View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19675_low_90 (Length: 218)

Name: NF19675_low_90
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19675_low_90
NF19675_low_90
[»] chr3 (29 HSPs)
chr3 (14-202)||(10184140-10184328)
chr3 (14-202)||(9838759-9838947)
chr3 (14-202)||(9849637-9849825)
chr3 (14-202)||(10663424-10663612)
chr3 (14-202)||(10031901-10032089)
chr3 (14-202)||(10260596-10260784)
chr3 (14-202)||(10580499-10580687)
chr3 (14-202)||(10126826-10127014)
chr3 (14-202)||(11769132-11769320)
chr3 (14-202)||(10088688-10088876)
chr3 (14-202)||(10195571-10195759)
chr3 (14-202)||(10363781-10363969)
chr3 (14-202)||(10434027-10434215)
chr3 (14-202)||(10375828-10376016)
chr3 (14-202)||(10077167-10077355)
chr3 (14-202)||(10889204-10889392)
chr3 (14-202)||(11131009-11131197)
chr3 (14-202)||(11160000-11160188)
chr3 (14-202)||(11148837-11149025)
chr3 (12-145)||(13160935-13161068)
chr3 (12-145)||(13170986-13171119)
chr3 (12-145)||(13332859-13332992)
chr3 (12-145)||(13344044-13344177)
chr3 (14-202)||(8861184-8861372)
chr3 (53-156)||(10527281-10527384)
chr3 (14-145)||(13289620-13289751)
chr3 (17-156)||(10517408-10517547)
chr3 (53-156)||(11782025-11782128)
chr3 (81-156)||(10500500-10500575)
[»] chr2 (1 HSPs)
chr2 (14-202)||(26906795-26906983)
[»] scaffold0002 (2 HSPs)
scaffold0002 (12-145)||(135869-136002)
scaffold0002 (12-145)||(145920-146053)
[»] chr8 (2 HSPs)
chr8 (53-156)||(11484961-11485064)
chr8 (57-156)||(44957735-44957834)
[»] chr4 (3 HSPs)
chr4 (53-156)||(17852966-17853069)
chr4 (54-100)||(7128998-7129044)
chr4 (56-100)||(7482094-7482138)
[»] chr6 (1 HSPs)
chr6 (53-143)||(31679755-31679845)


Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 10184328 - 10184140
Alignment:
Q  14 aatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcct 113  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  10184328 aatatcaaaatcctcggacacacaagcccacgccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgagcaagggtagtttttcct 10184229  T
Q  114 aaacctcccatgcccaaaattgcaacaacacctatattattatgggttgtatctctctgtgacagcaacatgttcattattgtctcttt 202  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10184228 aaacctcccatgcccaaaattgcaacaacacctatagcattatgggttgtgtctctctgtgacagcaacatgttcattattgtctcttt 10184140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 9838947 - 9838759
Alignment:
Q  14 aatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcct 113  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9838947 aatatcaaaatcctcagacacacaagcccacgccctcatatcaaaatgttgttgaacttcttcatcattgtaaacaagttgggcaagggtagtttttcct 9838848  T
Q  114 aaacctcccatgcccaaaattgcaacaacacctatattattatgggttgtatctctctgtgacagcaacatgttcattattgtctcttt 202  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || || ||||||||||||||||||||||||||    
T  9838847 aaacctcccatgcccaaaattgcaacaacacctatattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctcttt 9838759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 9849825 - 9849637
Alignment:
Q  14 aatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcct 113  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9849825 aatatcaaaatcctcagacacacaagcccacgccctcatatcaaaatgttgttgaacttcttcatcattgtaaacaagttgggcaagggtagtttttcct 9849726  T
Q  114 aaacctcccatgcccaaaattgcaacaacacctatattattatgggttgtatctctctgtgacagcaacatgttcattattgtctcttt 202  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || || ||||||||||||||||||||||||||    
T  9849725 aaacctcccatgcccaaaattgcaacaacacctatattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctcttt 9849637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 10663612 - 10663424
Alignment:
Q  14 aatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcct 113  Q
    ||||||||||||||||||||||||| ||||  || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10663612 aatatcaaaatcctcagacacacaaacccatgccttcaaatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcct 10663513  T
Q  114 aaacctcccatgcccaaaattgcaacaacacctatattattatgggttgtatctctctgtgacagcaacatgttcattattgtctcttt 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  10663512 aaacctcccatgcccaaaattgcaacaacacctatattattatgggttgtgtctctctgtgatagcaacatgttcattattgtctcttt 10663424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 10032089 - 10031901
