View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19676_low_8 (Length: 244)
Name: NF19676_low_8
Description: NF19676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19676_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 6e-86; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 36205442 - 36205667
Alignment:
| Q |
18 |
agtaaacttattcaatcattaaagaaaagatgtttcttatcacacca--------gggataagaaaaagtacaatcatttgcataatttcaagcatccat |
109 |
Q |
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| T |
36205442 |
agtaaacttattcaatcaataaagaaaagatgtttcttatcacaccaccctcaaagggataagaagaagtacaatcatttgcataatttcaagcatccat |
36205541 |
T |
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| Q |
110 |
tactcttccaattctcaaatatacttgaaacttggcagtcttttggccaccttcaccccaagcaagtttgaatttttcaataacatcctccttaagcagt |
209 |
Q |
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| T |
36205542 |
tactcttccaattctcaaatatacttgaaacttgacagtcttttggccatcttcaccacgagcaagtttaaaattttcaataacatcctccttaagcagt |
36205641 |
T |
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| Q |
210 |
tcaacccctttattctttgatgtctg |
235 |
Q |
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| T |
36205642 |
tcaaccccgttattctttgatgtctg |
36205667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 64 - 231
Target Start/End: Original strand, 36208583 - 36208750
Alignment:
| Q |
64 |
agggataagaaaaagtacaatcatttgcataatttcaagcatccattactcttccaattctcaaatatacttgaaacttggcagtcttttggccaccttc |
163 |
Q |
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| T |
36208583 |
agggataagaaaaagtacaatcatttgcatattttcaagcatcccttactcttccaattctcagatatacttgaaacttggcaatcttttttccatcttc |
36208682 |
T |
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| Q |
164 |
accccaagcaagtttgaatttttcaataacatcctccttaagcagttcaacccctttattctttgatg |
231 |
Q |
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| T |
36208683 |
tccccaagcaagtttgaatttttcaataacatcatcagtaagaagctcaacccctttattctttgatg |
36208750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 111 - 189
Target Start/End: Complemental strand, 35400147 - 35400069
Alignment:
| Q |
111 |
actcttccaattctcaaatatacttgaaacttggcagtcttttggccaccttcaccccaagcaagtttgaatttttcaa |
189 |
Q |
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|||||||||||||||| ||| ||| ||||||||||||| || |||||| |||||||||||||||| || |||||||||| |
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| T |
35400147 |
actcttccaattctcagataaactggaaacttggcagttttgtggccatcttcaccccaagcaagcttaaatttttcaa |
35400069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 111 - 189
Target Start/End: Complemental strand, 35405076 - 35404998
Alignment:
| Q |
111 |
actcttccaattctcaaatatacttgaaacttggcagtcttttggccaccttcaccccaagcaagtttgaatttttcaa |
189 |
Q |
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|||||||||||||||| ||| ||| ||||||||||||| || |||||| |||||||||||||||| || |||||||||| |
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| T |
35405076 |
actcttccaattctcagataaactggaaacttggcagttttgtggccatcttcaccccaagcaagcttaaatttttcaa |
35404998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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