View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19676_low_7 (Length: 247)

Name: NF19676_low_7
Description: NF19676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19676_low_7
NF19676_low_7
[»] chr4 (46 HSPs)
chr4 (14-176)||(9096225-9096387)
chr4 (174-247)||(36945236-36945309)
chr4 (174-247)||(20075525-20075598)
chr4 (174-247)||(55816463-55816536)
chr4 (177-247)||(25369786-25369856)
chr4 (174-247)||(198999-199072)
chr4 (182-247)||(12639973-12640038)
chr4 (174-247)||(20422131-20422204)
chr4 (173-246)||(48090465-48090538)
chr4 (174-247)||(48782087-48782160)
chr4 (174-247)||(52597490-52597563)
chr4 (182-247)||(52597724-52597789)
chr4 (173-244)||(12640602-12640673)
chr4 (173-247)||(35427245-35427318)
chr4 (169-247)||(40345143-40345221)
chr4 (182-247)||(199239-199304)
chr4 (182-247)||(388761-388826)
chr4 (174-247)||(389418-389491)
chr4 (174-247)||(26423759-26423832)
chr4 (182-247)||(31876796-31876861)
chr4 (174-247)||(36111230-36111302)
chr4 (174-247)||(40848143-40848216)
chr4 (182-245)||(37567489-37567552)
chr4 (185-247)||(25370405-25370467)
chr4 (182-247)||(2713856-2713921)
chr4 (182-247)||(20422744-20422809)
chr4 (182-247)||(26424417-26424482)
chr4 (182-247)||(32291023-32291088)
chr4 (182-247)||(55815833-55815898)
chr4 (174-245)||(3708779-3708844)
chr4 (172-247)||(31877445-31877521)
chr4 (174-247)||(32902478-32902551)
chr4 (182-247)||(40847685-40847750)
chr4 (182-247)||(48091108-48091173)
chr4 (176-247)||(28223565-28223636)
chr4 (182-245)||(32901859-32901922)
chr4 (182-247)||(29809100-29809165)
chr4 (182-247)||(33569728-33569793)
chr4 (182-247)||(36944618-36944683)
chr4 (182-247)||(47321767-47321832)
chr4 (174-224)||(52869447-52869497)
chr4 (182-247)||(6862655-6862720)
chr4 (191-247)||(31842736-31842791)
chr4 (174-223)||(3221424-3221473)
chr4 (182-247)||(40344511-40344576)
chr4 (174-207)||(52722125-52722158)
[»] chr5 (18 HSPs)
chr5 (173-247)||(26687499-26687573)
chr5 (173-247)||(26957230-26957304)
chr5 (182-247)||(4929519-4929584)
chr5 (182-247)||(3957508-3957573)
chr5 (182-247)||(28075982-28076047)
chr5 (174-247)||(21769994-21770071)
chr5 (182-245)||(8813698-8813761)
chr5 (174-247)||(4928871-4928944)
chr5 (182-247)||(5324416-5324481)
chr5 (174-238)||(5324304-5324368)
chr5 (174-247)||(3739676-3739749)
chr5 (178-247)||(3958147-3958216)
chr5 (182-247)||(33430051-33430115)
chr5 (175-232)||(8813078-8813135)
chr5 (212-247)||(3739038-3739073)
chr5 (174-224)||(39148768-39148818)
chr5 (183-223)||(25075034-25075074)
chr5 (183-223)||(25133003-25133043)
[»] chr2 (33 HSPs)
chr2 (171-247)||(28224401-28224477)
chr2 (174-247)||(6849288-6849361)
chr2 (169-247)||(8112675-8112753)
chr2 (174-247)||(7717298-7717370)
chr2 (174-247)||(16887583-16887656)
chr2 (177-245)||(10883290-10883358)
chr2 (174-247)||(3595246-3595319)
chr2 (182-247)||(4386973-4387038)
chr2 (182-247)||(8963512-8963577)
chr2 (182-247)||(9224274-9224339)
chr2 (178-247)||(11256120-11256189)
chr2 (182-247)||(16571126-16571191)
chr2 (185-247)||(16903102-16903164)
chr2 (177-247)||(39477338-39477408)
chr2 (182-247)||(3595908-3595973)
chr2 (182-247)||(7716679-7716744)
chr2 (182-247)||(8113313-8113378)
chr2 (174-247)||(16571739-16571812)
chr2 (182-247)||(20244184-20244249)
chr2 (182-247)||(28223796-28223861)
chr2 (174-241)||(4386355-4386422)
chr2 (174-245)||(40166858-40166929)
chr2 (185-247)||(6849555-6849617)
chr2 (174-247)||(7583132-7583205)
chr2 (174-247)||(17918021-17918094)
chr2 (185-247)||(11256753-11256815)
chr2 (182-247)||(7583806-7583871)
chr2 (210-247)||(20243589-20243626)
chr2 (182-247)||(30161941-30162006)
chr2 (182-247)||(33847881-33847946)
chr2 (182-247)||(40165881-40165946)
chr2 (193-247)||(39476534-39476588)
chr2 (210-247)||(467141-467178)
[»] chr8 (33 HSPs)
chr8 (174-245)||(30116011-30116082)
chr8 (174-247)||(11998456-11998529)
chr8 (174-247)||(36848210-36848283)
chr8 (174-247)||(44061985-44062058)
chr8 (182-247)||(7818482-7818547)
chr8 (182-247)||(33114201-33114266)
chr8 (182-247)||(35237267-35237332)
chr8 (174-247)||(40907599-40907671)
chr8 (174-247)||(43481294-43481367)
chr8 (174-243)||(43591007-43591076)
chr8 (173-247)||(7819110-7819184)
chr8 (182-247)||(16889203-16889268)
chr8 (182-247)||(39852162-39852227)
chr8 (182-247)||(43480624-43480689)
chr8 (179-247)||(16880531-16880599)
chr8 (190-246)||(44062610-44062666)
chr8 (182-247)||(11999093-11999158)
chr8 (174-247)||(16889841-16889913)
chr8 (174-247)||(38778808-38778881)
chr8 (182-245)||(10806452-10806515)
chr8 (184-247)||(33113585-33113648)
chr8 (176-247)||(35237877-35237947)
chr8 (173-247)||(39852816-39852890)
chr8 (182-247)||(43591629-43591694)
chr8 (192-247)||(38778172-38778227)
chr8 (193-247)||(30115386-30115440)
chr8 (210-247)||(2209042-2209079)
chr8 (174-247)||(4373686-4373759)
chr8 (182-247)||(16879896-16879961)
chr8 (182-247)||(40309513-40309578)
chr8 (174-206)||(37533331-37533363)
chr8 (212-247)||(4374314-4374349)
chr8 (182-247)||(4375005-4375070)
[»] chr1 (24 HSPs)
chr1 (173-247)||(52859801-52859875)
chr1 (174-247)||(1403701-1403773)
chr1 (174-247)||(8560756-8560828)
chr1 (174-247)||(42839701-42839774)
chr1 (174-247)||(43368848-43368921)
chr1 (182-247)||(1403048-1403113)
chr1 (182-247)||(6288217-6288282)
chr1 (174-247)||(7219661-7219733)
chr1 (182-247)||(8560164-8560229)
chr1 (174-247)||(27797117-27797190)
chr1 (182-247)||(27797749-27797814)
chr1 (174-247)||(42840326-42840399)
chr1 (176-247)||(48843582-48843653)
chr1 (182-245)||(49534411-49534474)
chr1 (182-247)||(27817017-27817082)
chr1 (174-243)||(41563179-41563248)
chr1 (182-247)||(42838945-42839010)
chr1 (178-247)||(49533747-49533816)
chr1 (188-247)||(42839561-42839620)
chr1 (187-247)||(43368203-43368263)
chr1 (173-247)||(51248496-51248570)
chr1 (182-247)||(7782704-7782769)
chr1 (212-247)||(48843975-48844010)
chr1 (174-206)||(48620377-48620409)
[»] chr3 (41 HSPs)
chr3 (174-247)||(23584237-23584310)
chr3 (174-247)||(23599060-23599133)
chr3 (173-244)||(25025780-25025851)
chr3 (173-247)||(31014336-31014410)
chr3 (174-247)||(29342341-29342414)
chr3 (174-247)||(44868631-44868704)
chr3 (182-247)||(3944903-3944968)
chr3 (174-247)||(41459130-41459202)
chr3 (174-247)||(41875629-41875702)
chr3 (182-247)||(50675138-50675203)
chr3 (174-247)||(55281835-55281908)
chr3 (173-247)||(8427756-8427830)
chr3 (182-247)||(23584896-23584961)
chr3 (182-247)||(23599719-23599784)
chr3 (182-247)||(25025182-25025247)
chr3 (174-247)||(43658255-43658327)
chr3 (182-247)||(50687721-50687786)
chr3 (182-245)||(44868015-44868078)
chr3 (185-247)||(48219248-48219310)
chr3 (174-247)||(24220579-24220652)
chr3 (174-247)||(37375481-37375554)
chr3 (174-247)||(48218591-48218664)
chr3 (185-247)||(32672177-32672239)
chr3 (185-247)||(37373976-37374038)
chr3 (174-247)||(19555936-19556012)
chr3 (182-247)||(42356241-42356309)
chr3 (182-247)||(31014937-31015002)
chr3 (174-247)||(37374619-37374692)
chr3 (182-247)||(37374828-37374888)
chr3 (174-223)||(38279409-38279458)
chr3 (174-223)||(46187033-46187082)
chr3 (210-247)||(49752923-49752960)
chr3 (182-247)||(55282434-55282498)
chr3 (212-247)||(43658908-43658943)
chr3 (172-246)||(47737062-47737135)
chr3 (182-247)||(19555278-19555343)
chr3 (182-223)||(24221218-24221259)
chr3 (210-247)||(47737686-47737723)
chr3 (175-228)||(50674630-50674683)
chr3 (182-218)||(49164694-49164730)
chr3 (174-206)||(49752265-49752297)
[»] chr7 (27 HSPs)
chr7 (174-246)||(19816264-19816336)
chr7 (175-247)||(36683477-36683549)
chr7 (172-247)||(24044056-24044131)
chr7 (172-247)||(47814648-47814723)
chr7 (174-247)||(34853391-34853464)
chr7 (174-247)||(42456529-42456602)
chr7 (182-247)||(4895095-4895160)
chr7 (182-247)||(19816905-19816970)
chr7 (174-247)||(22275425-22275497)
chr7 (182-247)||(36682843-36682908)
chr7 (174-247)||(46814405-46814478)
chr7 (185-243)||(22276093-22276151)
chr7 (182-247)||(34854009-34854074)
chr7 (188-247)||(47813985-47814044)
chr7 (190-247)||(4894515-4894572)
chr7 (174-247)||(24323995-24324067)
chr7 (182-247)||(27855574-27855638)
chr7 (182-247)||(42455929-42455994)
chr7 (182-247)||(46732575-46732640)
chr7 (178-247)||(30711792-30711861)
chr7 (212-247)||(32499287-32499322)
chr7 (174-224)||(84377-84427)
chr7 (174-228)||(27856162-27856216)
chr7 (182-247)||(33805977-33806042)
chr7 (182-247)||(36620126-36620191)
chr7 (210-243)||(46815079-46815112)
chr7 (215-247)||(32499885-32499917)
[»] chr6 (13 HSPs)
chr6 (175-247)||(5523201-5523273)
chr6 (174-247)||(6032158-6032231)
chr6 (174-247)||(30610711-30610784)
chr6 (174-247)||(12809069-12809142)
chr6 (182-245)||(13936655-13936718)
chr6 (182-247)||(5523859-5523924)
chr6 (182-247)||(33668229-33668294)
chr6 (182-247)||(12809715-12809780)
chr6 (182-243)||(30611362-30611423)
chr6 (174-247)||(33668843-33668916)
chr6 (187-247)||(31723846-31723906)
chr6 (182-247)||(6032766-6032831)
chr6 (178-243)||(13944294-13944359)
[»] scaffold1095 (1 HSPs)
scaffold1095 (174-247)||(1485-1558)
[»] scaffold0229 (1 HSPs)
scaffold0229 (182-247)||(15246-15311)
[»] scaffold0007 (1 HSPs)
scaffold0007 (182-247)||(11274-11338)
[»] scaffold0368 (1 HSPs)
scaffold0368 (182-247)||(11797-11862)


Alignment Details
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 46)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 14 - 176
Target Start/End: Complemental strand, 9096387 - 9096225
Alignment:
Q  14 gaacgaaacaaaagcagacatagctaagcctatgttnnnnnnncttaaaactaatccggtatttttgtcaaaagtaaataaccaaaaaataatattttgc 113  Q
    |||| ||||||||||||||||||||||| |||||||       ||||||||||||| |||||||||||||||  ||||| ||||||||||||||||||||    
T  9096387 gaaccaaacaaaagcagacatagctaagtctatgttaaaaaaacttaaaactaatctggtatttttgtcaaacataaatgaccaaaaaataatattttgc 9096288  T
Q  114 tttatattaacaaggaagtcgatgagccaaattagacaccattgtctataaaaagaagtgggt 176  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  9096287 tttatattaacaaggaagttgaggagccaaattagacaccattgtctataaaaagaagtgggt 9096225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 36945309 - 36945236
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||    
