View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19675_low_79 (Length: 238)
Name: NF19675_low_79
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19675_low_79 |
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Alignment Details
Target: chr5 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 19242921 - 19243083
Alignment:
| Q |
1 |
cttgtggcttaaaactttgatgttagaaataaagataagaagcgaagagtctatgacgccctattgctcgtggcaggagaaatcataattaggcaagatt |
100 |
Q |
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| T |
19242921 |
cttgtggcttaaaactttgatgttagaaataaagataagaagcgaagagtctatgacgccctattgctcgtggcaggagaaatcaaaattagacaagatt |
19243020 |
T |
|
| Q |
101 |
tcattttctcagagcatgaataaaccttaaacacaattttatgtttggaccttaattatactc |
163 |
Q |
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| T |
19243021 |
tcattttctcagagcatgaataagccttaaacacaattttatgtttggaccttaattatactc |
19243083 |
T |
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Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 35922857 - 35922720
Alignment:
| Q |
1 |
cttgtggcttaaaactttgatgttagaaataaagataagaagcgaagagtctatgacgccctattgct-----cgtggcaggagaaatcataattaggca |
95 |
Q |
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|||||||||| ||| ||||||||||||||| ||||||||||| |||||||||||||||| |||||||| | ||||||||||| ||||| |||| || |
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| T |
35922857 |
cttgtggcttgaaaatttgatgttagaaatgaagataagaagagaagagtctatgacgcactattgctcatgacatggcaggagaattcatatttagaca |
35922758 |
T |
|
| Q |
96 |
agatttcattttctcagagcatgaataaaccttaaaca |
133 |
Q |
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|||||||||||||||| || |||||||| ||||||||| |
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| T |
35922757 |
agatttcattttctcatagtatgaataagccttaaaca |
35922720 |
T |
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