View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19675_low_71 (Length: 248)
Name: NF19675_low_71
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19675_low_71 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 9470799 - 9470568
Alignment:
| Q |
1 |
aataacatcacatacaaatggaattcgcccgtacaaatacgggaacaaccaaaaatatcattcacagtacagtagcattatactatatctaattcatatg |
100 |
Q |
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| T |
9470799 |
aataacatcacatacaaattgaattcgcccgtacaaatacgggaacaaccaaaaatatcattcacagtacagtagcattatactatatctaattcatatg |
9470700 |
T |
|
| Q |
101 |
aatctcaggtcagcaacaagtttagttatgtacatagcaacaagttttcaaggccatttcgtgaatgtgtatagatagatagatagaaatcagtaatttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9470699 |
aatctcaggtcagcaacaagtttagttatgtacatagcaacaagttttcaaggccatttcgtgaatgtgtatagatagatagatagaaatcagtaatttt |
9470600 |
T |
|
| Q |
201 |
ccctaagtgcaatttcaattctgtgaatgata |
232 |
Q |
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|||||||||||||||||||||| ||||||||| |
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| T |
9470599 |
ccctaagtgcaatttcaattctatgaatgata |
9470568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 53692925 - 53692821
Alignment:
| Q |
4 |
aacatcacatacaaatggaattcgcccgtacaaatacgggaacaaccaaaaatatcattcacagtacagtagcattatactatatctaattcatatgaat |
103 |
Q |
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||||||||| |||||| ||||||||| |||||||||| ||||||||||||| ||| ||| |||||||||||||||||||||||||||||| |||| |
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| T |
53692925 |
aacatcacacacaaattgaattcgcctgtacaaatacaggaacaaccaaaagaatccttc-----acagtagcattatactatatctaattcataagaat |
53692831 |
T |
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| Q |
104 |
ctcaggtcag |
113 |
Q |
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|||||||||| |
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| T |
53692830 |
ctcaggtcag |
53692821 |
T |
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