T  36945309 ggtgtgtgttcacatgggaaaggttaatccttttccaccatgggaaagttggattcaatgattagattaagtga 36945236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 20075525 - 20075598
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||||||||||   |||||||||||||| |||||||||||||||||||||||    
T  20075525 ggtgtgtgttcacatgggaaaggttaatcctttcccaccatgggaaagttggattcaatgattagattaagtga 20075598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 55816536 - 55816463
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||||||||||   |||||||||||||| |||||||||||||||||||||||    
T  55816536 ggtgtgtgttcacatgggaaaggttaatcctttcccaccatgggaaagttggattcaatgattagattaagtga 55816463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 177 - 247
Target Start/End: Original strand, 25369786 - 25369856
Alignment:
Q  177 gtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||||||||  || ||||||||||| |||||||||||||||||||||||    
T  25369786 gtgtgttcacatgggaaaggttaatccttttccactatgggaaagttggattcaatgattagattaagtga 25369856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 198999 - 199072
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||||||||||   ||||||||||||||  ||||||||||||||||||||||    
T  198999 ggtgtgtgttcacatgggaaaggttaatcctttcccaccatgggaaagttaaattcaatgattagattaagtga 199072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 12639973 - 12640038
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||    
T  12639973 ttcacatgggaaaggttaatccttttccaccatgggaaagttggattcaatgattagattaagtga 12640038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 20422131 - 20422204
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||||||||||   |||||||||||| | |||||||||||||||||||||||    
T  20422131 ggtgtgtgttcacatgggaaaggttaatcctttcccaccatgggaaaggtagattcaatgattagattaagtga 20422204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 173 - 246
Target Start/End: Original strand, 48090465 - 48090538
Alignment:
Q  173 gggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtg 246  Q
    ||||||||||||||||||||||||||||||| ||   |||||||||||||| ||||||||||||||||||||||    
T  48090465 gggtgtgtgttcacatgggaaaggttaatccattcccaccatgggaaagttggattcaatgattagattaagtg 48090538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 48782160 - 48782087
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||||||||||||||| |||   |||||||||||||| |||||||||||||||||||||||    
T  48782160 ggtgtgtgttcacatgggaaaggttaatcatttcgcaccatgggaaagttggattcaatgattagattaagtga 48782087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 52597490 - 52597563
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||||||||||||||| |||   |||||||||||||| |||||||||||||||||||||||    
T  52597490 ggtgtgtgttcacatgggaaaggttaatcttttcccaccatgggaaagttagattcaatgattagattaagtga 52597563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 52597789 - 52597724
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||    
T  52597789 ttcacatgggaaaggttaatcctttttcaccataggaaagttggattcaatgattagattaagtga 52597724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 173 - 244
Target Start/End: Complemental strand, 12640673 - 12640602
Alignment:
Q  173 gggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaag 244  Q
    ||||||||||||||||||||||| ||||||||||   |||||||||||||| ||||||||||||||||||||    
T  12640673 gggtgtgtgttcacatgggaaagcttaatcctttcccaccatgggaaagttggattcaatgattagattaag 12640602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 173 - 247
Target Start/End: Original strand, 35427245 - 35427318
Alignment:
Q  173 gggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||||||||||||   |||||||||| || |||||||||||||||||||||||    
T  35427245 gggtgtgtgttcacatgggaaaggttaatccttttccgccatgggaaa-ttggattcaatgattagattaagtga 35427318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 40345221 - 40345143
Alignment:
Q  169 aagtgggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||| ||||||||||||||||||||||||||||| |||   || ||||||||||| |||||||||||||||||||||||    
T  40345221 aagtaggtgtgtgttcacatgggaaaggttaatcttttcccacaatgggaaagttagattcaatgattagattaagtga 40345143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 199304 - 199239
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||   |||||||||||||| |||||||||||||||||||||||    
T  199304 ttcacatgggaaaggttaatcctttcccaccatgggaaagttggattcaatgattagattaagtga 199239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 388761 - 388826
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||   |||||||||||||| |||||||||||||||||||||||    
T  388761 ttcacatgggaaaggttaatcctttcccaccatgggaaagttggattcaatgattagattaagtga 388826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 389491 - 389418
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||||||||||   ||||||| |||||| |||||| ||||||||||||||||    
T  389491 ggtgtgtgttcacatgggaaaggttaatcctttcccaccatggaaaagttggattcagtgattagattaagtga 389418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 26423759 - 26423832
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||||||||||   ||||||  |||||| |||||||||||||||||||||||    
T  26423759 ggtgtgtgttcacatgggaaaggttaatcctttcccaccatgaaaaagttggattcaatgattagattaagtga 26423832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 31876796 - 31876861
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||||||||||||  ||||||| |||||| |||||||||||||||||||||||    
T  31876796 ttcacatgggaaaggttaatccttttccaccatggaaaagttggattcaatgattagattaagtga 31876861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 36111302 - 36111230
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||||||||||   ||||||||||| || |||||||||||||||||||||||    
T  36111302 ggtgtgtgttcacatgggaaaggttaatcctttcccaccatgggaaa-ttggattcaatgattagattaagtga 36111230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 40848216 - 40848143
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||| ||||||||||| ||| | || ||||||||||| |||||||||||||||||||||||    
T  40848216 ggtgtgtgttcacatggaaaaggttaatcatttctcactatgggaaagtttgattcaatgattagattaagtga 40848143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 37567552 - 37567489
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagt 245  Q
    |||||||||||||||||||| |||||  |||||||||||||| |||||||||||||||||||||    
T  37567552 ttcacatgggaaaggttaatacttttccaccatgggaaagttggattcaatgattagattaagt 37567489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 25370467 - 25370405
Alignment:
Q  185 acatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||||||||   |||||||||||||| |||||||||||||||||||||||    
T  25370467 acatgggaaaggttaatcctttcccaccatgggaaagttggattcaatgattagattaagtga 25370405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 2713921 - 2713856
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||   ||||||| |||||| |||||||||||||||||||||||    
T  2713921 ttcacatgggaaaggttaatcctttcccaccatggaaaagttggattcaatgattagattaagtga 2713856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 20422809 - 20422744
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||| |||||||||||  ||||||| |||||| |||||||||||||||||||||||    
T  20422809 ttcacatgggaaagcttaatccttttccaccatggaaaagttggattcaatgattagattaagtga 20422744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 26424482 - 26424417
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||| | |||||  |||||||||||||| |||||||||||||||||||||||    
T  26424482 ttcacatgggaaaggttagttcttttccaccatgggaaagttggattcaatgattagattaagtga 26424417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 32291023 - 32291088
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||||||| |||  || |||||||||||| |||||||||||||||||||||||    
T  32291023 ttcacatgggaaaggttaatcatttccaatcatgggaaagttggattcaatgattagattaagtga 32291088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 55815833 - 55815898
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||   || ||||||||||| |||||||||||||||||||||||    
T  55815833 ttcacatgggaaaggttaatcctttcccactatgggaaagttggattcaatgattagattaagtga 55815898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 174 - 245
Target Start/End: Original strand, 3708779 - 3708844
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagt 245  Q
    ||||||||||||||||||||||||||||||      |||||||||||||| |||||||||||||||||||||    
T  3708779 ggtgtgtgttcacatgggaaaggttaatcc------accatgggaaagttggattcaatgattagattaagt 3708844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 172 - 247
Target Start/End: Complemental strand, 31877521 - 31877445
Alignment:
Q  172 tgggtgtgtgttcacatgggaaaggtt-aatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||||| ||| ||| |||||||||| || ||||||||||| |||| ||||||||||||||||||    
T  31877521 tgggtgtgtgttcacatggaaaaagtttaatcctttttcactatgggaaagttggatttaatgattagattaagtga 31877445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 32902551 - 32902478
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||| |||||||||||  |||   ||||||||||||||  ||||||||||||||||||||||    
T  32902551 ggtgtgtgttcacatgagaaaggttaatattttcccaccatgggaaagttgaattcaatgattagattaagtga 32902478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 40847685 - 40847750
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||| |||||||||||||||   |||||| ||||||| |||||||||||||||||||||||    
T  40847685 ttcacatggaaaaggttaatcctttcccaccatgagaaagttggattcaatgattagattaagtga 40847750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 48091173 - 48091108
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||| |||||||||||||||| |||   |||||||||||||| |||||||||||||||||||||||    
T  48091173 ttcatatgggaaaggttaatcttttcccaccatgggaaagttggattcaatgattagattaagtga 48091108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 176 - 247
Target Start/End: Original strand, 28223565 - 28223636
Alignment:
Q  176 tgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||||||||||||| |||    | ||| ||||||| |||||||||||||||||||||||    
T  28223565 tgtgtgttcacatgggaaaggttaatcttttccctctatgagaaagttggattcaatgattagattaagtga 28223636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 182 - 245
Target Start/End: Original strand, 32901859 - 32901922
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagt 245  Q
