View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19675_low_81 (Length: 237)

Name: NF19675_low_81
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19675_low_81
NF19675_low_81
[»] chr7 (4 HSPs)
chr7 (1-219)||(6629445-6629663)
chr7 (98-178)||(2392988-2393068)
chr7 (1-112)||(5299089-5299203)
chr7 (104-164)||(11918544-11918604)
[»] chr1 (5 HSPs)
chr1 (57-180)||(4650373-4650496)
chr1 (105-199)||(49087140-49087234)
chr1 (102-199)||(49086798-49086895)
chr1 (98-199)||(23600628-23600728)
chr1 (102-166)||(13798525-13798589)
[»] chr2 (6 HSPs)
chr2 (62-199)||(8941153-8941290)
chr2 (1-199)||(31067588-31067789)
chr2 (101-197)||(8163186-8163282)
chr2 (96-199)||(25867020-25867123)
chr2 (101-197)||(15324880-15324975)
chr2 (106-178)||(28645885-28645957)
[»] chr4 (4 HSPs)
chr4 (1-194)||(19564694-19564891)
chr4 (37-195)||(11865256-11865422)
chr4 (119-188)||(12380413-12380482)
chr4 (96-198)||(9234695-9234797)
[»] chr6 (5 HSPs)
chr6 (101-200)||(1103522-1103621)
chr6 (90-195)||(14450750-14450855)
chr6 (101-195)||(14448695-14448789)
chr6 (89-166)||(11189456-11189533)
chr6 (101-145)||(13553259-13553303)
[»] scaffold0070 (1 HSPs)
scaffold0070 (104-170)||(3539-3605)
[»] scaffold0135 (1 HSPs)
scaffold0135 (96-198)||(40560-40662)
[»] chr5 (2 HSPs)
chr5 (53-135)||(27598580-27598662)
chr5 (1-85)||(24394601-24394688)
[»] chr8 (1 HSPs)
chr8 (102-166)||(14155818-14155882)
[»] chr3 (1 HSPs)
chr3 (102-166)||(42243669-42243733)


Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 6629445 - 6629663
Alignment:
Q  1 gtggatttccttcctgtcttggtagcgtctagatgtagacgttggaccgaattgggttaataaataactcgtgtcatttaatttcaacctttatcttttg 100  Q
    |||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |    
T  6629445 gtggatttccttcctgtcttagtagtgcctagatgtagacgttggaccgaattgggttaacaaataactcgtgtcatttaatttcaacctttatctttag 6629544  T
Q  101 tttgttatttgtgttgtcacgatgttttgacattgtacttgacatttcgcgtgtcttgacatcgtgctcaacttcttttactacgtgccagaatttcaaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6629545 tttgttatttgtgttgtcacgatgttttgacattgtacttgacattccgcgtgtcttgacatcgtgctcaacttcttttactacgtgccagaatttcaaa 6629644  T
Q  201 cataggtttaacttatagt 219  Q
    |||||||||||||||||||    
T  6629645 cataggtttaacttatagt 6629663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 178
Target Start/End: Original strand, 2392988 - 2393068
Alignment:
Q  98 ttgtttgttatttgtgttgtcacgatgttttgacattgtacttgacatttcgcgtgtcttgacatcgtgctcaacttcttt 178  Q
    ||||||||||||||||||||||| |||| ||||| |  | |||||||| |||| |||| |||||||||| ||||| |||||    
T  2392988 ttgtttgttatttgtgttgtcacaatgtcttgacttctttcttgacatctcgcttgtcatgacatcgtgttcaacatcttt 2393068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 5299203 - 5299089
Alignment:
Q  1 gtggatttccttcctgtcttggtagcgtctagatgta---gacgttggaccgaattgggttaataaataactcgtgtcatttaatttcaacctttatctt 97  Q
    |||||||||||||||| |||||||||  |||||| ||   || |||| ||| || ||||||||  ||||||| ||| |||||| ||||| | ||||||||    
T  5299203 gtggatttccttcctggcttggtagcccctagatctaggcgatgttgtaccaaactgggttaacgaataacttgtgccatttactttcagcttttatctt 5299104  T
Q  98 ttgtttgttatttgt 112  Q
    |   |||||||||||    
T  5299103 taagttgttatttgt 5299089  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 164
Target Start/End: Original strand, 11918544 - 11918604
Alignment:
Q  104 gttatttgtgttgtcacgatgttttgacattgtacttgacatttcgcgtgtcttgacatcg 164  Q
    |||||||||||||| ||||||||||||||||| | | |||||| |  ||||| ||||||||    
T  11918544 gttatttgtgttgttacgatgttttgacattgcattcgacattactggtgtcctgacatcg 11918604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 4650373 - 4650496
Alignment:
Q  57 ttaataaataactcgtgtcatttaatttcaacctttatcttttgtttgttatttgtgttgtcacgatgttttgacattgtacttgacatttcgcgtgtct 156  Q
    |||| |||||||| |||||||||| ||| | ||||||||||| ||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  4650373 ttaacaaataacttgtgtcatttacttttagcctttatctttagtttgctatttgtgttgtcacgatgtcttgacattgtactcgacatttcgcgtgtct 4650472  T
Q  157 tgacatcgtgctcaacttctttta 180  Q
    |||||||||||||||| |||||||    
T  4650473 tgacatcgtgctcaacatctttta 4650496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 199
Target Start/End: Original strand, 49087140 - 49087234
Alignment:
Q  105 ttatttgtgttgtcacgatgttttgacattgtacttgacatttcgcgtgtcttgacatcgtgctcaacttcttttactacgtgccagaatttcaa 199  Q
    |||||| ||||| |||||||| |||||||  | || |||||||||| |||| |||||||||||||||| ||||| |||  |||||||||||||||    
T  49087140 ttatttctgttggcacgatgtcttgacatccttctagacatttcgcttgtcgtgacatcgtgctcaacatctttaactgggtgccagaatttcaa 49087234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 102 - 199
Target Start/End: Original strand, 49086798 - 49086895
Alignment:
Q  102 ttgttatttgtgttgtcacgatgttttgacattgtacttgacatttcgcgtgtcttgacatcgtgctcaacttcttttactacgtgccagaatttcaa 199  Q
    ||||||||| ||||| |||||||| |||||||  | || |||||||||| |||| | |||||||||||||| ||||| |||  |||||||||||||||    
T  49086798 ttgttatttctgttgacacgatgtcttgacatctttctagacatttcgcttgtcgttacatcgtgctcaacatctttaactgggtgccagaatttcaa 49086895  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 199
Target Start/End: Original strand, 23600628 - 23600728
Alignment:
Q  98 ttgtttgttatttgtgttgtcacgatgttttgacattgtacttgacatttcgcgtgtcttgacatcgtgctcaacttcttttactacgtgccagaatttc 197  Q
    ||||||||||| |  ||| ||||||||| |||||||  | ||| |||| |||| |||||||||||||||   ||| || |||||||||||||| ||||||    
T  23600628 ttgtttgttatctaggttatcacgatgtcttgacatctttcttaacatctcgcttgtcttgacatcgtgtataacatc-tttactacgtgccaaaatttc 23600726  T
Q  198 aa 199  Q
    ||    
T  23600727 aa 23600728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 13798589 - 13798525
Alignment:
Q  102 ttgttatttgtgttgtcacgatgttttgacattgtacttgacatttcgcgtgtcttgacatcgtg 166  Q
    |||||||||||||| ||||||||| |||||||  | ||||||||  | | |||||||||||||||    
T  13798589 ttgttatttgtgttatcacgatgtcttgacatctttcttgacatcacacttgtcttgacatcgtg 13798525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 62 - 199
Target Start/End: Complemental strand, 8941290 - 8941153
Alignment:
Q  62 aaataactcgtgtcatttaatttcaacctttatcttttgtttgttatttgtgttgtcacgatgttttgacattgtacttgacatttcgcgtgtcttgaca 161  Q
    |||||||| |||  ||||| ||||| | ||||||||| ||||||||||||| ||||||| |||| ||||||||||||| |||||| | ||||||||||||    
T  8941290 aaataacttgtgcaatttactttcagcttttatctttagtttgttatttgtattgtcacaatgtcttgacattgtactcgacattcctcgtgtcttgaca 8941191  T
Q  162 tcgtgctcaacttcttttactacgtgccagaatttcaa 199  Q
    ||||||||| | ||||||||| ||||| ||||||||||    
T  8941190 tcgtgctcagcatcttttactgcgtgctagaatttcaa 8941153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 31067588 - 31067789
