View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19677_high_10 (Length: 269)

Name: NF19677_high_10
Description: NF19677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19677_high_10
NF19677_high_10
[»] chr5 (1 HSPs)
chr5 (1-253)||(30896873-30897126)
[»] chr2 (2 HSPs)
chr2 (16-137)||(25906048-25906169)
chr2 (18-138)||(24227892-24228012)
[»] chr4 (3 HSPs)
chr4 (14-136)||(13929172-13929294)
chr4 (13-120)||(14116668-14116775)
chr4 (13-116)||(8502275-8502378)
[»] chr8 (2 HSPs)
chr8 (13-116)||(30214163-30214266)
chr8 (1-106)||(10329759-10329863)
[»] chr1 (1 HSPs)
chr1 (16-120)||(26858411-26858515)
[»] chr3 (1 HSPs)
chr3 (1-67)||(24097515-24097581)
[»] chr7 (2 HSPs)
chr7 (16-72)||(19197002-19197058)
chr7 (17-72)||(21019779-21019834)
[»] scaffold0669 (1 HSPs)
scaffold0669 (13-103)||(4650-4740)


Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 30897126 - 30896873
Alignment:
Q  1 tgtaatgtatcgttctattagaagcaaagaattttcgaatgactattcaacaacattatctatttgatgcaaaattccaacgactccgatcaaccttctc 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  30897126 tgtaatggatcgttctattagaagcaaagaattttcgaatgactattcaacaacattatccatttgatgcaaaattccaacgactccgatcaagcttctc 30897027  T
Q  101 aaggacgaatttgatgagttaaaaaatcttcaacaacaacaatttaacactctcttatacaaggacatgagcatttnnnnnnntataacacttctatca- 199  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||| ||       ||||||||||||||||     
T  30897026 aatgacgaatttgatgagttaaaaaatcttcaacaacaacaatttaacactctcttatacaaagaccggagcagttaaaaaaatataacacttctatcat 30896927  T
Q  200 tttcttactagtgtcaatactctttcaatatctatagcgcacaaaccttgtttt 253  Q
    ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30896926 ttttttactagtgtcaatactctttcaatttctatagcgcacaaaccttgtttt 30896873  T

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Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 25906048 - 25906169
Alignment:
Q  16 tattagaagcaaagaattttcgaatgactattcaacaacattatctatttgatgcaaaattccaacgactccgatcaaccttctcaaggacgaatttgat 115  Q
    ||||| ||||||||||||||| |||||||||||| | |||||||| |||||| ||||  |  ||||||||| |||||| |||||||| ||||||||||||    
T  25906048 tattaaaagcaaagaattttcaaatgactattcagcgacattatccatttgaggcaacttgacaacgactctgatcaagcttctcaaagacgaatttgat 25906147  T
Q  116 gagttaaaaaatcttcaacaac 137  Q
    ||||| | ||||||||||||||    
T  25906148 gagttgacaaatcttcaacaac 25906169  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 24227892 - 24228012
Alignment:
Q  18 ttagaagcaaagaattttcgaatgactattcaacaacattatctatttgatgcaaaattccaacgactccgatcaaccttctcaaggacgaatttgatga 117  Q
    |||||||||||||| ||||||||||||| ||||| |||||||| |||||| | || ||  ||| | ||| ||| || ||| | |||||| |||||||||     
T  24227892 ttagaagcaaagaaatttcgaatgactactcaacgacattatccatttgaggtaacatctcaatgtctctgattaatctttttaaggactaatttgatgc 24227991  T
Q  118 gttaaaaaatcttcaacaaca 138  Q
    |||  ||| ||||||||||||    
T  24227992 gttggaaattcttcaacaaca 24228012  T