    ||||||||||||| | | ||||||||  |||||||||||||| |||||||||||||||||||||    
T  32901859 ttcacatgggaaaagattatccttttccaccatgggaaagttggattcaatgattagattaagt 32901922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 29809165 - 29809100
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||| |||||||||||||||| ||| | | ||||||||||||  ||||||||||||||||||||||    
T  29809165 ttcatatgggaaaggttaatcatttcttatcatgggaaagttgaattcaatgattagattaagtga 29809100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 33569728 - 33569793
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||| ||||||||   ||||||| |||||| |||||||| ||||||||||||||    
T  33569728 ttcacatgggaaaggtcaatcctttcccaccatggaaaagttggattcaataattagattaagtga 33569793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 36944618 - 36944683
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||| | |||||||||||| ||||  ||||||| |||||| |||||||||||||||||||||||    
T  36944618 ttcacacgtgaaaggttaatctttttccaccatggaaaagttggattcaatgattagattaagtga 36944683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 47321767 - 47321832
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||| |||||||||||||||||||| | || |||| |||||| |||| ||||||||||||||||||    
T  47321767 ttcatatgggaaaggttaatcctttatcactatggaaaagttggatttaatgattagattaagtga 47321832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 52869447 - 52869497
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttc 224  Q
    |||||||||||||||||||||||| ||||||||   |||||||||||||||    
T  52869447 ggtgtgtgttcacatgggaaaggtgaatcctttcccaccatgggaaagttc 52869497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 6862655 - 6862720
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||| |||||||| |||| ||||  ||||| |||||||| ||||||| |||||||||||||||    
T  6862655 ttcacataggaaaggtcaatctttttctaccataggaaagttggattcaaagattagattaagtga 6862720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 247
Target Start/End: Complemental strand, 31842791 - 31842736
Alignment:
Q  191 gaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||| |||  ||||||||||||||  |||||||||||||||||||||||    
T  31842791 gaaaggttaatcatttccaaccatgggaaagtg-gattcaatgattagattaagtga 31842736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 3221473 - 3221424
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagtt 223  Q
    |||||||||||||||||||||||| ||||||||   || |||||||||||    
T  3221473 ggtgtgtgttcacatgggaaaggtgaatcctttcccacgatgggaaagtt 3221424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 40344511 - 40344576
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||| ||||||||| |||||||||| | | |||| ||||||| |||| ||| ||||||||||||||    
T  40344511 ttcatatgggaaagtttaatcctttctcatcatgagaaagttggattaaattattagattaagtga 40344576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 52722158 - 52722125
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttt 207  Q
    ||||| ||||||||||||||||||||||||||||    
T  52722158 ggtgtttgttcacatgggaaaggttaatcctttt 52722125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 173 - 247
Target Start/End: Original strand, 26687499 - 26687573
Alignment:
Q  173 gggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||    
T  26687499 gggtgtgtgttcacatgggaaaggttaatccttttctaccatgggaaagttagattcaatgattagattaagtga 26687573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 173 - 247
Target Start/End: Original strand, 26957230 - 26957304
Alignment:
Q  173 gggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||    
T  26957230 gggtgtgtgttcacatgggaaaggttaatccttttctaccatgggaaagttagattcaatgattagattaagtga 26957304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 4929584 - 4929519
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||    
T  4929584 ttcacatgggaaaggttaatccttttccaccatgggaaagttggattcaatgattagattaagtga 4929519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 3957508 - 3957573
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||   |||||||||||||| |||||||||||||||||||||||    
T  3957508 ttcacatgggaaaggttaatcctttcccaccatgggaaagttggattcaatgattagattaagtga 3957573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 28076047 - 28075982
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||| ||||||||||| ||||  |||||||||||||| |||||||||||||||||||||||    
T  28076047 ttcacatggaaaaggttaatcattttccaccatgggaaagttggattcaatgattagattaagtga 28075982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 21769994 - 21770071
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaa----gttcgattcaatgattagattaagtga 247  Q
    |||||||||||| |||||||||||||||||||||  |||||||||||    ||| |||||||||||||||||||||||    
T  21769994 ggtgtgtgttcatatgggaaaggttaatccttttccaccatgggaaagttggttggattcaatgattagattaagtga 21770071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 8813761 - 8813698
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagt 245  Q
    |||| |||||||||||||||||||||  | |||||||||||| |||||||||||||||||||||    
T  8813761 ttcatatgggaaaggttaatccttttccatcatgggaaagttggattcaatgattagattaagt 8813698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 4928871 - 4928944
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||||||| |||||||||||   ||||| | |||||| |||| ||||||||||||||||||    
T  4928871 ggtgtgtgttcacatgggaaaagttaatcctttcccaccatagaaaagttggatttaatgattagattaagtga 4928944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 5324481 - 5324416
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||| ||||   |||||| ||||||| |||||||||||||||||||||||    
T  5324481 ttcacatgggaaaggttaattctttcataccatgagaaagttggattcaatgattagattaagtga 5324416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 5324304 - 5324368
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattag 238  Q
    |||||||||||||||||||||| ||||||||||   | |||||||||||| ||||||||||||||    
T  5324304 ggtgtgtgttcacatgggaaagcttaatcctttcctatcatgggaaagttggattcaatgattag 5324368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 3739749 - 3739676
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||| |||||  ||||||||||   || ||| ||||||| |||||||||||||||||||||||    
T  3739749 ggtgtgtgttcacataggaaaacttaatcctttcctactatgagaaagttggattcaatgattagattaagtga 3739676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 247
Target Start/End: Complemental strand, 3958216 - 3958147
Alignment:
Q  178 tgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||||||   | ||  |||||||| |||||||| ||||||||||||||    
T  3958216 tgtgttcacatgggaaaggttaatcctttcccatcaatggaaagtttgattcaataattagattaagtga 3958147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 33430051 - 33430115
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||| |||||||||||||||   ||||||| |||||| |||||||||||||||||||||||    
T  33430051 ttcacatggaaaaggttaatcctttcctaccatgg-aaagttggattcaatgattagattaagtga 33430115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 8813078 - 8813135
Alignment:
Q  175 gtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaat 232  Q
    ||||||||||| |||||||||||||||||| |   |||||||||||||| ||||||||    
T  8813078 gtgtgtgttcatatgggaaaggttaatcctctcccaccatgggaaagttggattcaat 8813135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 212 - 247
Target Start/End: Original strand, 3739038 - 3739073
Alignment:
Q  212 catgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||| |||||||||||||||||||||||    
T  3739038 catgggaaagttggattcaatgattagattaagtga 3739073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 39148768 - 39148818
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttc 224  Q
    |||||||||||| ||||||||||| ||| |||||  |||||||||||||||    
T  39148768 ggtgtgtgttcatatgggaaaggtgaattcttttccaccatgggaaagttc 39148818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 25075074 - 25075034
Alignment:
Q  183 tcacatgggaaaggttaatcctttttaaccatgggaaagtt 223  Q
    ||||||||||||||||||||||||   ||||||||||||||    
T  25075074 tcacatgggaaaggttaatcctttcccaccatgggaaagtt 25075034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 25133043 - 25133003
Alignment:
Q  183 tcacatgggaaaggttaatcctttttaaccatgggaaagtt 223  Q
    ||||||||||||||||||||||||   ||||||||||||||    
T  25133043 tcacatgggaaaggttaatcctttcccaccatgggaaagtt 25133003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 171 - 247
Target Start/End: Complemental strand, 28224477 - 28224401
Alignment:
Q  171 gtgggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||||||||||||||||||||||   |||||||||||||| |||||||||||||||||||||||    
T  28224477 gtgggtgtgtgttcacatgggaaaggttaatcctttcccaccatgggaaagttggattcaatgattagattaagtga 28224401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 6849288 - 6849361
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||||||||||   |||||||||||||| |||||||||||||||||||||||    
T  6849288 ggtgtgtgttcacatgggaaaggttaatcctttcccaccatgggaaagttggattcaatgattagattaagtga 6849361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 169 - 247
Target Start/End: Original strand, 8112675 - 8112753
Alignment:
Q  169 aagtgggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||| |||||||||||||||| |||| ||||||||||| | |||||||||||||| |||||||||||||||||||||||    
T  8112675 aagtaggtgtgtgttcacatgagaaatgttaatcctttctcaccatgggaaagttggattcaatgattagattaagtga 8112753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 7717370 - 7717298
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||| |||||||||    
T  7717370 ggtgtgtgttcacatgggaaaggttaatcctttctcaccatgggaaagtt-gattcaatgattatattaagtga 7717298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 16887583 - 16887656
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||||||||||   ||||||||| |||| |||||||||||||||||||||||    
T  16887583 ggtgtgtgttcacatgggaaaggttaatcctttcccaccatgggatagttggattcaatgattagattaagtga 16887656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 177 - 245
Target Start/End: Original strand, 10883290 - 10883358
Alignment:
Q  177 gtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagt 245  Q
    ||||||||||||||||||||||||||||||   |||||||||||||| |||||||||||||||||||||    
T  10883290 gtgtgttcacatgggaaaggttaatcctttcccaccatgggaaagttggattcaatgattagattaagt 10883358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 3595246 - 3595319