Alignment:
Q  14 aatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcct 113  Q
    ||||||||||||||||||||||||||||||  || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10032089 aatatcaaaatcctcagacacacaagcccaggccttcaaatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcct 10031990  T
Q  114 aaacctcccatgcccaaaattgcaacaacacctatattattatgggttgtatctctctgtgacagcaacatgttcattattgtctcttt 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||| ||||||||||||||||||||||||||    
T  10031989 aaacctcccatgcccaaaattgcaacaacacctatattattatgggatgcgtctctctgtgatagcaacatgttcattattgtctcttt 10031901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 10260784 - 10260596
Alignment:
Q  14 aatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcct 113  Q
    ||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  10260784 aatatcaaaatcctcagacacacaagcccacgccttcatgtcaaaatgttgttgaacttctttatcattgtaaacaagttgagcaagggtagtttttcct 10260685  T
Q  114 aaacctcccatgcccaaaattgcaacaacacctatattattatgggttgtatctctctgtgacagcaacatgttcattattgtctcttt 202  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||| ||||||||||||||||||||||||||    
T  10260684 aaacctcccatgcccaaaattgcaacaacacctatattattgttggttgtttctctctgtgatagcaacatgttcattattgtctcttt 10260596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 10580687 - 10580499
Alignment:
Q  14 aatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcct 113  Q
    ||||||||||||||||||||||||| ||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10580687 aatatcaaaatcctcagacacacaaacccacgccttcatgtcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcct 10580588  T
Q  114 aaacctcccatgcccaaaattgcaacaacacctatattattatgggttgtatctctctgtgacagcaacatgttcattattgtctcttt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||| ||||||||||||||||||||||||||    
T  10580587 aaacctcccatgcccaaaattgcaacaacacctatattattatggattgtgtttctctgtgatagcaacatgttcattattgtctcttt 10580499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 10127014 - 10126826
Alignment:
Q  14 aatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcct 113  Q
    ||||||||||||||||||||||||| ||||  || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  10127014 aatatcaaaatcctcagacacacaaacccatgccttcaaatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttccc 10126915  T
Q  114 aaacctcccatgcccaaaattgcaacaacacctatattattatgggttgtatctctctgtgacagcaacatgttcattattgtctcttt 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| || ||||||||||||||||||||||||||    
T  10126914 aaacctcccatgcccaaaattgcaacaacacctatattattatgggatgtgtctctctgagatagcaacatgttcattattgtctcttt 10126826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 11769320 - 11769132
Alignment:
Q  14 aatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcct 113  Q
    ||||||||||||||||||||| ||||||||  || ||| |||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  11769320 aatatcaaaatcctcagacacgcaagcccatgccttcaaatcaaaatattgttgaacttctttatcattgtagacaagttgagcaagggtagtttttcct 11769221  T
Q  114 aaacctcccatgcccaaaattgcaacaacacctatattattatgggttgtatctctctgtgacagcaacatgttcattattgtctcttt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||    
T  11769220 aaacctcccatgcccaaaattgcaacaacacctatattattatggattgtgtctctctgtgatagcaacatgttcattattgtctcttt 11769132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 10088876 - 10088688
Alignment:
Q  14 aatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcct 113  Q
    ||||||||||||||||||||||||| ||||  || ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10088876 aatatcaaaatcctcagacacacaaacccatgccttcaaatcaaaatggtgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcct 10088777  T
Q  114 aaacctcccatgcccaaaattgcaacaacacctatattattatgggttgtatctctctgtgacagcaacatgttcattattgtctcttt 202  Q
    |||||||||||||| |||||||||||||||||||||||||| | |||||| ||||||| ||| ||||||||||||||||||||||||||    
T  10088776 aaacctcccatgcctaaaattgcaacaacacctatattattgtcggttgtttctctctttgaaagcaacatgttcattattgtctcttt 10088688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 10195759 - 10195571
