View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19676_low_4 (Length: 390)
Name: NF19676_low_4
Description: NF19676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19676_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 41094401 - 41094014
Alignment:
| Q |
1 |
accttcagaagagaagattccatcatcagtttcattggtttgaaacggagtaacgaaatcagggttagggttagggcttgaaactccgaatccatatccg |
100 |
Q |
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| T |
41094401 |
accttcagaagagaagattccatcatcagtttcattggtttgaaacggagtaacgaaatcagggttagggttagggcttgaaactccgaatccatatccg |
41094302 |
T |
|
| Q |
101 |
ggaggagaatgttggtcattgttgatgttgttgctggtgtcaacggtgaggtgatcgtcgtcgggattatttggaggatggaatgtggatccataatcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41094301 |
ggaggagaatgttggtcattgttgatgttgttgctggtgtcaacggtgaggtgatcgtcgtcgggattatttggaggatggaatgtggatccataatcaa |
41094202 |
T |
|
| Q |
201 |
actgctgttgagaattgaatccttcatagttactattattgtcatcttcaaaaggtcctcctactactactcctcctcctccaccagtggttggagattg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41094201 |
actgctgttgagaattgaatccttcatagttactattgttgtcatcttcaaaaggtcctcctactactactcctcctcctccaccagtggttggagattg |
41094102 |
T |
|
| Q |
301 |
atgatgtgactgctcttcctcaaacgagtctagagactccatagttgaattaccttagcttcggatcacaattctttccgttcctttg |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
41094101 |
atgatgtgactgctcttcctcaaacgagtctagagactccatagttgaattaccttagcttcggatcacaattctttctgttcctttg |
41094014 |
T |
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