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||||| ||||   |||||||||||||| |||||||||||||||| ||||||    
T  3595246 ggtgtgtgttcacatgggaaaggttaattctttcccaccatgggaaagttggattcaatgattagataaagtga 3595319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 4387038 - 4386973
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||   |||||||||||||| |||||||||||||||||||||||    
T  4387038 ttcacatgggaaaggttaatcctttcccaccatgggaaagttggattcaatgattagattaagtga 4386973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 8963512 - 8963577
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||||||||||||  | |||||||||||| |||||||||||||||||||||||    
T  8963512 ttcacatgggaaaggttaatccttttctatcatgggaaagttggattcaatgattagattaagtga 8963577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 9224274 - 9224339
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||   |||||||||||||| |||||||||||||||||||||||    
T  9224274 ttcacatgggaaaggttaatcctttcccaccatgggaaagttggattcaatgattagattaagtga 9224339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 11256120 - 11256189
Alignment:
Q  178 tgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||||||||||| ||| | ||||||| |||||| |||||||||||||||||||||||    
T  11256120 tgtgttcacatgggaaaggttaatcatttctcaccatggtaaagttggattcaatgattagattaagtga 11256189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 16571126 - 16571191
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||   |||||||||||||| |||||||||||||||||||||||    
T  16571126 ttcacatgggaaaggttaatcctttcccaccatgggaaagttggattcaatgattagattaagtga 16571191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 16903164 - 16903102
Alignment:
Q  185 acatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||  |||||| ||||||| |||||||||||||||||||||||    
T  16903164 acatgggaaaggttaatccttttccaccatgagaaagttggattcaatgattagattaagtga 16903102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 177 - 247
Target Start/End: Complemental strand, 39477408 - 39477338
Alignment:
Q  177 gtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||| |||||||||||||||| |||   |||||||||||||| |||||||||||||||||||||||    
T  39477408 gtgtgttcatatgggaaaggttaatcatttcccaccatgggaaagttggattcaatgattagattaagtga 39477338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 3595973 - 3595908
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||| ||||||||||||| | ||||| |||||| |||||||||||||||||||||||    
T  3595973 ttcacatgggaaatgttaatcctttttcatcatggaaaagttggattcaatgattagattaagtga 3595908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 7716679 - 7716744
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||| |||||||||||   |||||||||||||| |||||||||||||||||||||||    
T  7716679 ttcacatgggaaatgttaatcctttcccaccatgggaaagttggattcaatgattagattaagtga 7716744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 8113378 - 8113313
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||||||||||||  |||||||||||||| ||||| |||||||||||| ||||    
T  8113378 ttcacatgggaaaggttaatccttttccaccatgggaaagttggattcgatgattagattatgtga 8113313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 16571812 - 16571739
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||||||||||   | ||||||||| || |||||||||||||||| ||||||    
T  16571812 ggtgtgtgttcacatgggaaaggttaatcctttcccatcatgggaaaattggattcaatgattagatcaagtga 16571739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 20244249 - 20244184
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||   ||||||| |||||| |||||||||||||||||||||||    
T  20244249 ttcacatgggaaaggttaatcctttcccaccatggaaaagttggattcaatgattagattaagtga 20244184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 28223796 - 28223861
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||   ||||| |||||||| |||||||||||||||||||||||    
T  28223796 ttcacatgggaaaggttaatcctttcccaccataggaaagttggattcaatgattagattaagtga 28223861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 174 - 241
Target Start/End: Original strand, 4386355 - 4386422
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagatt 241  Q
    |||||||||||||||||||||||||||| ||||   ||||| |||||||| |||||||||||||||||    
T  4386355 ggtgtgtgttcacatgggaaaggttaatactttcccaccataggaaagttggattcaatgattagatt 4386422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 174 - 245
Target Start/End: Complemental strand, 40166929 - 40166858
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagt 245  Q
    |||||||| |||||| |||||||||||||||||   ||||||||||| || |||||||||||||||||||||    
T  40166929 ggtgtgtgctcacataggaaaggttaatcctttcccaccatgggaaaattggattcaatgattagattaagt 40166858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 6849617 - 6849555
Alignment:
Q  185 acatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||| |||||||||||||||   |||||||||||||| |||||||||||||||||||||||    
T  6849617 acatggaaaaggttaatcctttcccaccatgggaaagttggattcaatgattagattaagtga 6849555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 7583132 - 7583205
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||| |||||||||||||||||   |||||| |||| || |||||||||||||||||| ||||    
T  7583132 ggtgtgtgttcacatcggaaaggttaatcctttcccaccatgagaaaattggattcaatgattagattaggtga 7583205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 17918021 - 17918094
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||| ||||| ||||||||||||||||||    |||| |||||| |||||||||||||||||||||||    
T  17918021 ggtgtgtgtttacatgagaaaggttaatcctttttctttatggaaaagttagattcaatgattagattaagtga 17918094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 11256815 - 11256753
Alignment:
Q  185 acatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||| ||||||||||| ||||  |||||| ||||||| |||||||||||||||||||||||    
T  11256815 acatggaaaaggttaatcattttccaccatgagaaagttggattcaatgattagattaagtga 11256753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 7583871 - 7583806
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||||||| |||   || ||||||||||| |||||||||||||| ||||||||    
T  7583871 ttcacatgggaaaggttaatcttttcccactatgggaaagttggattcaatgattagcttaagtga 7583806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 210 - 247
Target Start/End: Original strand, 20243589 - 20243626
Alignment:
Q  210 accatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||| |||||||||||||||||||||||    
T  20243589 accatgggaaagttggattcaatgattagattaagtga 20243626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 30161941 - 30162006
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||| ||||||| |||||||||||   | ||||| |||||| |||||||||||||||||||||||    
T  30161941 ttcacgtgggaaaagttaatcctttcccatcatggaaaagttggattcaatgattagattaagtga 30162006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 33847881 - 33847946
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||  |||||||||  |||||||||||| | |||||||  ||||||||||||||    
T  33847881 ttcacatgggaaaggccaatccttttccaccatgggaaagatggattcaacaattagattaagtga 33847946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 40165881 - 40165946
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||   |||| ||||  |||||||||||||| |||||||||||| ||||||||||    
T  40165881 ttcacatgggaaagaccaatcattttccaccatgggaaagttggattcaatgattggattaagtga 40165946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 247
Target Start/End: Original strand, 39476534 - 39476588
Alignment:
Q  193 aaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||   || |||||||||||  ||||||||||||||||||||||    
T  39476534 aaggttaatcctttcccactatgggaaagtttaattcaatgattagattaagtga 39476588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 210 - 247
Target Start/End: Original strand, 467141 - 467178
Alignment:
Q  210 accatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||| ||||||||||||| |||||||||    
T  467141 accatgggaaagttggattcaatgattaaattaagtga 467178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 174 - 245
Target Start/End: Complemental strand, 30116082 - 30116011
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagt 245  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||    
T  30116082 ggtgtgtgttcacatgggaaaggttaatccttttccaccatgggaaagttggattcaatgattagattaagt 30116011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 11998456 - 11998529
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||||||||||||||| |||   |||||||||||||| |||||||||||||||||||||||    
T  11998456 ggtgtgtgttcacatgggaaaggttaatcatttcccaccatgggaaagttggattcaatgattagattaagtga 11998529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 36848283 - 36848210
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||| |||||||||||  ||||||| |||||| |||||||||||||||||||||||    
T  36848283 ggtgtgtgttcacatgggaaagcttaatccttttccaccatggaaaagttggattcaatgattagattaagtga 36848210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 44061985 - 44062058
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||| ||||||||||| ||||  ||||||||||||||| |||||||||||||||||||||||    
T  44061985 ggtgtgtgttcacatgagaaaggttaatactttccaaccatgggaaagttggattcaatgattagattaagtga 44062058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 7818482 - 7818547
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||   |||||||||||||| |||||||||||||||||||||||    
T  7818482 ttcacatgggaaaggttaatcctttcccaccatgggaaagttggattcaatgattagattaagtga 7818547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 33114266 - 33114201
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||   |||||||||||||| |||||||||||||||||||||||    
T  33114266 ttcacatgggaaaggttaatcctttcccaccatgggaaagttggattcaatgattagattaagtga 33114201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 35237267 - 35237332
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||   |||||||||||||| |||||||||||||||||||||||    
T  35237267 ttcacatgggaaaggttaatcctttcccaccatgggaaagttggattcaatgattagattaagtga 35237332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 40907599 - 40907671
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||||||||||   |||| ||||||||| |||||||||||||||||||||||    
