View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19676_low_10 (Length: 234)
Name: NF19676_low_10
Description: NF19676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19676_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 216
Target Start/End: Original strand, 11763928 - 11764129
Alignment:
| Q |
15 |
cataggtaagattatgtgtctgtttaaattgacttatttgaactaatctattggtataaataacttatgacatgctcataagttatttttcaacttattt |
114 |
Q |
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| T |
11763928 |
cataggtaagattatgtgtctgtttaaattgacttatttgaactaatctattggtataaataacttatgacatgctcataagttatttttcaacttattt |
11764027 |
T |
|
| Q |
115 |
ttataagctcttcataatacggtatagaaataccttataacttatatgaaaacagtttcagtttattttactatttgttgattgattactttaatgcttt |
214 |
Q |
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|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
11764028 |
ttataagcacttcataatacggtatggaaataccttataacttatatgaaaacagtttcagtttattttactatttgttgattgattacttgaatgcttt |
11764127 |
T |
|
| Q |
215 |
tc |
216 |
Q |
| |
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|| |
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| T |
11764128 |
tc |
11764129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 781185 - 781221
Alignment:
| Q |
149 |
ttataacttatatgaaaacagtttcagtttattttac |
185 |
Q |
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| T |
781185 |
ttataacttatatgaaaacagtttcactttattttac |
781221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 129
Target Start/End: Complemental strand, 5150999 - 5150961
Alignment:
| Q |
91 |
cataagttatttttcaacttatttttataagctcttcat |
129 |
Q |
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| T |
5150999 |
cataagttttttttcaacttatttctataagctcttcat |
5150961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 30598203 - 30598237
Alignment:
| Q |
42 |
attgacttatttgaactaatctattggtataaata |
76 |
Q |
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| T |
30598203 |
attgacttatttgaacttatctattggtataaata |
30598237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 184
Target Start/End: Complemental strand, 44422744 - 44422668
Alignment:
| Q |
108 |
cttatttttataagctcttcataatacggtatagaaataccttataacttatatgaaaacagtttcagtttatttta |
184 |
Q |
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| T |
44422744 |
cttattttcataagctctccaggatagcttataaaaatagcttatagcttatatgaaaacagtttgagattatttta |
44422668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 193
Target Start/End: Complemental strand, 28306159 - 28306118
Alignment:
| Q |
152 |
taacttatatgaaaacagtttcagtttattttactatttgtt |
193 |
Q |
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|
| T |
28306159 |
taacttatatgaaaacagtttgactttattttactttttgtt |
28306118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 43529774 - 43529815
Alignment:
| Q |
32 |
gtctgtttaaattgacttatttgaactaatctattggtataa |
73 |
Q |
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| T |
43529774 |
gtctgtttgaattgacttatttgagcttatctattggtataa |
43529815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 37053599 - 37053563
Alignment:
| Q |
148 |
cttataacttatatgaaaacagtttcagtttatttta |
184 |
Q |
| |
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||||||||||||||||||||||||| | ||||||||| |
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|
| T |
37053599 |
cttataacttatatgaaaacagtttgactttatttta |
37053563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 10154226 - 10154190
Alignment:
| Q |
148 |
cttataacttatatgaaaacagtttcagtttatttta |
184 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||| |
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|
| T |
10154226 |
cttataacttatatgaaaacagtttgactttatttta |
10154190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 35516978 - 35517018
Alignment:
| Q |
30 |
gtgtctgtttaaattgacttatttgaactaatctattggta |
70 |
Q |
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|||| |||||| |||||||||||||| |||||||||||||| |
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| T |
35516978 |
gtgtatgtttagattgacttatttgagctaatctattggta |
35517018 |
T |
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