View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19675_low_77 (Length: 238)
Name: NF19675_low_77
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19675_low_77 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 44226290 - 44226065
Alignment:
| Q |
1 |
ttaattatttttgggatccaacagacatgctatccgagctttctagaagagagaaggcagcaaacattaagcctgacccagatattgatgtctacatgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44226290 |
ttaattatttttgggatccaacagacatgctatccgagctttctagaagagagaaggcagcaaacattaagcctgacccagatattgatgtctacatgaa |
44226191 |
T |
|
| Q |
101 |
ggtatgcattaaataagctattatcaatcaatatc-gtaa----atagtaattggatatactatactatctttgcatctctaattttattttgatataac |
195 |
Q |
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||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44226190 |
ggtatgcattaaataagctattatcaatcaatatcggtaatggtatagtaatt-gatatactatactatctttgcatctctaattttattttgatataac |
44226092 |
T |
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| Q |
196 |
aggcaattgcaactgaaggtcaggagt |
222 |
Q |
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| T |
44226091 |
aggcaattgcaactgaaggtcaggagt |
44226065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 20 - 222
Target Start/End: Complemental strand, 44237085 - 44236878
Alignment:
| Q |
20 |
aacagacatgctatccgagctttctagaagagagaaggcagcaaacattaagcctgacccagatattgatgtctacatgaaggtatgcattaaataagct |
119 |
Q |
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| T |
44237085 |
aacagacatgctatccgagctttctagaagagagaaggcagcaaatatcaagcctgacccagatattgatgtctacatgaaggtatgcattaaataagct |
44236986 |
T |
|
| Q |
120 |
attatcaatcaatatc-gtaa----atagtaattggatatactatactatctttgcatctctaattttattttgatataacaggcaattgcaactgaagg |
214 |
Q |
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| T |
44236985 |
attatcaatcaatatcggtaatggtatagtaattggatatactatactatctttgcatctctaattttattttgatataacaggcaattgcaactgaagg |
44236886 |
T |
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| Q |
215 |
tcaggagt |
222 |
Q |
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|||||||| |
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| T |
44236885 |
tcaggagt |
44236878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 8 - 220
Target Start/End: Complemental strand, 44214117 - 44213919
Alignment:
| Q |
8 |
tttttgggatccaacagacatgctatccgagctttctagaagagagaaggcagcaaacattaagcctgacccagatattgatgtctacatgaaggtatgc |
107 |
Q |
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|||||| |||||| ||||||||||||| |||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||| | |
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| T |
44214117 |
tttttgtgatcca-cagacatgctatctgagctttctagaagagagaaggtagcaaatatcaagcctgacccagatattgatgtctacatgaaggtatac |
44214019 |
T |
|
| Q |
108 |
attaaataagctattatcaatcaatatcgtaaatagtaattggatatactatactatctttgcatctctaattttattttgatataacaggcaattgcaa |
207 |
Q |
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| T |
44214018 |
attaaataagataatatc-------------aatagtaattagatatactatactgtatttgcatatctaactgtattttaatataacaggcaattgcaa |
44213932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 36 - 103
Target Start/End: Original strand, 2883502 - 2883569
Alignment:
| Q |
36 |
gagctttctagaagagagaaggcagcaaacattaagcctgacccagatattgatgtctacatgaaggt |
103 |
Q |
| |
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| T |
2883502 |
gagctgtctagaagagaaaaggaagcaaatattaagccagacccagatgttgatgtcttcatgaaggt |
2883569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 2901446 - 2901384
Alignment:
| Q |
42 |
tctagaagagagaaggcagcaaacattaagcctgacccagatattgatgtctacatgaaggta |
104 |
Q |
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| T |
2901446 |
tctagaagagaaaaggaagcaaagattaagccagacccagatattgatgtctttatgaaggta |
2901384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 103
Target Start/End: Original strand, 2873780 - 2873808
Alignment:
| Q |
75 |
gacccagatattgatgtctacatgaaggt |
103 |
Q |
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| T |
2873780 |
gacccagatattgatgtctacatgaaggt |
2873808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 39334432 - 39334476
Alignment:
| Q |
60 |
gcaaacattaagcctgacccagatattgatgtctacatgaaggta |
104 |
Q |
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| T |
39334432 |
gcaaatatcaagcctgatccagatattgatgtgtacatgaaggta |
39334476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 39568172 - 39568128
Alignment:
| Q |
60 |
gcaaacattaagcctgacccagatattgatgtctacatgaaggta |
104 |
Q |
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||||| || |||||||| |||||||||||||| |||||||||||| |
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| T |
39568172 |
gcaaatatcaagcctgatccagatattgatgtgtacatgaaggta |
39568128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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