T  40907599 ggtgtgtgttcacatgggaaaggttaatcctttcccaccacgggaaagtt-gattcaatgattagattaagtga 40907671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 43481367 - 43481294
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||  |||||||||||||||   |||||||||||||| |||||||||||||||||||||||    
T  43481367 ggtgtgtgttcacatgaaaaaggttaatcctttcccaccatgggaaagttggattcaatgattagattaagtga 43481294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 243
Target Start/End: Original strand, 43591007 - 43591076
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaa 243  Q
    |||||||||||||||||||||||||||||||||   ||||||||||||||  ||||||||||||||||||    
T  43591007 ggtgtgtgttcacatgggaaaggttaatcctttcccaccatgggaaagttgaattcaatgattagattaa 43591076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 173 - 247
Target Start/End: Complemental strand, 7819184 - 7819110
Alignment:
Q  173 gggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||||||||| |||||| |||   |||||| ||||||| |||||||||||||||||||||||    
T  7819184 gggtgtgtgttcacatgggaaagattaatcttttcccaccatgcgaaagttagattcaatgattagattaagtga 7819110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 16889203 - 16889268
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||||||| |||   |||||||||||||| |||||||||||||||||||||||    
T  16889203 ttcacatgggaaaggttaatcttttcccaccatgggaaagttggattcaatgattagattaagtga 16889268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 39852162 - 39852227
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||| ||||||||||||||||||||   |||||||||||||| |||||||||||||||||||||||    
T  39852162 ttcaaatgggaaaggttaatcctttcccaccatgggaaagtttgattcaatgattagattaagtga 39852227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 43480624 - 43480689
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||||||| ||||  |||||||||||||| |||| ||||||||||||||||||    
T  43480624 ttcacatgggaaaggttaatctttttacaccatgggaaagttggattaaatgattagattaagtga 43480689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 179 - 247
Target Start/End: Complemental strand, 16880599 - 16880531
Alignment:
Q  179 gtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||| ||||||||||   |||||| ||||||| |||||||||||||||||||||||    
T  16880599 gtgttcacatgggaaagattaatcctttcccaccatgtgaaagttagattcaatgattagattaagtga 16880531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 190 - 246
Target Start/End: Complemental strand, 44062666 - 44062610
Alignment:
Q  190 ggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtg 246  Q
    ||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||    
T  44062666 ggaaaggttaatccttttccaccatgggaaagttggattcaatgattagattaagtg 44062610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 11999158 - 11999093
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||||||| |||   |||||||||||||| |||||||||||||||| ||||||    
T  11999158 ttcacatgggaaaggttaatcatttcccaccatgggaaagttggattcaatgattagatgaagtga 11999093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 16889913 - 16889841
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||| |||||||| |||   |||||||||||||| |||||||| ||||||||||||||    
T  16889913 ggtgtgtgttcacatgggaa-ggttaatcatttcccaccatgggaaagttggattcaattattagattaagtga 16889841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 38778881 - 38778808
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||| ||||||||||| |||||||||||| ||| | |||||| |||||||  ||||||||||||||||||||||    
T  38778881 ggtgggtgttcacatgagaaaggttaatcatttctcaccatgagaaagttgtattcaatgattagattaagtga 38778808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 10806515 - 10806452
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagt 245  Q
    ||||||||||||||||||||| |||   |||||||||||||| ||||||||||||| |||||||    
T  10806515 ttcacatgggaaaggttaatcttttcctaccatgggaaagtttgattcaatgattaaattaagt 10806452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 184 - 247
Target Start/End: Original strand, 33113585 - 33113648
Alignment:
Q  184 cacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||| |||||| |||   |||||||||||||| |||||||||||||||||||||||    
T  33113585 cacatgggaaagattaatcatttcccaccatgggaaagttggattcaatgattagattaagtga 33113648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 176 - 247
Target Start/End: Complemental strand, 35237947 - 35237877
Alignment:
Q  176 tgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||||||||   ||||| | |||||| |||||||| ||||||||||||||    
T  35237947 tgtgtgttcacatgggaaaggttaatcctttcccaccatagaaaagtt-gattcaataattagattaagtga 35237877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 247
Target Start/End: Complemental strand, 39852890 - 39852816
Alignment:
Q  173 gggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||| ||||||||||||||||   |||||   |||||| |||||||| ||||||||||||||    
T  39852890 gggtgtgtgttcacatgagaaaggttaatcctttcccaccataaaaaagttagattcaattattagattaagtga 39852816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 43591694 - 43591629
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||||||  |||   |||||||||||||| || ||||||||||||||||||||    
T  43591694 ttcacatgggaaaggttaattatttcccaccatgggaaagttagagtcaatgattagattaagtga 43591629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 38778172 - 38778227
Alignment:
Q  192 aaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||| |||   |||||||||||||| |||||||||||||||||||||||    
T  38778172 aaaggttaatcatttcccaccatgggaaagttggattcaatgattagattaagtga 38778227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 193 - 247
Target Start/End: Original strand, 30115386 - 30115440
Alignment:
Q  193 aaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||   ||||||| |||||| |||||||||||||||||||||||    
T  30115386 aaggttaatcctttcccaccatggaaaagttggattcaatgattagattaagtga 30115440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 210 - 247
Target Start/End: Original strand, 2209042 - 2209079
Alignment:
Q  210 accatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||| |||||||||||||||||||||||||||||||    
T  2209042 accatgagaaagttcgattcaatgattagattaagtga 2209079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 4373686 - 4373759
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||||||| ||||||| |||   | ||| ||||||||  |||||||||||| |||||||||    
T  4373686 ggtgtgtgttcacatgggaaatgttaatcatttcccatcataggaaagttgaattcaatgattatattaagtga 4373759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 16879896 - 16879961
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||| ||||||| |||   | |||| ||||||| |||||||||||||||||||||||    
T  16879896 ttcacatgggaaaagttaatcatttcctatcatgagaaagttggattcaatgattagattaagtga 16879961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 40309578 - 40309513
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||| | ||||||||||| |||   ||||| |||||||| |||||||||||||||||||||||    
T  40309578 ttcacatagaaaaggttaatcatttcccaccataggaaagttggattcaatgattagattaagtga 40309513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 206
Target Start/End: Complemental strand, 37533363 - 37533331
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatccttt 206  Q
    |||||||||||||||||||||||||||||||||    
T  37533363 ggtgtgtgttcacatgggaaaggttaatccttt 37533331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 212 - 247
Target Start/End: Complemental strand, 4374349 - 4374314
Alignment:
Q  212 catgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||| |||||||||||||||||||||||    
T  4374349 catgggaaagttggattcaatgattagattaagtga 4374314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 4375070 - 4375005
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||| ||||||||| | |||| ||||  |||||| ||||||| |||||||||||| ||||||||||    
T  4375070 ttcatatgggaaagatgaatcattttccaccatgagaaagttggattcaatgattggattaagtga 4375005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 173 - 247
Target Start/End: Complemental strand, 52859875 - 52859801
Alignment:
Q  173 gggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||  ||||||||||||||||||||||    
T  52859875 gggtgtgtgttcacatgggaaaggttaatcctttccaaccatgggaaagttgaattcaatgattagattaagtga 52859801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 1403773 - 1403701
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||| |||||||||||||||||   |||||||||||||| |||||||||||||||||||||||    
T  1403773 ggtgtgtgttcacataggaaaggttaatcctttcccaccatgggaaagtt-gattcaatgattagattaagtga 1403701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 8560828 - 8560756
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||||||||||   ||||||| |||||| |||||||||||||||||||||||    
T  8560828 ggtgtgtgttcacatgggaaaggttaatcctttcccaccatggaaaagtt-gattcaatgattagattaagtga 8560756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 42839701 - 42839774
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||||||||||   |||||||||||||| || |||||||| |||||||||||    
T  42839701 ggtgtgtgttcacatgggaaaggttaatcctttcccaccatgggaaagttagagtcaatgatcagattaagtga 42839774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 43368921 - 43368848
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||||| ||||   ||||||||||||||  ||||||||||||||||||||||    
T  43368921 ggtgtgtgttcacatgggaaaggttaattctttcccaccatgggaaagttgtattcaatgattagattaagtga 43368848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 1403048 - 1403113
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||| |||||||||||||||   |||||||||||||| |||||||||||||||||||||||    
T  1403048 ttcacatggaaaaggttaatcctttcccaccatgggaaagttggattcaatgattagattaagtga 1403113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 6288282 - 6288217
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||||||||||| | |||||||  ||||| |||||||||||||||||||||||    
T  6288282 ttcacatgggaaaggttaatcctttctcaccatggagaagttggattcaatgattagattaagtga 6288217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 7219733 - 7219661
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||||||||||   | ||||||||| || |||||||||||||||||||||||    
T  7219733 ggtgtgtgttcacatgggaaaggttaatcctttcccatcatgggaaa-ttggattcaatgattagattaagtga 7219661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 8560164 - 8560229