Alignment:
Q  14 aatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcct 113  Q
    ||||||||||||||||||||||||| ||||  || ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10195759 aatatcaaaatcctcagacacacaaacccatgccttcaaatcaaaatggtgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcct 10195660  T
Q  114 aaacctcccatgcccaaaattgcaacaacacctatattattatgggttgtatctctctgtgacagcaacatgttcattattgtctcttt 202  Q
    |||||||||||||| |||||||||||||||||||||||||| | |||||| ||||||| ||| ||||||||||||||||||||||||||    
T  10195659 aaacctcccatgcctaaaattgcaacaacacctatattattgtcggttgtttctctctttgaaagcaacatgttcattattgtctcttt 10195571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 10363781 - 10363969
Alignment:
Q  14 aatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcct 113  Q
    |||||||||||||||||| |||||| ||||  || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10363781 aatatcaaaatcctcagagacacaaacccatgccttcaaatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcct 10363880  T
Q  114 aaacctcccatgcccaaaattgcaacaacacctatattattatgggttgtatctctctgtgacagcaacatgttcattattgtctcttt 202  Q
    |||||||||||||| |||||||||||||||||||||||||| | |||||| ||||||| ||| ||||||||||||||||||||||||||    
T  10363881 aaacctcccatgcctaaaattgcaacaacacctatattattgtcggttgtttctctctttgaaagcaacatgttcattattgtctcttt 10363969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 10434027 - 10434215
Alignment:
Q  14 aatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcct 113  Q
    |||||||||||||| |||||||||||||||  || ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10434027 aatatcaaaatcctgagacacacaagcccaggccttcaaatcaaaatggtgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcct 10434126  T
Q  114 aaacctcccatgcccaaaattgcaacaacacctatattattatgggttgtatctctctgtgacagcaacatgttcattattgtctcttt 202  Q
    |||||||||||||| |||||||||||||||||||| |||||||| ||||| | ||||||||| ||||||||||||||||||||||||||    
T  10434127 aaacctcccatgcctaaaattgcaacaacacctatcttattatgagttgtgtttctctgtgatagcaacatgttcattattgtctcttt 10434215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 10375828 - 10376016
Alignment:
Q  14 aatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcct 113  Q
    ||||||||||||||||||||||||||||||  || ||| |||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||    
T  10375828 aatatcaaaatcctcagacacacaagcccatgccttcaaatcaaaatgttgttgaactttttcatcattgtaaacaagttgtgcaagggtagtttttcct 10375927  T
Q  114 aaacctcccatgcccaaaattgcaacaacacctatattattatgggttgtatctctctgtgacagcaacatgttcattattgtctcttt 202  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||| ||| ||| ||| ||||||||||||||||| || |||||    
T  10375928 aaacctcccatgcccaaaattgcaacaacacctatattattatgcgatgtgtctgtctctgatagcaacatgttcattatagtgtcttt 10376016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 10077355 - 10077167
Alignment:
Q  14 aatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcct 113  Q
    ||||||||||||||||||||||||||||||  ||  || ||||||||| | | ||||||  | |||||||||||||||||||||||||||||||||||||    
T  10077355 aatatcaaaatcctcagacacacaagcccatgcctgcaaatcaaaatggtatcgaactttataatcattgtaaacaagttgggcaagggtagtttttcct 10077256  T
Q  114 aaacctcccatgcccaaaattgcaacaacacctatattattatgggttgtatctctctgtgacagcaacatgttcattattgtctcttt 202  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    |  ||  ||| ||||||||||||||||||||||||||    
T  10077255 aaacctcccatgcccaaaattgcaacaacacctatcttattatgggttccgcccatccctgatagcaacatgttcattattgtctcttt 10077167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 10889392 - 10889204
Alignment:
Q  14 aatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcct 113  Q
    |||||||||||||||||| |||||||||||  |  | | |||||| || | |||||||| || |||||||||||||||||| ||||| || ||||| ||     
T  10889392 aatatcaaaatcctcagatacacaagcccatgctttgagatcaaagtgctcttgaactttttcatcattgtaaacaagttgtgcaagtgtcgttttaccg 10889293  T
Q  114 aaacctcccatgcccaaaattgcaacaacacctatattattatgggttgtatctctctgtgacagcaacatgttcattattgtctcttt 202  Q
    | ||||||||| || ||||||||||||||||| ||||| ||||   | ||    |||| ||| ||||||||||||||||||||||||||    
