View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19675_low_87 (Length: 222)
Name: NF19675_low_87
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19675_low_87 |
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Alignment Details
Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 51098794 - 51098856
Alignment:
| Q |
1 |
caagttgcagagaaactgatcagtagtgtatactgtataccagaccaaatgtattcatgcaataat |
66 |
Q |
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| T |
51098794 |
caagttgtagagaaact---cagtggtgtatactgtataccagaccaaatgtattcatgcaataat |
51098856 |
T |
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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 214
Target Start/End: Original strand, 51098897 - 51098971
Alignment:
| Q |
140 |
gttcaagaggaaacagggaacaaattttgttctcaaatattggggatgttgttgtattatagcttttgtatttat |
214 |
Q |
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| T |
51098897 |
gttcaagtggaaacagtgaacaatttgtgtcctcaaatatgggagatgttgttatattatagcttttgaatttat |
51098971 |
T |
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