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||||||||||||  |||||||||| ||| ||||||| |||||||||||||||    
T  8560164 ttcacatgggaaaggttaatccttttccaccatgggaatgttggattcaaagattagattaagtga 8560229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 27797117 - 27797190
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||| |||||||||||||||   |||||||||| |||  ||||||||||||||||||||||    
T  27797117 ggtgtgtgttcacatggaaaaggttaatcctttcccaccatgggaaggttgaattcaatgattagattaagtga 27797190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 27797814 - 27797749
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||||||||||||  || ||||||||||| || ||||||||||||||||||||    
T  27797814 ttcacatgggaaaggttaatccttttccactatgggaaagttagagtcaatgattagattaagtga 27797749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 42840399 - 42840326
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||| |||||||||||||||||| ||||  || |||||||||||  ||||||||||||||||||||||    
T  42840399 ggtgtgtgtttacatgggaaaggttaatcattttccactatgggaaagttgaattcaatgattagattaagtga 42840326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 176 - 247
Target Start/End: Original strand, 48843582 - 48843653
Alignment:
Q  176 tgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||||||||||||| |||   ||||| |||||||| ||||||||||||| |||||||||    
T  48843582 tgtgtgttcacatgggaaaggttaatcttttcacaccataggaaagttggattcaatgattatattaagtga 48843653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 49534474 - 49534411
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagt 245  Q
    |||||||||||||||||||||||||   ||||||| |||||| |||||||||||||||||||||    
T  49534474 ttcacatgggaaaggttaatcctttcccaccatggaaaagttggattcaatgattagattaagt 49534411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 27817082 - 27817017
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||| ||||||||||||||   ||||||| |||||| |||||||||||||||||||||||    
T  27817082 ttcacatgggtaaggttaatcctttcccaccatggaaaagttggattcaatgattagattaagtga 27817017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 243
Target Start/End: Original strand, 41563179 - 41563248
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaa 243  Q
    |||||||||||| |||||||| |||||| |||||  |||||||||||||| |||||||| ||||||||||    
T  41563179 ggtgtgtgttcatatgggaaatgttaattcttttctaccatgggaaagttggattcaattattagattaa 41563248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 42838945 - 42839010
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||| |||||||||||||||   |||||||||||||| || ||||||||||||||||||||    
T  42838945 ttcacatggtaaaggttaatcctttcccaccatgggaaagttagagtcaatgattagattaagtga 42839010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 49533747 - 49533816
Alignment:
Q  178 tgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||| || ||||||||||||||   |||| ||||||||| |||||||||||||||||||||||    
T  49533747 tgtgttcacatagggaaggttaatcctttcccaccacgggaaagttggattcaatgattagattaagtga 49533816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 188 - 247
Target Start/End: Complemental strand, 42839620 - 42839561
Alignment:
Q  188 tgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||   ||||||||||||||  ||||||||||||||||||||||    
T  42839620 tgggaaaggttaatcctttcccaccatgggaaagttgaattcaatgattagattaagtga 42839561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 43368203 - 43368263
Alignment:
Q  187 atgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||||||   |||||||||| ||| ||||||||||||| |||||||||    
T  43368203 atgggaaaggttaatcctttcccaccatgggaatgttagattcaatgattaaattaagtga 43368263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 247
Target Start/End: Complemental strand, 51248570 - 51248496
Alignment:
Q  173 gggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||  |||||||||||||||  |||   ||||||| |||||| |||||||| ||||||||||||||    
T  51248570 gggtgtgtgttccaatgggaaaggttaattttttcccaccatggaaaagtttgattcaataattagattaagtga 51248496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 7782769 - 7782704
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||  ||||||||   |||||||||||||| |||||||||||| ||| ||||||    
T  7782769 ttcacatgggaaaggccaatcctttcctaccatgggaaagttggattcaatgattggatcaagtga 7782704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 212 - 247
Target Start/End: Complemental strand, 48844010 - 48843975
Alignment:
Q  212 catgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||| |||||||||||||||||||||||    
T  48844010 catgggaaagttggattcaatgattagattaagtga 48843975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 206
Target Start/End: Complemental strand, 48620409 - 48620377
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatccttt 206  Q
    |||||||||||||||||||||||| ||||||||    
T  48620409 ggtgtgtgttcacatgggaaaggtgaatccttt 48620377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 23584237 - 23584310
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||||| |||||||||||||   ||||||||||||||||||||||||||||||||||||||    
T  23584237 ggtgtgtgttcacatgggacaggttaatcctttcccaccatgggaaagttcgattcaatgattagattaagtga 23584310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 23599060 - 23599133
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||||| |||||||||||||   ||||||||||||||||||||||||||||||||||||||    
T  23599060 ggtgtgtgttcacatgggacaggttaatcctttcccaccatgggaaagttcgattcaatgattagattaagtga 23599133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 173 - 244
Target Start/End: Complemental strand, 25025851 - 25025780
Alignment:
Q  173 gggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaag 244  Q
    ||||||||||||||||||||||||||||||||||   |||||||||||||| ||||||||||||||||||||    
T  25025851 gggtgtgtgttcacatgggaaaggttaatcctttcccaccatgggaaagtttgattcaatgattagattaag 25025780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 173 - 247
Target Start/End: Original strand, 31014336 - 31014410
Alignment:
Q  173 gggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||| ||||| |||||||||||  |||||||||||||| |||||||||||||||||||||||    
T  31014336 gggtgtgtgttcacatgagaaagattaatccttttccaccatgggaaagttggattcaatgattagattaagtga 31014410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 29342341 - 29342414
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||||||||||||||| |||   |||||||||||||| |||||||||||||||||||||||    
T  29342341 ggtgtgtgttcacatgggaaaggttaatcttttcccaccatgggaaagttggattcaatgattagattaagtga 29342414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 44868704 - 44868631
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||||||||||   ||||||||||| || |||||||||||||||||||||||    
T  44868704 ggtgtgtgttcacatgggaaaggttaatcctttcccaccatgggaaaatttgattcaatgattagattaagtga 44868631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 3944903 - 3944968
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||   |||||||||||||| |||||||||||||||||||||||    
T  3944903 ttcacatgggaaaggttaatcctttcccaccatgggaaagttggattcaatgattagattaagtga 3944968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 41459130 - 41459202
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||||||||||   |||||| ||||||| |||||||||||||||||||||||    
T  41459130 ggtgtgtgttcacatgggaaaggttaatcctttcccaccatgagaaagtt-gattcaatgattagattaagtga 41459202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 41875702 - 41875629
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||| |||||||| ||||||| ||||| |||||||||||||| | |||||||||||||||||||||    
T  41875702 ggtgtgtgttcagatgggaaaagttaatcattttttaccatgggaaagttgggttcaatgattagattaagtga 41875629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 50675203 - 50675138
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||||||||||||| || |||||||||||  ||||||||||||||||||||||    
T  50675203 ttcacatgggaaaggttaatcctttttcacaatgggaaagttgaattcaatgattagattaagtga 50675138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 55281835 - 55281908
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||||||||||   ||||||||||| || |||| ||||||||||||||||||    
T  55281835 ggtgtgtgttcacatgggaaaggttaatcctttcccaccatgggaaaattggatttaatgattagattaagtga 55281908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 173 - 247
Target Start/End: Complemental strand, 8427830 - 8427756
Alignment:
Q  173 gggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||| |||||||||||||| ||||||||||||||   |||||||||||||| |||| ||||||||||||||||||    
T  8427830 gggtatgtgttcacatggggaaggttaatcctttcccaccatgggaaagttagatttaatgattagattaagtga 8427756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 23584961 - 23584896
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||   ||||||| |||||| |||||||||||||||||||||||    
T  23584961 ttcacatgggaaaggttaatcctttcccaccatggtaaagttggattcaatgattagattaagtga 23584896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 23599784 - 23599719
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||   ||||||| |||||| |||||||||||||||||||||||    
T  23599784 ttcacatgggaaaggttaatcctttcccaccatggtaaagttggattcaatgattagattaagtga 23599719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 25025182 - 25025247
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||   | |||||||||||| |||||||||||||||||||||||    
T  25025182 ttcacatgggaaaggttaatcctttcccatcatgggaaagtttgattcaatgattagattaagtga 25025247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 43658255 - 43658327
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||| || |||||||||||| | || ||||||||||| |||||||||||||||||||||||    
T  43658255 ggtgtgtgttcacatggaaacggttaatcctttcttactatgggaaagtt-gattcaatgattagattaagtga 43658327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 50687786 - 50687721
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||| ||||   |||||||||||||| |||||||||||||||||||||||    
T  50687786 ttcacatgggaaaggttaattctttcccaccatgggaaagtttgattcaatgattagattaagtga 50687721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 182 - 245
Target Start/End: Original strand, 44868015 - 44868078
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagt 245  Q
    ||||||| ||||||||||||| ||||  |||||||||||||| |||||||||||||||||||||    