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Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 14 - 136
Target Start/End: Original strand, 13929172 - 13929294
Alignment:
Q  14 tctattagaagcaaagaattttcgaatgactattcaacaacattatctatttgatgcaaaattccaacgactccgatcaaccttctcaaggacgaatttg 113  Q
    |||||||||| ||||  ||||| |||||||||||||||||| ||||| ||  || ||||| |   |||||||| ||||||  ||||||||||||||||||    
T  13929172 tctattagaaacaaaacatttttgaatgactattcaacaacgttatccataagaagcaaagtgttaacgactctgatcaagtttctcaaggacgaatttg 13929271  T
Q  114 atgagttaaaaaatcttcaacaa 136  Q
    |||||||   |||||||||||||    
T  13929272 atgagttggcaaatcttcaacaa 13929294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 14116775 - 14116668
Alignment:
Q  13 ttctattagaagcaaagaattttcgaatgactattcaacaacattatctatttgatgcaaaattccaacgactccgatcaaccttctcaaggacgaattt 112  Q
    ||||||||||||||||  ||||| ||||||||||||||| |||||||| ||  ||  |||| || ||||||||  ||||||  ||||||||||| ||| |    
T  14116775 ttctattagaagcaaaagatttttgaatgactattcaacgacattatccataagagacaaagtttcaacgactttgatcaaatttctcaaggactaatgt 14116676  T
Q  113 gatgagtt 120  Q
    ||||||||    
T  14116675 gatgagtt 14116668  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 8502378 - 8502275
Alignment:
Q  13 ttctattagaagcaaagaattttcgaatgactattcaacaacattatctatttgatgcaaaattccaacgactccgatcaaccttctcaaggacgaattt 112  Q
    |||||||| |||||||| | |||| |||||||| ||||| |||||||| |||||| | |||  ||||| | ||  |||||| |||||||||||| |||||    
T  8502378 ttctattaaaagcaaaggaatttcaaatgactactcaacgacattatccatttgaagaaaagatccaaagtctttgatcaagcttctcaaggactaattt 8502279  T
Q  113 gatg 116  Q
    ||||    
T  8502278 gatg 8502275  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 30214266 - 30214163
Alignment:
Q  13 ttctattagaagcaaagaattttcgaatgactattcaacaacattatctatttgatgcaaaattccaacgactccgatcaaccttctcaaggacgaattt 112  Q
    |||||||| || ||||  ||||||||||||||| ||||| |||||||| |||||| | || |||  |||| ||| |||||| |||||||||||| |||||    
T  30214266 ttctattaaaaacaaaagattttcgaatgactactcaacgacattatccatttgaggaaacattttaacgtctctgatcaagcttctcaaggactaattt 30214167  T
Q  113 gatg 116  Q
    ||||    
T  30214166 gatg 30214163  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 10329759 - 10329863
Alignment:
Q  1 tgtaatgtatcgttctattagaagcaaagaattttcgaatgactattcaacaacattatctatttgatgcaaaattccaacgactccgatcaaccttctc 100  Q
    |||||| |||| |||||||||||||||||||||||| ||| | |||||||| |||||||| ||  || ||||| || ||||| ||| |||| | ||||||    
T  10329759 tgtaatatatcattctattagaagcaaagaattttcaaataattattcaacgacattatccataagaggcaaagtttcaacgtctctgatcta-cttctc 10329857  T
Q  101 aaggac 106  Q
    ||||||    
T  10329858 aaggac 10329863  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 26858411 - 26858515
Alignment:
Q  16 tattagaagcaaagaattttcgaatgactattcaacaacattatctatttgatgcaaaattccaacgactccgatcaaccttctcaaggacgaatttgat 115  Q
    ||||||||||| |  ||||||| |||||||||||||||||||||  ||  || ||||| ||  ||||||||  || || |||||||| ||||||||||||    
T  26858411 tattagaagcataagattttcggatgactattcaacaacattattcataagaagcaaagttttaacgactctaattaagcttctcaatgacgaatttgat 26858510  T
Q  116 gagtt 120  Q
    |||||    
T  26858511 gagtt 26858515  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 24097515 - 24097581
Alignment:
Q  1 tgtaatgtatcgttctattagaagcaaagaattttcgaatgactattcaacaacattatctatttga 67  Q
    |||||| |||| |||||||||||||||| || ||| ||||||||| ||||| |||||||| ||||||    
T  24097515 tgtaatatatcattctattagaagcaaataaattttgaatgactactcaacgacattatccatttga 24097581  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 19197002 - 19197058
Alignment:
Q  16 tattagaagcaaagaattttcgaatgactattcaacaacattatctatttgatgcaa 72  Q
    |||||||||||||| | |||| |||||||| ||||| ||||||||||||||| ||||    
T  19197002 tattagaagcaaagtaatttcaaatgactactcaacgacattatctatttgaggcaa 19197058  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 21019834 - 21019779
Alignment:
Q  17 attagaagcaaagaattttcgaatgactattcaacaacattatctatttgatgcaa 72  Q
    ||||||||||||||| |||||| |||||| ||||| |||||||||| |||| ||||    
T  21019834 attagaagcaaagaaatttcgagtgactactcaaccacattatctagttgaggcaa 21019779  T

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Target: scaffold0669 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0669
Description:

Target: scaffold0669; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 103
Target Start/End: Complemental strand, 4740 - 4650
Alignment:
Q  13 ttctattagaagcaaagaattttcgaatgactattcaacaacattatctatttgatgcaaaattccaacgactccgatcaaccttctcaag 103  Q
    |||||| |||| ||||| ||||||||||||||||||||| | |||||  ||  || ||||| |||| ||||||  |||||| |||||||||    
T  4740 ttctataagaatcaaaggattttcgaatgactattcaacgatattattcataagaagcaaagttccgacgactttgatcaagcttctcaag 4650  T

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