View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19676_low_5 (Length: 377)
Name: NF19676_low_5
Description: NF19676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19676_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 17 - 368
Target Start/End: Complemental strand, 14694547 - 14694196
Alignment:
| Q |
17 |
aaaacctcatatcaatatgtttgatcatggcatgatacacttgactatttatcaaataaatggcactcgaactatcacaatgtgtgtgaactccgtcttg |
116 |
Q |
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| T |
14694547 |
aaaacctcatatcaatatgtttgatcatggcatgatacacttgactatttatcaaataaatggcactcgaactatcacaatgtgtgtgaactccgtcttg |
14694448 |
T |
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| Q |
117 |
cccaacatcaaatccctccaccaatcatgtaagccaaaagaggcctctttggcaacatcgtctatagccatgtactcttcaatgattgcttctaaaaaag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14694447 |
cccaacatcaaatccctccaccaatcatgtaagccaaaagaggcctctttggcaacatcgtctatagccatgtactcttcaatgattgcttctaaaaaag |
14694348 |
T |
|
| Q |
217 |
tgtcatcacccattcaaacttagagatggatagttacagttgtttcaggatttcacaaccaagcattagttaatactttggaggatatttcatttatagg |
316 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
14694347 |
tgtcatcacccgttcaaacttagagatggatagttacagttgtttcaggatttcacaaccatgcattagttaatactttggaggatatttcatttatagg |
14694248 |
T |
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| Q |
317 |
acatttatgtgaagaaaagcaaacattgatggatgatatgaccaagtataat |
368 |
Q |
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| T |
14694247 |
acatttatgagaaaaaaagcaaacattgatgcatgatatgaccaagtataat |
14694196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 9838339 - 9838262
Alignment:
| Q |
18 |
aaacctcatatcaatatgtttgatcatggcatgatacacttgactatttatcaaataaatggcactcgaactatcaca |
95 |
Q |
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| T |
9838339 |
aaacctcgcatcaatatgcttggtcttggcatgatacacttgattatttgccaaataaatgacactccaactatcaca |
9838262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 34726978 - 34726897
Alignment:
| Q |
17 |
aaaacctcatatcaatatgtttgatcatggcatgatacacttgactatttatcaaataaatggcactcgaactatcacaatg |
98 |
Q |
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|||| |||| ||||||||| ||| | ||||||||||||||||| ||||| ||||||||||| |||| ||||||||||||| |
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| T |
34726978 |
aaaaactcacatcaatatgcttggttttggcatgatacacttgattatttttcaaataaatgacactataactatcacaatg |
34726897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 32985545 - 32985465
Alignment:
| Q |
18 |
aaacctcatatcaatatgtttgatcatggcatgatacacttgactatttatcaaataaatggcactcgaactatcacaatg |
98 |
Q |
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|||||| | ||||||||| ||||| ||||||||||||||||| | ||| ||||||||||| ||||| |||||||||||| |
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| T |
32985545 |
aaaccttacatcaatatgcttgatattggcatgatacacttgattgtttgtcaaataaatgacactctgactatcacaatg |
32985465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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