T  10889292 acacctcccatacctaaaattgcaacaacaccgatattgttattcctagtgctgctctctgatagcaacatgttcattattgtctcttt 10889204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 11131009 - 11131197
Alignment:
Q  14 aatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcct 113  Q
    ||||||||||||||| || |||||||||||  |  | | |||||| |||| |||||||| || |||||||||| ||| ||| |||||||| ||||||||     
T  11131009 aatatcaaaatcctccgatacacaagcccatgctttgagatcaaagtgttcttgaactttttcatcattgtaagcaatttgtgcaagggttgtttttccg 11131108  T
Q  114 aaacctcccatgcccaaaattgcaacaacacctatattattatgggttgtatctctctgtgacagcaacatgttcattattgtctcttt 202  Q
    | ||||||||| || ||||||||||||||||| ||||| |||| | | ||    |||| ||| |||||||||||| |||||||||||||    
T  11131109 acacctcccatacctaaaattgcaacaacaccgatattgttattgctagtgctgctctttgatagcaacatgttcgttattgtctcttt 11131197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 11160000 - 11160188
Alignment:
Q  14 aatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcct 113  Q
    |||||||||||||||||| |||||||||||  |  | | ||||||||| | |||||||| || || ||||||||||||||| ||||| || ||||| ||     
T  11160000 aatatcaaaatcctcagatacacaagcccatgctttgaaatcaaaatgatcttgaactttttcattattgtaaacaagttgtgcaagtgtcgttttaccg 11160099  T
Q  114 aaacctcccatgcccaaaattgcaacaacacctatattattatgggttgtatctctctgtgacagcaacatgttcattattgtctcttt 202  Q
    | ||||||||| || |||||||||||||| |||||||| |||| |   ||    |||| ||| ||||||||||||||||||||||||||    
T  11160100 acacctcccatacctaaaattgcaacaacgcctatattgttattgccagtgctactctctgatagcaacatgttcattattgtctcttt 11160188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 11148837 - 11149025
Alignment:
Q  14 aatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcct 113  Q
    ||||||||||||||| || |||||||||||  |  | | |||||| |||| |||||||| || |||||||||| ||| ||| |||||||| ||||||||     
T  11148837 aatatcaaaatcctccgatacacaagcccatgctttgagatcaaagtgttcttgaactttttcatcattgtaagcaatttgtgcaagggttgtttttccg 11148936  T
Q  114 aaacctcccatgcccaaaattgcaacaacacctatattattatgggttgtatctctctgtgacagcaacatgttcattattgtctcttt 202  Q
    | ||||||||| || ||||||||||||||||| ||||| |||| | | ||    |||| ||| |||||||||||| ||||| |||||||    
T  11148937 acacctcccatacctaaaattgcaacaacaccgatattgttattgctagtgctgctctttgatagcaacatgttcgttattatctcttt 11149025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 12 - 145
Target Start/End: Complemental strand, 13161068 - 13160935
Alignment:
Q  12 agaatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttc 111  Q
    |||||||| |||||||| || |||||| |||| ||  ||| ||||||||| | |||||||||||||||||| |||| |||||||||||| || ||||| |    
T  13161068 agaatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcttgaacttctttatcattataaagaagttgggcaagagtggttttgc 13160969  T
Q  112 ctaaacctcccatgcccaaaattgcaacaacacc 145  Q
    | | ||| ||||| |||||||||||||| |||||    
T  13160968 caacaccgcccatacccaaaattgcaaccacacc 13160935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 12 - 145
Target Start/End: Complemental strand, 13171119 - 13170986
Alignment:
Q  12 agaatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttc 111  Q
    |||||||| |||||||| || |||||| |||| ||  ||| ||||||||| | |||||||||||||||||| |||| |||||||||||| || ||||| |    
T  13171119 agaatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcttgaacttctttatcattataaagaagttgggcaagagtggttttgc 13171020  T
Q  112 ctaaacctcccatgcccaaaattgcaacaacacc 145  Q
    | | ||| ||||| |||||||||||||| |||||    
T  13171019 caacaccgcccatacccaaaattgcaaccacacc 13170986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 12 - 145
Target Start/End: Complemental strand, 13332992 - 13332859
Alignment:
Q  12 agaatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttc 111  Q
    |||||||| |||||||| || |||||| |||| ||  ||| ||||||||| | |||||||||||||||||| |||| |||||||||||| || ||||| |    
T  13332992 agaatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcttgaacttctttatcattataaagaagttgggcaagagtggttttgc 13332893  T
Q  112 ctaaacctcccatgcccaaaattgcaacaacacc 145  Q
    | | ||| ||||| |||||||||||||| |||||    
T  13332892 caacaccgcccatacccaaaattgcaaccacacc 13332859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 12 - 145
Target Start/End: Complemental strand, 13344177 - 13344044
