View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19675_low_80 (Length: 237)
Name: NF19675_low_80
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19675_low_80 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 19242925 - 19242704
Alignment:
| Q |
1 |
acaaggcgtgaaaagccgagaacaggcacatgcgtgacaggagggaaggggtgaaattgttgatatggggactcaagttagagctttccatccttatgat |
100 |
Q |
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| T |
19242925 |
acaaggcgtgaaaagccgagaacaggcacatgcgtgacaggagggaaggggtgaaattgttggtatggggactcaagttagagctttccatccttatgat |
19242826 |
T |
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| Q |
101 |
agtgatgttgggttctcacaacatgctcataggattttcgttggaaatttgaaggttaacatgtttaatggtgtcggttatgcgattcaggagtttaaat |
200 |
Q |
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| T |
19242825 |
agtgatgttgggttctcgcaacatgctcataggattttcgttggaaatttgaaggttaacatgtttaatggtgtcggttatgcgattcaggagtttaaat |
19242726 |
T |
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| Q |
201 |
tgttgcaaataatttcacttgt |
222 |
Q |
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| T |
19242725 |
tgttgcaaataatttcacttgt |
19242704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 35922853 - 35923076
Alignment:
| Q |
1 |
acaaggcgtgaaaagccgagaacaggcacatgcgtgacaggagggaaggggtgaaattgttgatatgggg---actcaagttagagc-tttccatcctta |
96 |
Q |
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| T |
35922853 |
acaaggcgtgaaaagctgagaaaagt-acatgcatgacagg-gggaaggggtgaaattgttgatatgggggggactcaggttagagcctttccatcctta |
35922950 |
T |
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| Q |
97 |
tgatagtgatgttgggttctcacaacatgctcataggattttcgttggaaatttgaaggttaacatgtttaatggtgtcggttatgcgattcaggagttt |
196 |
Q |
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| T |
35922951 |
tgatggtgatgttgggcactcacaacgtgctcataggatttttgttggaaatttgaaggttaacatgtttaatggtgttggttatgcgattcaggggttt |
35923050 |
T |
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| Q |
197 |
aaattgttgcaaataatttcacttgt |
222 |
Q |
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| T |
35923051 |
aaattgttgcaaataatttcacttgt |
35923076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 43 - 221
Target Start/End: Original strand, 51274600 - 51274778
Alignment:
| Q |
43 |
gggaaggggtgaaattgttgatatggggactcaagttagagctttccatccttatgatagtgatgttgggttctcacaacatgctcataggattttcgtt |
142 |
Q |
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||||||| ||||||||||||||||||||||||||| |||||| | |||||||||||| ||||||||| ||||| ||||| ||||||||| ||||| ||| |
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| T |
51274600 |
gggaaggaatgaaattgttgatatggggactcaagtgagagctattcatccttatgatggtgatgttgtgttcttacaacgtgctcatagaatttttgtt |
51274699 |
T |
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| Q |
143 |
ggaaatttgaaggttaacatgtttaatggtgtcggttatgcgattcaggagtttaaattgttgcaaataatttcacttg |
221 |
Q |
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| T |
51274700 |
ggaaacttgaagactaacgagattgagggtgttggttatgggattcatgggtttcaatcgttgcaaatgatttcacttg |
51274778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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