View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19675_low_82 (Length: 236)
Name: NF19675_low_82
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19675_low_82 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 36947673 - 36947450
Alignment:
| Q |
1 |
caatattacatctgtg--tcataaataaataaaagaaagaaagaagacatgttatgttatattatacacttcattgcactttttaatttttctattctaa |
98 |
Q |
| |
|
||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
36947673 |
caatattacatctatgagtcatgaataaataaaagaaagaaagaagacatgttatgttatattatacgcttcattgcactttttaatttttctattctaa |
36947574 |
T |
|
| Q |
99 |
agataaatatgataataactataaaacaaacatacctttttgaaacgtgaattatttgtgagtggaccaacagtgtcaagagccgtttcgttattctggt |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36947573 |
agataaatatgataataactataaaacaaacatacctttttgaaacgtgaattatttgtgagtggaccaacagtgtcaagagccgtttcgttattctggt |
36947474 |
T |
|
| Q |
199 |
taacaatatctagatgcacttttt |
222 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
36947473 |
taacaatatctagatgcacttttt |
36947450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University