Alignment:
Q  1 gtggatttccttcctgtcttggtagcgtctagatgta---gacgttggaccgaattgggttaataaataactcgtgtcatttaatttcaacctttatctt 97  Q
    ||||||||||||||||  ||||||||  | ||| |||   ||||||| ||| || | |||||| |||||||| |||||||||| |||   | |||| |||    
T  31067588 gtggatttccttcctgaattggtagcccccagacgtaggtgacgttgcaccaaactaggttaacaaataacttgtgtcatttactttttgcatttacctt 31067687  T
Q  98 ttgtttgttatttgtgttgtcacgatgttttgacattgtacttgacatttcgcgtgtcttgacatcgtgctcaacttcttttactacgtgccagaatttc 197  Q
      | ||||||||| |||||||||||||||||||||||||| | || ||| |  |||||||||||||||| ||||| ||||||||| ||||||||||||||    
T  31067688 aagattgttatttatgttgtcacgatgttttgacattgtattcgatattcctagtgtcttgacatcgtgttcaacatcttttactgcgtgccagaatttc 31067787  T
Q  198 aa 199  Q
    ||    
T  31067788 aa 31067789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 101 - 197
Target Start/End: Original strand, 8163186 - 8163282
Alignment:
Q  101 tttgttatttgtgttgtcacgatgttttgacattgtacttgacatttcgcgtgtcttgacatcgtgctcaacttcttttactacgtgccagaatttc 197  Q
    |||||||||||||||| || ||||| |||||||||| || |||||  | ||||||||||||||||||| ||| |||||||||| |||||||||||||    
T  8163186 tttgttatttgtgttgccaggatgtcttgacattgtgctcgacataccacgtgtcttgacatcgtgctaaacatcttttactatgtgccagaatttc 8163282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 96 - 199
Target Start/End: Complemental strand, 25867123 - 25867020
Alignment:
Q  96 ttttgtttgttatttgtgttgtcacgatgttttgacattgtacttgacatttcgcgtgtcttgacatcgtgctcaacttcttttactacgtgccagaatt 195  Q
    |||| ||||||||||||||||||| |||||||||||||| | || |||||| | ||||| || ||||||| |||||| ||||||||| ||||||| ||||    
T  25867123 ttttatttgttatttgtgttgtcatgatgttttgacattattctcgacattcctcgtgttttaacatcgtactcaacatcttttactgcgtgccataatt 25867024  T
Q  196 tcaa 199  Q
    ||||    
T  25867023 tcaa 25867020  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 197
Target Start/End: Complemental strand, 15324975 - 15324880
Alignment:
Q  101 tttgttatttgtgttgtcacgatgttttgacattgtacttgacatttcgcgtgtcttgacatcgtgctcaacttcttttactacgtgccagaatttc 197  Q
    ||||||| ||||||||||||| ||| || |||||| | ||||||||||  ||||||||||||||||  | || ||||||||| |||| |||||||||    
T  15324975 tttgttaattgtgttgtcacggtgtcttaacattgcatttgacatttctggtgtcttgacatcgtg-actacatcttttactgcgtgtcagaatttc 15324880  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 178
Target Start/End: Original strand, 28645885 - 28645957
Alignment:
Q  106 tatttgtgttgtcacgatgttttgacattgtacttgacatttcgcgtgtcttgacatcgtgctcaacttcttt 178  Q
    |||||||||||||||||| | || || | ||||||||||||| |  |||||||||||| | |||||| |||||    
T  28645885 tatttgtgttgtcacgatatcttaacttcgtacttgacattttgtttgtcttgacatcattctcaacatcttt 28645957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 19564891 - 19564694
Alignment:
Q  1 gtggatttccttcctgtcttggtagcgtctagatgtaga---cgttggaccgaattgggttaataaataactcgtgtcatttaatttcaacctttatctt 97  Q
    ||||||||||||| || ||||||| | ||||||  ||||   ||||| ||| || |||||||| ||||||| |||| | |||| ||||  ||||||||||    
T  19564891 gtggatttccttcttggcttggtaacctctagacttagatgacgttgcaccaaactgggttaacaaataacccgtgccttttactttctgcctttatctt 19564792  T
Q  98 ttgtttgttatttgtgttgtcacgatgttttgacattgtacttgacatttcgcgtgtcttgacatcgtgctcaacttct-tttactacgtgccagaat 194  Q
    |   ||||||||||||||||| |||||| |||||||  | ||||||||| ||||||||||||||||||||||||  ||| ||| ||||||||||||||    
