View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19675_low_93 (Length: 204)
Name: NF19675_low_93
Description: NF19675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19675_low_93 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 13 - 167
Target Start/End: Complemental strand, 10495413 - 10495259
Alignment:
| Q |
13 |
atgaagaagaagcgggaattgaaacgaacgatgaggtgtgattatagtacgaagatcagcctcacacactataaacctacgcacccccaaggaagggttt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10495413 |
atgaagaagaagcgggaattgaaacgaacgatgaggtgtgagtatagtacgaagatcagcctcacacactgtaaacctacgcacccccaaggaagggttt |
10495314 |
T |
|
| Q |
113 |
tacccaaagggttttacatagcacgcaattccatttcattctattgttttctatc |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10495313 |
tacccaaagggttttacatagcacgcaattccatttcattctattgttttctatc |
10495259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 113 - 167
Target Start/End: Complemental strand, 10509529 - 10509475
Alignment:
| Q |
113 |
tacccaaagggttttacatagcacgcaattccatttca-ttctattgttttctatc |
167 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||| ||||||||||||||||| |
|
|
| T |
10509529 |
tacccaaagggttttacatagcac-aatttccatttcatttctattgttttctatc |
10509475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University