 - 787180
Alignment:
Q  606 gataaaataaagtcaaattgttatcatata 635  Q
    ||||||||||||||||||||||||||||||    
T  787209 gataaaataaagtcaaattgttatcatata 787180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 590 - 627
Target Start/End: Complemental strand, 3537150 - 3537113
Alignment:
Q  590 aatttctataacaaatgataaaataaagtcaaattgtt 627  Q
    |||||||||| |||| ||||||||||||||||||||||    
T  3537150 aatttctatagcaaaagataaaataaagtcaaattgtt 3537113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 591 - 632
Target Start/End: Original strand, 29699206 - 29699247
Alignment:
Q  591 atttctataacaaatgataaaataaagtcaaattgttatcat 632  Q
    |||||||||||||| ||||||||||||||||| |||| ||||    
T  29699206 atttctataacaaaagataaaataaagtcaaaatgttgtcat 29699247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 591 - 632
Target Start/End: Original strand, 42597353 - 42597394
Alignment:
Q  591 atttctataacaaatgataaaataaagtcaaattgttatcat 632  Q
    |||||||||||||| ||||||||||||| |||||||| ||||    
T  42597353 atttctataacaaaagataaaataaagtaaaattgttttcat 42597394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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