T  19564791 taagttgttatttgtgttgtctcgatgtcttgacatcattcttgacattacgcgtgtcttgacatcgtgctcaaaatctctttcctacgtgccagaat 19564694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 37 - 195
Target Start/End: Original strand, 11865256 - 11865422
Alignment:
Q  37 agacgttggaccgaattgggttaataaataactcgtgtcatttaatttcaacctttatcttt-------tgtttgttattt-gtgttgtcacgatgtttt 128  Q
    |||||||| |||||| |||||||| |||||||| ||| | |||| |||   |||||||||||       | |||||||||| ||||||||||||||| ||    
T  11865256 agacgttgcaccgaactgggttaacaaataacttgtgccttttactttttgcctttatctttaagttgttatttgttattttgtgttgtcacgatgtctt 11865355  T
Q  129 gacattgtacttgacatttcgcgtgtcttgacatcgtgctcaacttcttttactacgtgccagaatt 195  Q
    |||||  |||||||||||  |||||||||||||| |||| |||| |||||||||  |||| ||||||    
T  11865356 gacatcttacttgacattctgcgtgtcttgacattgtgcccaacatcttttactgtgtgctagaatt 11865422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 12380482 - 12380413
Alignment:
Q  119 acgatgttttgacattgtacttgacatttcgcgtgtcttgacatcgtgctcaacttcttttactacgtgc 188  Q
    ||||||| |||||||||| || || ||| | ||||||||||||||||||||||| ||||||||| |||||    
T  12380482 acgatgtcttgacattgttctcgatattcctcgtgtcttgacatcgtgctcaacatcttttactgcgtgc 12380413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 198
Target Start/End: Complemental strand, 9234797 - 9234695
Alignment:
Q  96 ttttgtttgttatttgtgttgtcacgatgttttgacattgtacttgacatttcgcgtgtcttgacatcgtgctcaacttcttttactacgtgccagaatt 195  Q
    ||||||||||||| ||||||||||| |||| |||||||| | ||| |||| |||| |||||| | || |||   ||| | |||||||  |||||||||||    
T  9234797 ttttgtttgttatctgtgttgtcacaatgtcttgacattattcttaacatctcgcttgtcttaatattgtgtataacattttttactgagtgccagaatt 9234698  T
Q  196 tca 198  Q
    |||    
T  9234697 tca 9234695  T

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Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 101 - 200
Target Start/End: Original strand, 1103522 - 1103621
Alignment:
Q  101 tttgttatttgtgttgtcacgatgttttgacattgtacttgacatttcgcgtgtcttgacatcgtgctcaacttcttttactacgtgccagaatttcaaa 200  Q
    ||||||||||||||||||||||||| |||||||||| || ||||||  |||||||||||||||||||| ||| ||||||| | ||||  |||||||||||    
T  1103522 tttgttatttgtgttgtcacgatgtcttgacattgtgctcgacattgtgcgtgtcttgacatcgtgcttaacatcttttagtgcgtgatagaatttcaaa 1103621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 90 - 195
Target Start/End: Original strand, 14450750 - 14450855
Alignment:
Q  90 tttatcttttgtttgttatttgtgttgtcacgatgttttgacattgtacttgacatttcgcgtgtcttgacatcgtgctcaacttcttttactacgtgcc 189  Q
    |||||||||  ||||||||||||||||||| ||||| |||| ||| | ||  ||||||| ||||| ||||||||||||||||| |||||||||||||| |    
T  14450750 tttatctttaatttgttatttgtgttgtcaggatgtcttgatattattctcaacatttctcgtgttttgacatcgtgctcaacatcttttactacgtggc 14450849  T
Q  190 agaatt 195  Q
    ||||||    
T  14450850 agaatt 14450855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 101 - 195
Target Start/End: Original strand, 14448695 - 14448789
Alignment:
Q  101 tttgttatttgtgttgtcacgatgttttgacattgtacttgacatttcgcgtgtcttgacatcgtgctcaacttcttttactacgtgccagaatt 195  Q
    |||| |||||||||||||| ||||| |||||||||| ||  ||||||| ||||| |||||||||| |||||| |||||||||||||| |||||||    
T  14448695 tttgctatttgtgttgtcaagatgtcttgacattgttctcaacatttctcgtgttttgacatcgtactcaacatcttttactacgtggcagaatt 14448789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 166
