View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19676_low_3 (Length: 488)
Name: NF19676_low_3
Description: NF19676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19676_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 15 - 478
Target Start/End: Complemental strand, 14442410 - 14441947
Alignment:
| Q |
15 |
agtttttgctcattttagaatgccacgaaagtgacagacatgtgcatgttttttgcaaacactacacctatttagagacatacaacaaacacattcacgt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
14442410 |
agtttttgctcattttagaatgccacgaaagtgacagacatgtgcatgttttttgcaaacactacacctatttggagacatacaacaaacacattcacgt |
14442311 |
T |
|
| Q |
115 |
aaatgcatggagttgtagattttacatgcagatgagtaacatggggtttgtctatttggtgcccactacaatgtacttatccatgcatgctcaacctcat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14442310 |
aaatgcatggagttgtagattttacatgcagatgagtaacatggggtttgtctatttggtgcccactacaatgtacttatccatgcatgctcaacctcat |
14442211 |
T |
|
| Q |
215 |
aacaaatgtatttgtcaacnnnnnnnnnnnnnnntacaactcacaacattgtaatttagttatagtaaaaaattattttaatgagttgtttgtatacgtt |
314 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
14442210 |
aacaaatgtatttgtcaacaaaaaaaataaaaaatacaactcacaacattgtaatttagttatagtaaaaaattattttaatgagttgtttgtatatgtt |
14442111 |
T |
|
| Q |
315 |
aagagtgttaacatcacaatttttaacgtacacttttcaacataccgtttgattaattaaaatttatgtaggtcccatcaaaatatgtggattgtataaa |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
14442110 |
aagagtgttaacatcacaatttttaacgtacacttttcaacatactgtttgattaattaaaatttatgtgggtcccatcaaaatatgtggattgtataaa |
14442011 |
T |
|
| Q |
415 |
tttactacaatccatataaatttgaaacgaataaaatagagtttgttagcataattattatatt |
478 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14442010 |
tttactagaatccatataaatttgaaacgaataaaatagagtttgttagcataattattatatt |
14441947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University