T  44868015 ttcacataggaaaggttaatcattttccaccatgggaaagttggattcaatgattagattaagt 44868078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 48219310 - 48219248
Alignment:
Q  185 acatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||| |||| | ||||||||||| || |||||||||||||||||||||||    
T  48219310 acatgggaaaggttaattctttctcaccatgggaaaattggattcaatgattagattaagtga 48219248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 24220579 - 24220652
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||||| ||||   ||||||| ||| || ||||||||||| |||||||||||    
T  24220579 ggtgtgtgttcacatgggaaaggttaattctttcctaccatggaaaaattggattcaatgatcagattaagtga 24220652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 37375554 - 37375481
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||| ||||||||||||||||||||||   |||||  ||||||| ||||| |||||||||||||||||    
T  37375554 ggtgtgtgtttacatgggaaaggttaatcctttcccaccataagaaagttggattcgatgattagattaagtga 37375481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 48218591 - 48218664
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||| |||||||||||| |||   || |||| |||||| |||||||||||||||||||||||    
T  48218591 ggtgtgtgttcacatgagaaaggttaatcttttcccactatggaaaagttggattcaatgattagattaagtga 48218664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 32672177 - 32672239
Alignment:
Q  185 acatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||||||||   | |||||||||||| |||| ||||||||||||||||||    
T  32672177 acatgggaaaggttaatcctttcccaacatgggaaagttggatttaatgattagattaagtga 32672239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 37373976 - 37374038
Alignment:
Q  185 acatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||| |||   |||||||||||||| ||||||||||||| |||||||||    
T  37373976 acatgggaaaggttaatcttttcccaccatgggaaagttggattcaatgattaaattaagtga 37374038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 19556012 - 19555936
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaa---agttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||| ||||||||||||||||   | ||||||||   |||  |||||||||||||||||||||||    
T  19556012 ggtgtgtgttcacatgagaaaggttaatcctttcccatcatgggaaagtagtaggattcaatgattagattaagtga 19555936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 42356241 - 42356309
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaacca---tgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||| ||||||||   ||||   |||||||||| |||||||||||||||||||||||    
T  42356241 ttcacatgggaaaggtcaatcctttcccaccaccatgggaaagttggattcaatgattagattaagtga 42356309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 31015002 - 31014937
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||| |||||||||||||||| |||   | ||| |||||||| |||||||||||||||||||||||    
T  31015002 ttcatatgggaaaggttaatcttttcccatcataggaaagttggattcaatgattagattaagtga 31014937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 37374692 - 37374619
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||| ||||||||||||| ||||| | |||   | ||| |||||||| |||||||||||||||||||||||    
T  37374692 ggtgtgtattcacatgggaaatgttaaccttttcccatcataggaaagttggattcaatgattagattaagtga 37374619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 37374828 - 37374888
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||     |  ||||||||| |||||||||||||||||||||||    
T  37374828 ttcacatgggaaaggttaatccttt-----cccgggaaagttggattcaatgattagattaagtga 37374888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 38279409 - 38279458
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagtt 223  Q
    |||||||||||||||||||||||| ||||||||   ||||||||||||||    
T  38279409 ggtgtgtgttcacatgggaaaggtgaatcctttcccaccatgggaaagtt 38279458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 46187082 - 46187033
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagtt 223  Q
    |||||||||||||||||||||||| |||||||| | ||||| ||||||||    
T  46187082 ggtgtgtgttcacatgggaaaggtgaatcctttctcaccataggaaagtt 46187033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 210 - 247
Target Start/End: Complemental strand, 49752960 - 49752923
Alignment:
Q  210 accatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||| |||||||||||||||||||||||    
T  49752960 accatgggaaagttggattcaatgattagattaagtga 49752923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 55282498 - 55282434
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||| | ||||||||||   |||||||||||||| |||| ||||||||||||||||||    
T  55282498 ttcacatgggaa-gtttaatcctttcccaccatgggaaagttggatttaatgattagattaagtga 55282434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 212 - 247
Target Start/End: Complemental strand, 43658943 - 43658908
Alignment:
Q  212 catgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||| |||||||||||||||||||||||    
T  43658943 catgggaaagttggattcaatgattagattaagtga 43658908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 246
Target Start/End: Original strand, 47737062 - 47737135
Alignment:
Q  172 tgggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtg 246  Q
    |||||||||||| | ||||||||||||| ||||||   ||| |||| ||||| ||||||| ||||||||||||||    
T  47737062 tgggtgtgtgttaatatgggaaaggttattcctttcccacc-tgggtaagttggattcaacgattagattaagtg 47737135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 19555278 - 19555343
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||  ||||||||||| |||   | |||||||||||| |||| ||||||||||||||||||    
T  19555278 ttcacatgaaaaaggttaatcttttcccatcatgggaaagttggattaaatgattagattaagtga 19555343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 24221259 - 24221218
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagtt 223  Q
    ||||||||||||||||||||||||| | ||||| ||||||||    
T  24221259 ttcacatgggaaaggttaatcctttcttaccatcggaaagtt 24221218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 210 - 247
Target Start/End: Complemental strand, 47737723 - 47737686
Alignment:
Q  210 accatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||| ||| |||||||||||||||||||||||    
T  47737723 accatgggaatgttggattcaatgattagattaagtga 47737686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 228
Target Start/End: Original strand, 50674630 - 50674683
Alignment:
Q  175 gtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgatt 228  Q
    ||||||||||||||| |||||||||||| |||   |||||||||||||| ||||    
T  50674630 gtgtgtgttcacatgagaaaggttaatcttttcccaccatgggaaagttggatt 50674683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 218
Target Start/End: Complemental strand, 49164730 - 49164694
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatggga 218  Q
    ||||||||||||||||||||||||||| || ||||||    
T  49164730 ttcacatgggaaaggttaatcctttttcactatggga 49164694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 206
Target Start/End: Original strand, 49752265 - 49752297
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatccttt 206  Q
    |||||||| ||||||||||||||||||||||||    
T  49752265 ggtgtgtgatcacatgggaaaggttaatccttt 49752297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 174 - 246
Target Start/End: Original strand, 19816264 - 19816336
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtg 246  Q
    |||||||||||||||||||||||||||||||||   |||||||||||||| ||||||||||||||||||||||    
T  19816264 ggtgtgtgttcacatgggaaaggttaatcctttcccaccatgggaaagttggattcaatgattagattaagtg 19816336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 36683549 - 36683477
Alignment:
Q  175 gtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||||||||||||||||||   |||||||||||||| |||||||||||||||||||||||    
T  36683549 gtgtgtgttcacatgggaaaggttaatcctttcccaccatgggaaagttggattcaatgattagattaagtga 36683477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 172 - 247
Target Start/End: Complemental strand, 24044131 - 24044056
Alignment:
Q  172 tgggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||||||||||||   ||||||||||||||  ||||||||||||||||||||||    
T  24044131 tgggtgtgtgttcacatgggaaaggttaatcctttcccaccatgggaaagttttattcaatgattagattaagtga 24044056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 172 - 247
Target Start/End: Complemental strand, 47814723 - 47814648
Alignment:
Q  172 tgggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||| ||||||||||   |||||||||||||| |||||||||||||||||||||||    
T  47814723 tgggtgtgtgttcacatgggaaagcttaatcctttcccaccatgggaaagttggattcaatgattagattaagtga 47814648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 34853391 - 34853464
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||||||||||   ||||||||||||||  ||||||||||||||||||||||    
T  34853391 ggtgtgtgttcacatgggaaaggttaatcctttcccaccatgggaaagttgaattcaatgattagattaagtga 34853464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 42456602 - 42456529
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||||||||||   |||||||||||||| ||||||||||||| |||||||||    
T  42456602 ggtgtgtgttcacatgggaaaggttaatcctttcccaccatgggaaagttggattcaatgattacattaagtga 42456529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 4895160 - 4895095
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||||||| ||||  |||||||||||||| |||||||| ||||||||||||||    
T  4895160 ttcacatgggaaaggttaatcattttccaccatgggaaagttggattcaattattagattaagtga 4895095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 19816970 - 19816905
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||| |||||||||||||||||||||  |||||||||||||| |||| ||||||||||||||||||    
T  19816970 ttcatatgggaaaggttaatccttttccaccatgggaaagttggattaaatgattagattaagtga 19816905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 22275425 - 22275497
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||| ||||||||||| |||   |||||||||||||| |||||||||||||||||||||||    
T  22275425 ggtgtgtgttcacatggaaaaggttaatcatttcccaccatgggaaagtt-gattcaatgattagattaagtga 22275497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 36682843 - 36682908
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||||||| |||   |||||||||||||| |||||||||||||||||||||||    
T  36682843 ttcacatgggaaaggttaatcatttcccaccatgggaaagttggattcaatgattagattaagtga 36682908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 46814405 - 46814478
