View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19675_low_76 (Length: 239)
Name: NF19675_low_76
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19675_low_76 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 1395707 - 1395926
Alignment:
| Q |
19 |
ttcttgacggcagattttcgtctttacaaattgcaccgatggggggaaacatgtgttcatgtattaataatgaagcaaaataattcttcagttatttttt |
118 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1395707 |
ttcttgacggcagactttcgtctttacgaattgcaccgatgggg-gaaacatgtgttcatgtattaataatgaagcaaaataattcttcagttatttttt |
1395805 |
T |
|
| Q |
119 |
cgttgcgtttgaagattagcatccacaatttgttaaattaaataggtacttatggctccgggtttcaggcgtccctttgcatgcttggacttctgaattc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1395806 |
cgttgcgtttgaagattagcatccacaatttgttaaattaaataggtacttatggctccgggtttcaggcgtccctttgcatgcttggacttctgaattc |
1395905 |
T |
|
| Q |
219 |
ttcaacaaggtgttgttagct |
239 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
1395906 |
ttcaacaaggtgttgttagct |
1395926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University