View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19676_low_6 (Length: 304)
Name: NF19676_low_6
Description: NF19676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19676_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 295
Target Start/End: Original strand, 36205442 - 36205727
Alignment:
| Q |
18 |
agtaaacttattcaatcattaaagaaaagatgtttcttatcacacca--------gggataagaaaaagtacaatcatttgcataatttcaagcatccat |
109 |
Q |
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| T |
36205442 |
agtaaacttattcaatcaataaagaaaagatgtttcttatcacaccaccctcaaagggataagaagaagtacaatcatttgcataatttcaagcatccat |
36205541 |
T |
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| Q |
110 |
tactcttccaattctcaaatatacttgaaacttggcagtcttttggccaccttcaccccaagcaagtttgaatttttcaataacatcctccttaagcagt |
209 |
Q |
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| T |
36205542 |
tactcttccaattctcaaatatacttgaaacttgacagtcttttggccatcttcaccacgagcaagtttaaaattttcaataacatcctccttaagcagt |
36205641 |
T |
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| Q |
210 |
tcaacccctttattctttgatgtctggtatgctgaccttgatcttatataagtcaagaaatcatcaaaatccatcacagtctctgc |
295 |
Q |
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| T |
36205642 |
tcaaccccgttattctttgatgtctgatatgatgaccttgatcttatataagtcaagaaatcatcaaaatccatcacagtctctgc |
36205727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 64 - 292
Target Start/End: Original strand, 36208583 - 36208811
Alignment:
| Q |
64 |
agggataagaaaaagtacaatcatttgcataatttcaagcatccattactcttccaattctcaaatatacttgaaacttggcagtcttttggccaccttc |
163 |
Q |
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| T |
36208583 |
agggataagaaaaagtacaatcatttgcatattttcaagcatcccttactcttccaattctcagatatacttgaaacttggcaatcttttttccatcttc |
36208682 |
T |
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| Q |
164 |
accccaagcaagtttgaatttttcaataacatcctccttaagcagttcaacccctttattctttgatgtctggtatgctgaccttgatcttatataagtc |
263 |
Q |
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| T |
36208683 |
tccccaagcaagtttgaatttttcaataacatcatcagtaagaagctcaacccctttattctttgatgactgataagctgaccttgatcttatataattc |
36208782 |
T |
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| Q |
264 |
aagaaatcatcaaaatccatcacagtctc |
292 |
Q |
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| T |
36208783 |
aagaagtcatccaaatccatcacagtctc |
36208811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 111 - 278
Target Start/End: Complemental strand, 35400147 - 35399980
Alignment:
| Q |
111 |
actcttccaattctcaaatatacttgaaacttggcagtcttttggccaccttcaccccaagcaagtttgaatttttcaataacatcctccttaagcagtt |
210 |
Q |
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| T |
35400147 |
actcttccaattctcagataaactggaaacttggcagttttgtggccatcttcaccccaagcaagcttaaatttttcaactacgtcctcaccaagaagct |
35400048 |
T |
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| Q |
211 |
caacccctttattctttgatgtctggtatgctgaccttgatcttatataagtcaagaaatcatcaaaa |
278 |
Q |
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| T |
35400047 |
ccacacccttcttctttgctgtctgataagctgaccatgattttatatatgttaacaaaccatcaaaa |
35399980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 111 - 278
Target Start/End: Complemental strand, 35405076 - 35404909
Alignment:
| Q |
111 |
actcttccaattctcaaatatacttgaaacttggcagtcttttggccaccttcaccccaagcaagtttgaatttttcaataacatcctccttaagcagtt |
210 |
Q |
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| T |
35405076 |
actcttccaattctcagataaactggaaacttggcagttttgtggccatcttcaccccaagcaagcttaaatttttcaactacgtcctcaccaagaagct |
35404977 |
T |
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| Q |
211 |
caacccctttattctttgatgtctggtatgctgaccttgatcttatataagtcaagaaatcatcaaaa |
278 |
Q |
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| T |
35404976 |
ccacacccttctcctttgctgtctgataagctgaccatgattttatataagttaacaaaccatcaaaa |
35404909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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