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||| ||||||||||||||||||||||   ||||||||||||||  |||||| |||||||||||||||    
T  46814405 ggtgtgtgtttacatgggaaaggttaatcctttcccaccatgggaaagttgaattcaacgattagattaagtga 46814478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 22276151 - 22276093
Alignment:
Q  185 acatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaa 243  Q
    ||||||||||||||||||||||   |||||||||||||| |||||||||||||||||||    
T  22276151 acatgggaaaggttaatcctttcccaccatgggaaagttggattcaatgattagattaa 22276093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 34854074 - 34854009
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||   ||||| |||||||| || ||||||||||||||||||||    
T  34854074 ttcacatgggaaaggttaatcctttcccaccataggaaagttagagtcaatgattagattaagtga 34854009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 47813985 - 47814044
Alignment:
Q  188 tgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||   ||||||| |||||| |||||||||||||||||||||||    
T  47813985 tgggaaaggttaatcctttcccaccatggaaaagttggattcaatgattagattaagtga 47814044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 4894515 - 4894572
Alignment:
Q  190 ggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||   ||||||||||||||  ||||||||||||||||||||||    
T  4894515 ggaaaggttaatcctttcccaccatgggaaagttgaattcaatgattagattaagtga 4894572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 24324067 - 24323995
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||||||||||||||| |||   || |||||||| || |||||||| ||||||||||||||    
T  24324067 ggtgtgtgttcacatgggaaaggttaatcatttcccactatgggaaa-ttggattcaataattagattaagtga 24323995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 27855574 - 27855638
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||||||| |||   |||||| ||||||| |||||||||||||||||||||||    
T  27855574 ttcacatgggaaaggttaatcatttcccaccatgagaaagtt-gattcaatgattagattaagtga 27855638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 42455929 - 42455994
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||   |||| |||||| || ||||||||||||| |||||||||    
T  42455929 ttcacatgggaaaggttaatcctttcccaccacgggaaaattggattcaatgattaaattaagtga 42455994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 46732575 - 46732640
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||| ||||   || |||| |||||| |||||||||||||||||||||||    
T  46732575 ttcacatgggaaaggttaattctttcccactatggaaaagttggattcaatgattagattaagtga 46732640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 30711792 - 30711861
Alignment:
Q  178 tgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||| ||||||||||  |||   ||||||| |||||| |||||||| ||||||||||||||    
T  30711792 tgtgttcacatggaaaaggttaattttttcccaccatggaaaagttggattcaattattagattaagtga 30711861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 212 - 247
Target Start/End: Original strand, 32499287 - 32499322
Alignment:
Q  212 catgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||| |||||||||||||||||||||||    
T  32499287 catgggaaagttggattcaatgattagattaagtga 32499322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 84377 - 84427
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttc 224  Q
    |||||||||||||||||||||||| ||||||||   || ||||||||||||    
T  84377 ggtgtgtgttcacatgggaaaggtgaatcctttcccactatgggaaagttc 84427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 27856216 - 27856162
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgatt 228  Q
    ||||||||||||||||||||||||||||| |||   ||||||| |||||| ||||    
T  27856216 ggtgtgtgttcacatgggaaaggttaatcatttcccaccatggaaaagttggatt 27856162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 33805977 - 33806042
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||   |||| ||||  ||||||| |||||| ||||||||||||| |||||||||    
T  33805977 ttcacatgggaaagaccaatcattttccaccatggaaaagttggattcaatgattaaattaagtga 33806042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 36620126 - 36620191
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||| |||||||||||||||| ||||  | |||| |||||||  |||||||||||| |||||||||    
T  36620126 ttcatatgggaaaggttaatctttttctatcatgagaaagttgaattcaatgattaaattaagtga 36620191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 210 - 243
Target Start/End: Complemental strand, 46815112 - 46815079
Alignment:
Q  210 accatgggaaagttcgattcaatgattagattaa 243  Q
    |||||||||||||| |||||||||||||||||||    
T  46815112 accatgggaaagttggattcaatgattagattaa 46815079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 247
Target Start/End: Complemental strand, 32499917 - 32499885
Alignment:
Q  215 gggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||| |||||||||||||||||||||||    
T  32499917 gggaaagttggattcaatgattagattaagtga 32499885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 5523201 - 5523273
Alignment:
Q  175 gtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||||||||||  ||||| |||||||| |||||||||||||||||||||||    
T  5523201 gtgtgtgttcacatgggaaaggttaatccttttccaccataggaaagttggattcaatgattagattaagtga 5523273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 6032158 - 6032231
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||||||||||   || ||||||||||| |||||||||||||||||||||||    
T  6032158 ggtgtgtgttcacatgggaaaggttaatcctttcccactatgggaaagttggattcaatgattagattaagtga 6032231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 30610711 - 30610784
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||| ||||||||||||||||| ||||  ||||||||||| || |||||||||||||||||||||||    
T  30610711 ggtgtgtgttcgcatgggaaaggttaatcattttccaccatgggaaaattggattcaatgattagattaagtga 30610784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 12809069 - 12809142
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||||||||||   || || |||||||| ||| |||||||||||||||||||    
T  12809069 ggtgtgtgttcacatgggaaaggttaatcctttcccactataggaaagttggatgcaatgattagattaagtga 12809142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 13936718 - 13936655
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagt 245  Q
    |||||||||||||||||||||||||   |||||||||||||| || ||||||||||||||||||    
T  13936718 ttcacatgggaaaggttaatcctttcccaccatgggaaagttagagtcaatgattagattaagt 13936655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 5523924 - 5523859
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||||||| |||   ||||| |||||||| |||||||||||||||||||||||    
T  5523924 ttcacatgggaaaggttaatcttttcccaccattggaaagtttgattcaatgattagattaagtga 5523859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 33668229 - 33668294
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||||||| |||   |||||||||||||| ||||||||||||| |||||||||    
T  33668229 ttcacatgggaaaggttaatcatttcccaccatgggaaagttggattcaatgattaaattaagtga 33668294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 12809780 - 12809715
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||||||   |   |||||||||| |||||||||||||||||||||||    
T  12809780 ttcacatgggaaaggttaatcctttcccatggtgggaaagttggattcaatgattagattaagtga 12809715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 30611423 - 30611362
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaa 243  Q
    |||||||| |||| |||||||||||   |||||||||||||| |||||||||||||||||||    
T  30611423 ttcacatgagaaatgttaatcctttcccaccatgggaaagttggattcaatgattagattaa 30611362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 33668916 - 33668843
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||| ||||| ||||||| |||   ||||| | |||||| |||||||||||||||||||||||    
T  33668916 ggtgtgtgttcacattggaaatgttaatcatttcccaccatagaaaagttggattcaatgattagattaagtga 33668843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 31723846 - 31723906
Alignment:
Q  187 atgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||||||   ||||||||||| || |||| ||||||||||||||||||    
T  31723846 atgggaaaggttaatcctttcctaccatgggaaatttggatttaatgattagattaagtga 31723906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 6032831 - 6032766
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||| |||| ||||||||||  ||| | |||||| ||||||| |||||||||||||||||||||||    
T  6032831 ttcatatggaaaaggttaattttttctcaccatgagaaagttagattcaatgattagattaagtga 6032766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 13944294 - 13944359
Alignment:
Q  178 tgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaa 243  Q
    |||||||| ||||||||| |||||| |||   | ||||||||||||  ||||||||||||||||||    
T  13944294 tgtgttcatatgggaaagattaatcatttcccatcatgggaaagttgaattcaatgattagattaa 13944359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1095 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold1095
Description:

Target: scaffold1095; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 1485 - 1558
Alignment:
Q  174 ggtgtgtgttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    |||||||||||||||||||||| |||||| |||   ||||||| |||||| |||||||||||||||||||||||    
T  1485 ggtgtgtgttcacatgggaaagcttaatcatttcgcaccatggaaaagttggattcaatgattagattaagtga 1558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 15311 - 15246
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||| |||||||||||||||   |||||||||||||| |||||||||||||||||||||||    
T  15311 ttcacatggaaaaggttaatcctttcccaccatgggaaagttggattcaatgattagattaagtga 15246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 11274 - 11338
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||||||||||||||| ||||  |||||||||||||| |||||||||||||||||||||||    
T  11274 ttcacatgggaaaggttaatc-ttttccaccatgggaaagttggattcaatgattagattaagtga 11338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0368 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 11862 - 11797
Alignment:
Q  182 ttcacatgggaaaggttaatcctttttaaccatgggaaagttcgattcaatgattagattaagtga 247  Q
    ||||||||| |||||||||||||||   |||||||||||||| || |||||||| |||||||||||    
T  11862 ttcacatggtaaaggttaatcctttcccaccatgggaaagttagagtcaatgatcagattaagtga 11797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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