Alignment:
Q  12 agaatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttc 111  Q
    |||||||| |||||||| || |||||| |||| ||  ||| ||||||||| | |||||||||||||||||| |||| |||||||||||| || ||||| |    
T  13344177 agaatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcttgaacttctttatcattataaagaagttgggcaagagtggttttgc 13344078  T
Q  112 ctaaacctcccatgcccaaaattgcaacaacacc 145  Q
    | | ||| ||||| |||||||||||||| |||||    
T  13344077 caacaccgcccatacccaaaattgcaaccacacc 13344044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 8861372 - 8861184
Alignment:
Q  14 aatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcct 113  Q
    ||||||||||||||| || |||||||||||  |  | | |||||| || | |||||||| || |||||||||||||||||| ||||| || ||||| ||     
T  8861372 aatatcaaaatcctctgatacacaagcccatgctttgagatcaaagtgctcttgaactttttcatcattgtaaacaagttgtgcaagtgtcgttttaccg 8861273  T
Q  114 aaacctcccatgcccaaaattgcaacaacacctatattattatgggttgtatctctctgtgacagcaacatgttcattattgtctcttt 202  Q
    | ||||||||| || ||||||||||||||||| ||||| ||||   | ||    |||| ||| |||||||||||||||| |||||||||    
T  8861272 acacctcccatacctaaaattgcaacaacaccgatattgttattcctagtgctgctctctgatagcaacatgttcattactgtctcttt 8861184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 53 - 156
Target Start/End: Complemental strand, 10527384 - 10527281
Alignment:
Q  53 atcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaacacctatatta 152  Q
    ||||||||| |||| ||| | || |||||||||||||||||| |||||||| ||||| || | ||||||||| ||||| |||||||||||||||| ||||    
T  10527384 atcaaaatggtgttcaaccttttcatcattgtaaacaagttgtgcaagggttgttttaccgacacctcccatacccaagattgcaacaacacctaaatta 10527285  T
Q  153 ttat 156  Q
    ||||    
T  10527284 ttat 10527281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 14 - 145
Target Start/End: Complemental strand, 13289751 - 13289620
Alignment:
Q  14 aatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcct 113  Q
    |||||| |||||||| || |||||| |||| ||  ||| ||||||||| | |||||||||||||||||| |||| |||||||||||| || ||||| ||     
T  13289751 aatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcttgaacttctttatcattataaagaagttgggcaagagtggttttgcca 13289652  T
Q  114 aaacctcccatgcccaaaattgcaacaacacc 145  Q
    | ||| ||||| ||||||||||| || |||||    
T  13289651 acaccgcccatacccaaaattgcgaccacacc 13289620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 156
Target Start/End: Complemental strand, 10517547 - 10517408
Alignment:
Q  17 atcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcctaaa 116  Q
    ||||||||||||||| |||||| ||||  |  | | |||||||||||||| ||||| |  ||||||||||||||  || |||||||| ||||| || |      
T  10517547 atcaaaatcctcagatacacaaacccaggctttgaaatcaaaatgttgttcaacttttgcatcattgtaaacaaactgtgcaagggtcgttttaccgacg 10517448  T
Q  117 cctcccatgcccaaaattgcaacaacacctatattattat 156  Q
    |||||||| |||| ||||||| ||||||||| ||||||||    
T  10517447 cctcccatacccacaattgcagcaacacctaaattattat 10517408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 53 - 156
Target Start/End: Original strand, 11782025 - 11782128
Alignment:
Q  53 atcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaacacctatatta 152  Q
    |||||||||||||| |||||    ||||||||||||||| || |||||||| ||||| || |  |||||||| ||||||||||| |||||||||| ||||    
T  11782025 atcaaaatgttgttcaactttcacatcattgtaaacaagctgtgcaagggtcgttttaccgacgcctcccatacccaaaattgcgacaacacctaaatta 11782124  T
Q  153 ttat 156  Q
    ||||    
T  11782125 ttat 11782128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 81 - 156
Target Start/End: Complemental strand, 10500575 - 10500500
Alignment:
Q  81 ttgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaacacctatattattat 156  Q
    |||||||||||||| ||||| || ||||| || |  |||||||| |||||||||||||||||||||| ||||||||    
T  10500575 ttgtaaacaagttgagcaagtgttgttttaccgacgcctcccatacccaaaattgcaacaacacctaaattattat 10500500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 26906983 - 26906795
Alignment:
Q  14 aatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcct 113  Q
    ||||||||||||||||||||||||| ||||  || ||| |||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  26906983 aatatcaaaatcctcagacacacaaacccatgccttcaaatcaaaatgccgttgaacttctttatcattgtaaagaagttgggcaagggtagtttttcct 26906884  T
