View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19676_high_2 (Length: 503)
Name: NF19676_high_2
Description: NF19676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19676_high_2 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 18 - 503
Target Start/End: Complemental strand, 41094871 - 41094397
Alignment:
| Q |
18 |
caatttgatcctctaaaagacacaccagaaatctttatacaaataactaatcgtttctgactcattataacaaaaggactactttgtcatcaatataaaa |
117 |
Q |
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| T |
41094871 |
caatttgatcctccaaaagacacaccataaatctttatacaaataactaatcgtt-----------ataacaaaaggactactttgtcatcaatataaaa |
41094783 |
T |
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| Q |
118 |
atgtcagggactagtttgagtattgtttttgtcaagtactaaattagaccacgcgaaaattataagggactnnnnnnntgaattttctgattgtgtgaaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
41094782 |
atgtcagggactagtttgagtattgtttttgtcaagtactaaattagaccacgcgaaaattataagggactaaaaaaatgaattttcagattgtgtgaaa |
41094683 |
T |
|
| Q |
218 |
tagttttgtcgaaacttctactcagattgtattatttagatgtttgtgtaatatttcaaaaaacaatactataaactgatttactcattgagtgcatgat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41094682 |
tagttttgtcgaaacttctactcagattgtattatttagatgtttgtgtaatatttcaaaaaacaatactataaactgatttactcattgagtgcatgat |
41094583 |
T |
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| Q |
318 |
aaaaattgtaatacaaaataatacaagcttccatttcccataacacaaaagtcacattacatgtaacaatacatatatatagattaatttcagcaaaaga |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
41094582 |
aaaaattgtaatacaaaataatacaagcttccatttcccataacacaaaagtcacattacatgtaacaatacatacatatagattaatttcagcaaaaga |
41094483 |
T |
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| Q |
418 |
gnnnnnnnngaaatgtaaccttcgccattcgcgtctagcaaagccttcctcttgcatttgagtgggatcaggaagaacaggacctt |
503 |
Q |
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| T |
41094482 |
gaaaaaaaagaaatgtaaccttcgccattcgcgtctagcaaagccttcctcttgcatttgagtgggatcaggaagaacaggacctt |
41094397 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 31317903 - 31317846
Alignment:
| Q |
78 |
ctcattataacaaaaggactactttgtcatcaatataaaaatgtcagggactagtttg |
135 |
Q |
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| T |
31317903 |
ctcattataacaaaaggactaatttgtccccatttttaaaatgtcagggactagtttg |
31317846 |
T |
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