Target Start/End: Original strand, 11189456 - 11189533
Alignment:
Q  89 ctttatcttttgtttgttatttgtgttgtcacgatgttttgacattgtacttgacatttcgcgtgtcttgacatcgtg 166  Q
    |||||||||| ||||||||| |||||||||||||||| | |||||  | ||||||||| |   |||||||||||||||    
T  11189456 ctttatctttagtttgttatgtgtgttgtcacgatgtctcgacatcattcttgacattacaaatgtcttgacatcgtg 11189533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 13553303 - 13553259
Alignment:
Q  101 tttgttatttgtgttgtcacgatgttttgacattgtacttgacat 145  Q
    |||| ||||||||||||||| ||||||||||||  ||||||||||    
T  13553303 tttgatatttgtgttgtcacaatgttttgacatcttacttgacat 13553259  T

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Target: scaffold0070 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 104 - 170
Target Start/End: Complemental strand, 3605 - 3539
Alignment:
Q  104 gttatttgtgttgtcacgatgttttgacattgtacttgacatttcgcgtgtcttgacatcgtgctca 170  Q
    |||||||||||||||||||||| |||||||||| || |||||| |||||||||||||||||||||||    
T  3605 gttatttgtgttgtcacgatgtcttgacattgtgctggacattccgcgtgtcttgacatcgtgctca 3539  T

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Target: scaffold0135 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 96 - 198
Target Start/End: Complemental strand, 40662 - 40560
Alignment:
Q  96 ttttgtttgttatttgtgttgtcacgatgttttgacattgtacttgacatttcgcgtgtcttgacatcgtgctcaacttcttttactacgtgccagaatt 195  Q
    ||||||||||||| ||||||||||| |||| |||||||| | ||| |||| |||| |||||| ||||||||   ||| | |||||||  |||||||||||    
T  40662 ttttgtttgttatctgtgttgtcacaatgtcttgacattattcttaacatctcgcttgtcttaacatcgtgtataacattttttactgagtgccagaatt 40563  T
Q  196 tca 198  Q
    |||    
T  40562 tca 40560  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 135
Target Start/End: Complemental strand, 27598662 - 27598580
Alignment:
Q  53 tgggttaataaataactcgtgtcatttaatttcaacctttatcttttgtttgttatttgtgttgtcacgatgttttgacattg 135  Q
    |||||||| |||||||  |||||||||  ||||  | ||||| |||  |||||||||||||||||| |||||| |||||||||    
T  27598662 tgggttaacaaataacgtgtgtcatttgctttcggcttttatttttaatttgttatttgtgttgtctcgatgtcttgacattg 27598580  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 24394688 - 24394601
Alignment:
Q  1 gtggatttccttcctgtcttggtagcgtctagatgta---gacgttggaccgaattgggttaataaataactcgtgtcatttaatttc 85  Q
    |||||||||||||||| |||||  ||  | |||||||   ||||||| |||||| |||||||| ||||||||||| ||||||| ||||    
T  24394688 gtggatttccttcctggcttggatgcccccagatgtaggtgacgttgcaccgaaatgggttaacaaataactcgtatcatttactttc 24394601  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 14155882 - 14155818
Alignment:
Q  102 ttgttatttgtgttgtcacgatgttttgacattgtacttgacatttcgcgtgtcttgacatcgtg 166  Q
    |||||||||||||| ||||||||| |||||||  | ||||||||  | | |||||||||||||||    
T  14155882 ttgttatttgtgttatcacgatgtcttgacatctttcttgacatcacacttgtcttgacatcgtg 14155818  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 42243733 - 42243669
Alignment:
Q  102 ttgttatttgtgttgtcacgatgttttgacattgtacttgacatttcgcgtgtcttgacatcgtg 166  Q
    |||||||||||||| ||||||||| |||||||  | ||||||||  | | |||||||||||||||    
T  42243733 ttgttatttgtgttatcacgatgtcttgacatctttcttgacatcacacttgtcttgacatcgtg 42243669  T

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