Q  114 aaacctcccatgcccaaaattgcaacaacacctatattattatgggttgtatctctctgtgacagcaacatgttcattattgtctcttt 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||| |||||||||||||||||    
T  26906883 aaacctcccatgcccaaaattgcaacaacacctatattattatgggttgtgtctctctctgatagcaacatattcattattgtctcttt 26906795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 12 - 145
Target Start/End: Original strand, 135869 - 136002
Alignment:
Q  12 agaatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttc 111  Q
    |||||||| |||||||| || |||||| |||| ||  ||| ||||||||| | |||||||||||||||||| |||| |||||||||||| || ||||| |    
T  135869 agaatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcttgaacttctttatcattataaagaagttgggcaagagtggttttgc 135968  T
Q  112 ctaaacctcccatgcccaaaattgcaacaacacc 145  Q
    | | ||| ||||| |||||||||||||| |||||    
T  135969 caacaccgcccatacccaaaattgcaaccacacc 136002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 12 - 145
Target Start/End: Original strand, 145920 - 146053
Alignment:
Q  12 agaatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttc 111  Q
    |||||||| |||||||| || |||||| |||| ||  ||| ||||||||| | |||||||||||||||||| |||| |||||||||||| || ||||| |    
T  145920 agaatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcttgaacttctttatcattataaagaagttgggcaagagtggttttgc 146019  T
Q  112 ctaaacctcccatgcccaaaattgcaacaacacc 145  Q
    | | ||| ||||| |||||||||||||| |||||    
T  146020 caacaccgcccatacccaaaattgcaaccacacc 146053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 53 - 156
Target Start/End: Complemental strand, 11485064 - 11484961
Alignment:
Q  53 atcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaacacctatatta 152  Q
    ||||||||| |||| ||||| || ||| |||||||||||||| |||||||| ||||| || |  ||||||||  ||||||||||||||||||||| ||||    
T  11485064 atcaaaatgctgttcaactttttcatcgttgtaaacaagttgtgcaagggtcgttttaccgacgcctcccataaccaaaattgcaacaacacctaaatta 11484965  T
Q  153 ttat 156  Q
    ||||    
T  11484964 ttat 11484961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 156
Target Start/End: Original strand, 44957735 - 44957834
Alignment:
Q  57 aaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaacacctatattattat 156  Q
    |||||||||| ||||| | ||||||||||||||||||| || || || ||||| || | ||||||||| || ||  | ||||||||||||| ||||||||    
T  44957735 aaatgttgttcaacttttatatcattgtaaacaagttgtgcgagagtcgttttaccgacacctcccatacctaaggtggcaacaacacctaaattattat 44957834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 53 - 156
Target Start/End: Original strand, 17852966 - 17853069
Alignment:
Q  53 atcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaacacctatatta 152  Q
    ||||||||| |||| ||| | || ||||||||||||||| || |||||||| ||||| || | ||||||||| ||||| |||||||||||||||| |||     
T  17852966 atcaaaatgatgttcaaccttttcatcattgtaaacaagctgtgcaagggtcgttttaccgacacctcccatccccaatattgcaacaacacctaaattg 17853065  T
Q  153 ttat 156  Q
    ||||    
T  17853066 ttat 17853069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 100
Target Start/End: Original strand, 7128998 - 7129044
Alignment:
Q  54 tcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaag 100  Q
    |||||||||||||| |||||||| |||||||| |||||||| |||||    
T  7128998 tcaaaatgttgttgcacttctttgtcattgtatacaagttgagcaag 7129044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 7482138 - 7482094
Alignment:
Q  56 aaaatgttgttgaacttctttatcattgtaaacaagttgggcaag 100  Q
    |||||||||||| |||||||| |||||||| |||||||| |||||    
T  7482138 aaaatgttgttgcacttctttgtcattgtatacaagttgagcaag 7482094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 53 - 143
Target Start/End: Original strand, 31679755 - 31679845
Alignment:
Q  53 atcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaaca 143  Q
    ||||||| ||| |||||| |||||||||||||||| |||||| || ||||  ||||| || | |||||||||||| ||||||| |||||||    
T  31679755 atcaaaacgttcttgaacatctttatcattgtaaagaagttgagctagggctgttttaccgacacctcccatgccgaaaattgaaacaaca 31679845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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